BLASTX nr result
ID: Paeonia24_contig00002660
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia24_contig00002660
(2477 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17549.3| unnamed protein product [Vitis vinifera] 609 e-171
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 585 e-164
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s... 526 e-146
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 524 e-146
ref|XP_007046991.1| SIN-like family protein, putative isoform 1 ... 523 e-145
ref|XP_007046993.1| Transcription regulators,zinc ion binding, p... 504 e-140
ref|XP_007046992.1| Transcription regulators,zinc ion binding, p... 498 e-138
ref|XP_007201935.1| hypothetical protein PRUPE_ppa002228mg [Prun... 484 e-134
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin... 483 e-133
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu... 481 e-133
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr... 479 e-132
ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III s... 463 e-127
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor... 453 e-124
ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arab... 444 e-122
ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citr... 439 e-120
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora] 439 e-120
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5... 434 e-119
ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III s... 433 e-118
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s... 432 e-118
ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|1017... 432 e-118
>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 609 bits (1570), Expect = e-171
Identities = 350/724 (48%), Positives = 452/724 (62%), Gaps = 11/724 (1%)
Frame = -2
Query: 2398 DDLLGPSNQNKAPARK---FAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAELNDALFPT 2228
DDL GP N+AP R+ FAPK + EP++L+D
Sbjct: 4 DDLDGP---NRAPVRRPSRFAPKSSKPKLIPKPEPSS---------QPEPSKLDDVTLIN 51
Query: 2227 KKEEDSKPEVAETAPETL--STANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXXXXXXX 2054
KKEEDS+P + + A E ST NG +M + K E+ + +
Sbjct: 52 KKEEDSQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDV--- 108
Query: 2053 XXXXXXXXXXXXXXXXXXXVYFNPSSTD---KIYVLQYPLRPCWRPYELDERCKEVRVKP 1883
+F P TD KIYVLQYPLRP WRPYEL ERC EVRVKP
Sbjct: 109 --------------------FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKP 148
Query: 1882 TSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPI 1703
SAEVEVDL +DS+NYD ++P+A +M KQTLS++WKPP+TT VGVLMGNKLHLNPI
Sbjct: 149 ASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPI 208
Query: 1702 HAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQN 1523
HAVVQLRPSMEYL+ G K+ N+VT D + +K E S+ E+S G KKQ+K+ G +EQN
Sbjct: 209 HAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQN 268
Query: 1522 TFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGASAN--IRS 1349
T AESWV LKY+ S+S+ SA YLQKMVA+++SPIQF MSP +YVNSLCP +N RS
Sbjct: 269 TDAAESWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRS 328
Query: 1348 GGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGL 1169
GLS+RFLLS+PLEER K LC+G +HRF+++KH P+ S +D+L +L HA LVQGL
Sbjct: 329 KGLSRRFLLSMPLEERFKTLLCEGPP-VHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGL 387
Query: 1168 WVPKSTLLIPENE-IERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIH 992
WVPKS+LL P + + ++RDY+L LFS+ + SQ ++PG +ALK F+++ +
Sbjct: 388 WVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERP 447
Query: 991 SSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSA 812
S +WKFKE D SF+KLH + V EQ+++WE+ K+ D I R K KPS A
Sbjct: 448 SFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIA 507
Query: 811 DRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRD 632
++ G SD A R + MS ETR ALPKAL+++F+ V SFQ ICQ LRD
Sbjct: 508 NKTGTSTKSD-GATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRD 566
Query: 631 LAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALR 452
LAVS ST PK D +AAAYG DAPQEEL A+I++ A +HG YV ++ +E +EH LR
Sbjct: 567 LAVSKSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWKT-SEHSEHNPLR 625
Query: 451 KVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSD 272
KVV++L CG+ P AKL +ADI AA IAL +IT E + ++CE +G + LKS D
Sbjct: 626 KVVVDLFCGKEPNAKLKRADIMEAAKIALK-KEITTHEYNKVVSELCESRGSLWVLKSGD 684
Query: 271 GKPK 260
GKPK
Sbjct: 685 GKPK 688
>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
vinifera]
Length = 672
Score = 585 bits (1508), Expect = e-164
Identities = 342/724 (47%), Positives = 441/724 (60%), Gaps = 11/724 (1%)
Frame = -2
Query: 2398 DDLLGPSNQNKAPARK---FAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAELNDALFPT 2228
DDL GP N+AP R+ FAPK + EP++L+D
Sbjct: 4 DDLDGP---NRAPVRRPSRFAPKSSKPKLIPKPEPSS---------QPEPSKLDDVTLIN 51
Query: 2227 KKEEDSKPEVAETAPETL--STANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXXXXXXX 2054
KKEEDS+P + + A E ST NG +M + K E+ + +
Sbjct: 52 KKEEDSQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDEDPVVREIDV--- 108
Query: 2053 XXXXXXXXXXXXXXXXXXXVYFNPSSTD---KIYVLQYPLRPCWRPYELDERCKEVRVKP 1883
+F P TD KIYVLQYPLRP WRPYEL ERC EVRVKP
Sbjct: 109 --------------------FFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKP 148
Query: 1882 TSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPI 1703
SAEVEVDL +DS+NYD ++P+A +M KQTLS++WKPP+TT VGVLMGNKLHLNPI
Sbjct: 149 ASAEVEVDLSIDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPI 208
Query: 1702 HAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQN 1523
HAVVQLRPSMEYL+ G K+ N+VT D + +K E S+ E+S G KKQ
Sbjct: 209 HAVVQLRPSMEYLSSGGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQ----------- 257
Query: 1522 TFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGASAN--IRS 1349
SWV LKY+ S+S+ SA YLQKMVA+++SPIQF MSP +YVNSLCP +N RS
Sbjct: 258 -----SWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRS 312
Query: 1348 GGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGL 1169
GLS+RFLLS+PLEER K LC+G +HRF+++KH P+ S +D+L +L HA LVQGL
Sbjct: 313 KGLSRRFLLSMPLEERFKTLLCEGPP-VHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGL 371
Query: 1168 WVPKSTLLIPENE-IERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIH 992
WVPKS+LL P + + ++RDY+L LFS+ + SQ ++PG +ALK F+++ +
Sbjct: 372 WVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSILAVERP 431
Query: 991 SSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSA 812
S +WKFKE D SF+KLH + V EQ+++WE+ K+ D I R K KPS A
Sbjct: 432 SFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLEKQITDIIHGGGRRGPVTKNSGKPSIA 491
Query: 811 DRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRD 632
++ G SD A R + MS ETR ALPKAL+++F+ V SFQ ICQ LRD
Sbjct: 492 NKTGTSTKSD-GATRATNGTPVRRTAMSAETREALPKALEEVFRLHKVCSFQLICQALRD 550
Query: 631 LAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALR 452
LAVS ST PK D +AAAYG DAPQEEL A+I++ A +HG YV ++ +E +EH LR
Sbjct: 551 LAVSKSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWKT-SEHSEHNPLR 609
Query: 451 KVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSD 272
KVV++L CG+ P AKL +ADI AA IAL +IT E + ++CE +G + LKS D
Sbjct: 610 KVVVDLFCGKEPNAKLKRADIMEAAKIALK-KEITTHEYNKVVSELCESRGSLWVLKSGD 668
Query: 271 GKPK 260
GKPK
Sbjct: 669 GKPK 672
>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
sativus]
Length = 702
Score = 526 bits (1356), Expect = e-146
Identities = 316/726 (43%), Positives = 414/726 (57%), Gaps = 11/726 (1%)
Frame = -2
Query: 2404 MDDDLLGPSNQNKAPARKFAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAEL-------- 2249
MD D L +Q + +FAPK ++ + K EP
Sbjct: 1 MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60
Query: 2248 NDALFPTKKEEDSKPEVAETAPETLSTANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXX 2069
DA KKE+ + EV +L NG AKM++ K E+ E++
Sbjct: 61 PDARVEEKKEDGEEVEVKPKVESSLP--NGVAKMDVETKSEVEEDAM------------- 105
Query: 2068 XXXXXXXXXXXXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDERCKEV 1895
V F PS S K+YVLQYPLRP WRPYE + RC EV
Sbjct: 106 ----VDDDPIEEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEV 161
Query: 1894 RVKPTSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLH 1715
RVKP++ EVEVDL ++S NYD + +M KQTL+S+W+PP TS AVG+LMGNKLH
Sbjct: 162 RVKPSTGEVEVDLNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLH 221
Query: 1714 LNPIHAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDS 1535
LNP+HAVVQLRPS E+LN G K+ N+V D + +KSE SAG S+KQ K G S
Sbjct: 222 LNPVHAVVQLRPSFEHLNSGGPKRKNNVRAD--SDVKSEEHVDVNSAGASRKQKKQTGPS 279
Query: 1534 NEQNTFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGAS-AN 1358
E T D E W+ LKYY +S+ S +LQ MV+Q SP+QFSMSP DY++SLCPG S +
Sbjct: 280 TEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSG 339
Query: 1357 IRSGGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLV 1178
+ G SK++LLSL LEER+KK L +G + RF+++KH P+ ++ + LQ +A+LV
Sbjct: 340 NKPKGPSKKYLLSLSLEERIKKLLTEGPP-VQRFSALKHYAPDYETEEFIETLQQYAQLV 398
Query: 1177 QGLWVPKSTLLIPENEIERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNK 998
QGLWVPKS LIP++ R +RD+VLFLFS+N V SQ +P +K F+NLFG +
Sbjct: 399 QGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVE 458
Query: 997 IHSSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPS 818
+ +WKFKE+ D F+ H +Q++LW N +K +++ KP
Sbjct: 459 RPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNV-EKGFTFLRSIKSVHHANAATGKPG 517
Query: 817 SADRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGL 638
+ +SD++ + K MS+ETR ALPKALQKLF+ V SFQ ICQGL
Sbjct: 518 VVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGL 577
Query: 637 RDLAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTA 458
RDLAVS ST PK DA M +AAAYGVDAP +ELK +I++ A IHG YVL S E E+
Sbjct: 578 RDLAVSQSTLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDP 637
Query: 457 LRKVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKS 278
LRKVVI+LL GRGP A L KAD+ A+ LG I E + +IC G S++LKS
Sbjct: 638 LRKVVIQLLRGRGPKAVLKKADVLEASKHELG-RAINSNEYSKVMNEICISHGSSWTLKS 696
Query: 277 SDGKPK 260
DG +
Sbjct: 697 GDGNSR 702
>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC5-like [Cucumis sativus]
Length = 702
Score = 524 bits (1350), Expect = e-146
Identities = 315/726 (43%), Positives = 413/726 (56%), Gaps = 11/726 (1%)
Frame = -2
Query: 2404 MDDDLLGPSNQNKAPARKFAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAEL-------- 2249
MD D L +Q + +FAPK ++ + K EP
Sbjct: 1 MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60
Query: 2248 NDALFPTKKEEDSKPEVAETAPETLSTANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXX 2069
DA KKE+ + EV +L NG AKM++ K E+ E++
Sbjct: 61 PDARVEEKKEDGEEVEVKPKVESSLP--NGVAKMDVETKSEVEEDAM------------- 105
Query: 2068 XXXXXXXXXXXXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDERCKEV 1895
V F PS S K+YVLQYPLRP WRPYE + RC EV
Sbjct: 106 ----VDDDPIEEDASEDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEV 161
Query: 1894 RVKPTSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLH 1715
RVKP++ EVEVDL ++S NYD + +M KQTL+S+W+PP TS AVG+LMGNKLH
Sbjct: 162 RVKPSTGEVEVDLNVDIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLH 221
Query: 1714 LNPIHAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDS 1535
LNP+HAVVQLRPS E+LN G K+ N+V D + +KSE SAG S+KQ K G S
Sbjct: 222 LNPVHAVVQLRPSFEHLNSGGPKRKNNVRAD--SDVKSEEHVDVNSAGASRKQKKQTGPS 279
Query: 1534 NEQNTFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGAS-AN 1358
E T D E W+ LKYY +S+ S +LQ MV+Q SP+QFSMSP DY++SLCPG S +
Sbjct: 280 TEVKTRDEECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSG 339
Query: 1357 IRSGGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLV 1178
+ G SK++LLSL LEER+KK L +G + RF+++KH P+ ++ + LQ +A+LV
Sbjct: 340 NKPKGPSKKYLLSLSLEERIKKLLTEGPP-VQRFSALKHYAPDYETEEFIETLQQYAQLV 398
Query: 1177 QGLWVPKSTLLIPENEIERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNK 998
QGLWVPKS LIP++ R +RD+VLFLFS+N V SQ +P +K F+NLFG +
Sbjct: 399 QGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVE 458
Query: 997 IHSSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPS 818
+ +WKFKE+ D F+ H +Q++LW N +K +++ KP
Sbjct: 459 RPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNV-EKGFTFLRSIKSVHHANAATGKPG 517
Query: 817 SADRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGL 638
+ +SD++ + K MS+ETR ALPKALQKLF+ V SFQ ICQGL
Sbjct: 518 VVPKLEKQVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGL 577
Query: 637 RDLAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTA 458
RDLAVS ST PK DA M +AAAYGVDAP +EL +I++ A IHG YVL S E E+
Sbjct: 578 RDLAVSQSTLPKADARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDP 637
Query: 457 LRKVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKS 278
LRKVVI+LL GRGP A L KAD+ A+ LG I E + +IC G S++LKS
Sbjct: 638 LRKVVIQLLRGRGPKAVLKKADVLEASKHELG-RAINSNEYSKVMNEICISHGSSWTLKS 696
Query: 277 SDGKPK 260
DG +
Sbjct: 697 GDGNSR 702
>ref|XP_007046991.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
gi|508699252|gb|EOX91148.1| SIN-like family protein,
putative isoform 1 [Theobroma cacao]
Length = 700
Score = 523 bits (1346), Expect = e-145
Identities = 321/733 (43%), Positives = 423/733 (57%), Gaps = 19/733 (2%)
Frame = -2
Query: 2404 MDD--DLLGPSNQNKAPAR------KFAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAEL 2249
+DD +L GPS N + KFAP+LK P
Sbjct: 3 LDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPPPP 62
Query: 2248 NDALFPTKK--EEDSKPEVAETAPETLSTANGTAKMNIGNKGE---MMEESSDXXXXXXX 2084
+++ K+ EED KP V S +NG KM I + + +M E +
Sbjct: 63 PESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGN-------- 114
Query: 2083 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDE 1910
V+F PS + ++YVLQYPLRPCWRPYELDE
Sbjct: 115 -----------------REEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDE 157
Query: 1909 RCKEVRVKPTSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLM 1730
RC+EVRVKP S EVE+DL +DS NYD KMTKQTLSS+W PPRTT AVGVLM
Sbjct: 158 RCEEVRVKPASGEVEMDLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLM 217
Query: 1729 GNKLHLNPIHAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSK 1550
G+KLHLNPIHAVVQLRPSM +L P K+ N D +K E + K+AG S KQ+K
Sbjct: 218 GDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNK 277
Query: 1549 VKGDSNEQNTFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPG 1370
S EQ D E WV LKY+ SK++ SA+YLQ+M+A+ES IQF+MSP DYV+SLCPG
Sbjct: 278 RMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG 337
Query: 1369 ASANIRSGGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTH 1190
AS N ++ G S+R LLS+PLEERLKK L +G HRF+++KH P+ S +D+ +LQ H
Sbjct: 338 ASNNNKAQGPSRRLLLSIPLEERLKKLLSEGPP-FHRFSALKHFAPDASIEDIFEVLQKH 396
Query: 1189 ARLVQGLWVPKSTLLIPENEIERVSRDYVLFLFSENLKVVPSQFE-IPGKFGQALKKFVN 1013
A LVQGLWVPKS+LL PE+ + ++RDYVL LFS+N + +Q + + +K F+
Sbjct: 397 ALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLK 456
Query: 1012 LFGNKIHSSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGD--YIQDKARARFGM 839
+ + S +WK KE DE F KL+ + V Q+++W +AG+ I R G
Sbjct: 457 ILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIW-----RAGEDNVINHICRGAKGG 511
Query: 838 KTMPKPSSADRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSF 659
+ KP + +P SDK +R G+ MS+ETR A+PKAL+K+F+ V S
Sbjct: 512 PSRTKPGTVIKPEKAMNSDKGVRRVAPAVQAGR-TMSDETREAIPKALKKVFQTHKVCSL 570
Query: 658 QAICQGLRDLAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGS-YVLRSG 482
Q I +GLRDLA+S ST PK DA M + AAYG DAP+ EL+ V++E A+ +HG +VLRS
Sbjct: 571 QLIRKGLRDLALSQSTLPKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSS 630
Query: 481 AEKTEHTALRKVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYK 302
E E+ LR+VVI LL +G KL KAD++ AA ++L +I+ E + D CEYK
Sbjct: 631 PEHPEYDPLREVVINLLRVKG---KLKKADVSAAALLSLK-REISNNEYNKVMSDFCEYK 686
Query: 301 GRSYSLKSSDGKP 263
+ LKS DGKP
Sbjct: 687 SSWWVLKSGDGKP 699
>ref|XP_007046993.1| Transcription regulators,zinc ion binding, putative isoform 3
[Theobroma cacao] gi|508699254|gb|EOX91150.1|
Transcription regulators,zinc ion binding, putative
isoform 3 [Theobroma cacao]
Length = 736
Score = 504 bits (1299), Expect = e-140
Identities = 321/769 (41%), Positives = 423/769 (55%), Gaps = 55/769 (7%)
Frame = -2
Query: 2404 MDD--DLLGPSNQNKAPAR------KFAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAEL 2249
+DD +L GPS N + KFAP+LK P
Sbjct: 3 LDDLGELDGPSQVNTRTTKFAPKSSKFAPRLKPNFKLKPEPSSKQEPLNSGPKPEPPPPP 62
Query: 2248 NDALFPTKK--EEDSKPEVAETAPETLSTANGTAKMNIGNKGE---MMEESSDXXXXXXX 2084
+++ K+ EED KP V S +NG KM I + + +M E +
Sbjct: 63 PESISRKKENEEEDIKPPVIAETKTEQSFSNGAVKMEIEEEAKEDVIMNEGN-------- 114
Query: 2083 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDE 1910
V+F PS + ++YVLQYPLRPCWRPYELDE
Sbjct: 115 -----------------REEEDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDE 157
Query: 1909 RCKEVRVKPTSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLM 1730
RC+EVRVKP S EVE+DL +DS NYD KMTKQTLSS+W PPRTT AVGVLM
Sbjct: 158 RCEEVRVKPASGEVEMDLAVDVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLM 217
Query: 1729 GNKLHLNPIHAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSK 1550
G+KLHLNPIHAVVQLRPSM +L P K+ N D +K E + K+AG S KQ+K
Sbjct: 218 GDKLHLNPIHAVVQLRPSMCHLKPSVSKRKNAAAADAEVTVKVEEPNDGKAAGSSTKQNK 277
Query: 1549 VKGDSNEQNTFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPG 1370
S EQ D E WV LKY+ SK++ SA+YLQ+M+A+ES IQF+MSP DYV+SLCPG
Sbjct: 278 RMQSSTEQKADDKECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG 337
Query: 1369 ASANIRSGGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTH 1190
AS N ++ G S+R LLS+PLEERLKK L +G HRF+++KH P+ S +D+ +LQ H
Sbjct: 338 ASNNNKAQGPSRRLLLSIPLEERLKKLLSEGPP-FHRFSALKHFAPDASIEDIFEVLQKH 396
Query: 1189 ARLVQGLWVPKSTLLIPENEIERVSRDYVLFLFSENLKVVPSQFE-IPGKFGQALKKFVN 1013
A LVQGLWVPKS+LL PE+ + ++RDYVL LFS+N + +Q + + +K F+
Sbjct: 397 ALLVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLK 456
Query: 1012 LFGNKIHSSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGD--YIQDKARARFGM 839
+ + S +WK KE DE F KL+ + V Q+++W +AG+ I R G
Sbjct: 457 ILAIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIW-----RAGEDNVINHICRGAKGG 511
Query: 838 KTMPKPSSADRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSVYSF 659
+ KP + +P SDK +R G+ MS+ETR A+PKAL+K+F+ V S
Sbjct: 512 PSRTKPGTVIKPEKAMNSDKGVRRVAPAVQAGR-TMSDETREAIPKALKKVFQTHKVCSL 570
Query: 658 QAICQGLRDLAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGS-YVLRSG 482
Q I +GLRDLA+S ST PK DA M + AAYG DAP+ EL+ V++E A+ +HG +VLRS
Sbjct: 571 QLIRKGLRDLALSQSTLPKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVLRSS 630
Query: 481 AEKTEHTAL------------------------------------RKVVIELLCGRGPGA 410
E E+ L R+VVI LL +G
Sbjct: 631 PEHPEYDPLRLHKYVQLVFKWEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKG--- 687
Query: 409 KLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDGKP 263
KL KAD++ AA ++L +I+ E + D CEYK + LKS DGKP
Sbjct: 688 KLKKADVSAAALLSLK-REISNNEYNKVMSDFCEYKSSWWVLKSGDGKP 735
>ref|XP_007046992.1| Transcription regulators,zinc ion binding, putative isoform 2
[Theobroma cacao] gi|508699253|gb|EOX91149.1|
Transcription regulators,zinc ion binding, putative
isoform 2 [Theobroma cacao]
Length = 588
Score = 498 bits (1282), Expect = e-138
Identities = 277/549 (50%), Positives = 362/549 (65%), Gaps = 6/549 (1%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+F PS + ++YVLQYPLRPCWRPYELDERC+EVRVKP S EVE+DL +DS NYD
Sbjct: 31 FFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAVDVDSNNYDSE 90
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
KMTKQTLSS+W PPRTT AVGVLMG+KLHLNPIHAVVQLRPSM +L P K+
Sbjct: 91 RASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMCHLKPSVSKRK 150
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
N D +K E + K+AG S KQ+K S EQ D E WV LKY+ SK++ SA
Sbjct: 151 NAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTEQKADDKECWVPLKYHSSKNDFSA 210
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLCK 1280
+YLQ+M+A+ES IQF+MSP DYV+SLCPGAS N ++ G S+R LLS+PLEERLKK L +
Sbjct: 211 QYLQRMMAEESCRIQFTMSPYDYVDSLCPGASNNNKAQGPSRRLLLSIPLEERLKKLLSE 270
Query: 1279 GDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYVL 1100
G HRF+++KH P+ S +D+ +LQ HA LVQGLWVPKS+LL PE+ + ++RDYVL
Sbjct: 271 GPP-FHRFSALKHFAPDASIEDIFEVLQKHALLVQGLWVPKSSLLFPEDPYKSLARDYVL 329
Query: 1099 FLFSENLKVVPSQFE-IPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTV 923
LFS+N + +Q + + +K F+ + + S +WK KE DE F KL+ + V
Sbjct: 330 LLFSKNPIISLAQVHALSPSRKEEVKGFLKILAIERPSFKDWKLKENADEGFKKLYPDIV 389
Query: 922 LEQKKLWENTGKKAGD--YIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAA 749
Q+++W +AG+ I R G + KP + +P SDK +R
Sbjct: 390 KNQEQIW-----RAGEDNVINHICRGAKGGPSRTKPGTVIKPEKAMNSDKGVRRVAPAVQ 444
Query: 748 TGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAY 569
G+ MS+ETR A+PKAL+K+F+ V S Q I +GLRDLA+S ST PK DA M + AAY
Sbjct: 445 AGR-TMSDETREAIPKALKKVFQTHKVCSLQLIRKGLRDLALSQSTLPKADARMVVKAAY 503
Query: 568 GVDAPQEELKAVINETAINIHGS-YVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKAD 392
G DAP+ EL+ V++E A+ +HG +VLRS E E+ LR+VVI LL +G KL KAD
Sbjct: 504 GADAPEHELQEVVSEVAVELHGGLFVLRSSPEHPEYDPLREVVINLLRVKG---KLKKAD 560
Query: 391 INTAAGIAL 365
++ AA ++L
Sbjct: 561 VSAAALLSL 569
>ref|XP_007201935.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
gi|462397466|gb|EMJ03134.1| hypothetical protein
PRUPE_ppa002228mg [Prunus persica]
Length = 698
Score = 484 bits (1246), Expect = e-134
Identities = 294/685 (42%), Positives = 397/685 (57%), Gaps = 16/685 (2%)
Frame = -2
Query: 2269 KSEPAELNDALFPTKKEEDSKPEVAETAPETLSTANGTAKMNIGNKGEMMEESSDXXXXX 2090
KSEP + P + E KPE+ + PE L + G G E S+
Sbjct: 31 KSEPVVKQEPPKPVTEPEPEKPEL-KPKPEELDALIAEKEEEEGTDGAPKNEDSNGGLKM 89
Query: 2089 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYFNPSSTD--KIYVLQYPLRPCWRPYEL 1916
+FNP D ++YVLQYPLRP WRPYEL
Sbjct: 90 ETDEEPKEDDPMEEDDVEDTIVREIDV-----FFNPHIDDNSQLYVLQYPLRPWWRPYEL 144
Query: 1915 DERCKEVRVKPTSAEVEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSN--AV 1742
+ RC+EVR+KP ++E+E+DL +D +NYD + + KMTKQTL +TWKP RTT AV
Sbjct: 145 ENRCEEVRLKPATSEMEIDLSLNLDPKNYDEDCGNRLKMTKQTLYTTWKPTRTTGTGYAV 204
Query: 1741 GVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSK 1562
GVLMG+KLHLNPI VVQLRPS+E+L ++ N VT D K+K E S E S+GPSK
Sbjct: 205 GVLMGDKLHLNPIDKVVQLRPSLEHLKSGSSRRKNSVTGDAEVKVKLEESRQETSSGPSK 264
Query: 1561 KQSKVKGDSNEQNTFDAESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNS 1382
KQ+K S E+ T D ESWV L+Y+ S+S+ SA+YL++MV QESSPIQF+MSP DYVNS
Sbjct: 265 KQTKRMESSTEKKTEDEESWVPLQYHSSESDFSAKYLRRMVGQESSPIQFTMSPYDYVNS 324
Query: 1381 LCPGASANIRSGGLSKRFLLSLPLEERLKKYLCKGDVLIHRFTSI-KHLGPEISDDDLLR 1205
LCP G S+RFLLSLPLEER+KK L + + L RF+ + K+ P+ + ++LL
Sbjct: 325 LCPRTCK-----GSSRRFLLSLPLEERIKKLLVE-EPLARRFSDLKKYFAPDHTGEELLD 378
Query: 1204 ILQTHARLV--QGLWVPKSTLLIPENEIE-------RVSRDYVLFLFSENLKVVPSQFEI 1052
+LQ HA+L+ GLWVPK+ LL P +++ + +R+YVL LF +N + SQ +
Sbjct: 379 VLQKHAQLLLDSGLWVPKTLLLYPSKDMKDRDHVARQTARNYVLNLFRKNTVISNSQLNL 438
Query: 1051 PGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDY 872
P + + + SS +WK KE+ D+SF +L+ + Q++ WE +K +
Sbjct: 439 PQNHKNHAYESLKILAVSRPSSQDWKLKEQSDKSFKELYPDIFKSQEQNWERMEEKLVNA 498
Query: 871 IQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQ 692
KA G+K S +PG SDK + + G MS+ETR ALP+A++
Sbjct: 499 F--KAHTDRGVKNACMTS---KPGKSLNSDKGTTKSASDVQIGGRTMSDETRAALPEAIK 553
Query: 691 KLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMD--IAAAYGVDAPQEELKAVINETA 518
++ E V +F+ IC+GLR LAV S+ PK D I AAYGVDAPQ EL+ VI + A
Sbjct: 554 EVLHEHKVCNFRLICEGLRRLAVRKSSLPKVDPKTKRVIDAAYGVDAPQHELQKVICQVA 613
Query: 517 INIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIE 338
+IHG YVL+S E +EH LRKVVI+LLC +GP AKL + ++ AA IAL DI E
Sbjct: 614 ADIHGLYVLKSSPEHSEHDRLRKVVIDLLCTKGPNAKLKRGEVFEAAKIALE-RDINTNE 672
Query: 337 LKSAIGDICEYKGRSYSLKSSDGKP 263
+ D C +KG ++ LKS DG P
Sbjct: 673 YNKVMNDFCVFKGSAWILKSGDGGP 697
>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 677
Score = 483 bits (1244), Expect = e-133
Identities = 297/691 (42%), Positives = 398/691 (57%), Gaps = 4/691 (0%)
Frame = -2
Query: 2398 DDLLGPSNQNKAPARKFAPKLKGXXXXXXXXXXXXXXXERAVLKSEPAELNDALFPTKKE 2219
DDL PS P+ K+APK + SE E +A K E
Sbjct: 5 DDLDKPSQVPSRPS-KYAPKSAKFKPQPKTKPNPKPDPQLPSSNSELQEPQNAPLSKKNE 63
Query: 2218 EDSKPEVAETAPETLSTANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXXXXXXXXXXXX 2039
+D + E+ P+ +ST A ++ N G + E D
Sbjct: 64 DDEEEEIK---PKIISTPKNEAWLS--NNGAVKMEIDDSMDEDKREEGENEEEEEEDMIV 118
Query: 2038 XXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVE 1865
+F PS S ++YV+QYPLRPCWRPYELDERC+EVRVKP S EVE
Sbjct: 119 REIDV----------FFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVE 168
Query: 1864 VDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQL 1685
VDL DS N+D KQTLS+++ PPR T AVGVL+GNKLHLNPIHAVVQL
Sbjct: 169 VDLT-IDDSSNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQL 227
Query: 1684 RPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAES 1505
RPS+E++N + K+ N T L ++K E S+ K G SKKQ
Sbjct: 228 RPSLEHVNSNDSKRKNSAT--LNPEVKLEDSNEGKPIGSSKKQC---------------- 269
Query: 1504 WVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGAS-ANIRSGGLSKRF 1328
W++LKY+ SKS+ S+ YL+KM+AQESSP++F+M+P DY++SLCP AS +S G +RF
Sbjct: 270 WISLKYHGSKSDFSSRYLEKMIAQESSPMEFTMTPYDYMSSLCPVASNEKTKSKGPPRRF 329
Query: 1327 LLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTL 1148
LLSLPL ERLKK + +G + RF+ +KH P+ S +D+L++LQ + +LVQGLW PKS+L
Sbjct: 330 LLSLPLAERLKKLILEGPP-VQRFSVLKHFAPDDSVEDVLKVLQEYGQLVQGLWAPKSSL 388
Query: 1147 LIPENEIERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFK 968
L P+ ++ RDYVL LFS+NL + SQ P K + +K F+NLF + S +WKFK
Sbjct: 389 LFPDANSKQGIRDYVLLLFSKNLVINSSQVNFPVKIKEEIKSFLNLFAVERPSFKDWKFK 448
Query: 967 ERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKA 788
E D +FIKL+ + V +Q++ W+NT K+ +A +PKP
Sbjct: 449 EHTDTTFIKLYPDIVKKQEEAWDNTEKRLSKVFDRSGKASM-KNAIPKPPMVHNTVKHLD 507
Query: 787 SDKSAQRPPT-VAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSST 611
S+KS + + + K ++ ETR AL KAL K+F+ V SFQ ICQGLRDLAVS ST
Sbjct: 508 SEKSMPKIASGMRRLTKTTITVETREALLKALPKVFQSHKVCSFQLICQGLRDLAVSQST 567
Query: 610 HPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELL 431
PK D + +AAA G DAP EEL+ +I++ A NIHG YVL+S E ++ LRKV+I+LL
Sbjct: 568 LPKADPRIAVAAASGADAPPEELQEIISQVATNIHGFYVLKSSPEHPQYDELRKVIIDLL 627
Query: 430 CGRGPGAKLSKADINTAAGIALGINDITPIE 338
RGP AKL KA++ AA +A D+T IE
Sbjct: 628 LARGPNAKLKKAEVFEAARLAFK-RDVTNIE 657
>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
gi|550334731|gb|EEE90658.2| hypothetical protein
POPTR_0007s12540g [Populus trichocarpa]
Length = 667
Score = 481 bits (1237), Expect = e-133
Identities = 310/724 (42%), Positives = 403/724 (55%), Gaps = 12/724 (1%)
Frame = -2
Query: 2398 DDLLGPSNQNKAPARKFAPKLKGXXXXXXXXXXXXXXXERAV-LKSEPAELNDALFPTKK 2222
D L PS K P+R FAP K V K +P+ N A
Sbjct: 4 DGLDEPSKVRKPPSR-FAPTSKKPQPKSKPKPKPEPQESVPVGPKPDPSVSNTA------ 56
Query: 2221 EEDSKPEVAETAPET-LSTANGTAKMNIGNKGEMMEESSDXXXXXXXXXXXXXXXXXXXX 2045
ED+KP++ +T +T +NG KM I K E +
Sbjct: 57 -EDAKPKIDDTLSKTETGVSNGNVKMEIDAKEERGAAVKENDLMDVDKEEDEDDVVVREI 115
Query: 2044 XXXXXXXXXXXXXXXXVYFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAE 1871
Y+ PS ++YV+QYPLRPCWRPYELDERCKEVRVKP S E
Sbjct: 116 DV---------------YYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTE 160
Query: 1870 VEVDLEPYMDSRNYDVNSPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVV 1691
VEVDL D++NYD + M KQTLSS+W PP T AVGVL+GNKLHLNPIHAVV
Sbjct: 161 VEVDLS-IDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVV 219
Query: 1690 QLRPSMEYLNPDGLKKDNDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDA 1511
QLRPSM+YL+ K + T E S+ K G KKQSK NEQ
Sbjct: 220 QLRPSMDYLSSGNSKGKKNAT-------SGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVE 272
Query: 1510 ESWVALKYYDSKSETSAEYLQKMVAQESSPIQFSMSPSDYVNSLCPGAS-ANIRSGGLSK 1334
ESW+ LKY+ SKS+ S+ YLQ MVA ESS I+F+M+P DY++SLCPG S NI+ G S+
Sbjct: 273 ESWIPLKYHGSKSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSR 332
Query: 1333 RFLLSLPLEERLKKYLCKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKS 1154
R LLSLPLEER+K+ +G IHRF +++HL P S +DLL +LQ + +LVQGLWVPK+
Sbjct: 333 RVLLSLPLEERIKRLFLEGPP-IHRFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKT 391
Query: 1153 TLLIPE----NEIERVSRDYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSS 986
+LL P +++ +RDY+L LFS++L V PS+ +P K LK F+N+F + S
Sbjct: 392 SLLFPNPKPTEKVKLAARDYILLLFSKSLVVTPSELNVPMK-PLILKSFLNIFAVERPSF 450
Query: 985 NEWKFKERRDESFIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADR 806
+WKFKE D F++L+ + V +Q++ WE GK ++ DR
Sbjct: 451 KDWKFKENVDTLFVELYPDIVRKQEQAWEVMGKNIS-------------------AAFDR 491
Query: 805 PGPLKASDKSAQRPPTVAATGKMKMSNETRLALPKALQKLFKEQSV--YSFQAICQGLRD 632
G K+ K+ P K M++ETR AL KAL K+ + V Y FQ ICQGLR
Sbjct: 492 AG--KSVSKNVITKP------KKTMTDETREALRKALPKVLQTHKVCRYGFQMICQGLRQ 543
Query: 631 LAVSSSTHPKTDASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTAL- 455
LA+S ST PK D + +AAA G +AP EEL+ VI+E A NIHG YVL+S E + L
Sbjct: 544 LAISQSTLPKADPRIAVAAASGAEAPPEELQEVISEVATNIHGFYVLKSSPEHPDFDPLS 603
Query: 454 RKVVIELLCGRGPGAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSS 275
RKVVI L RGP A + K+++ AA + L + + E + D+CE KG ++ LKS
Sbjct: 604 RKVVIGLFLARGPNANIKKSEVQAAARLELK-REPSNSEYIKVMTDLCESKGSAWVLKSG 662
Query: 274 DGKP 263
DGKP
Sbjct: 663 DGKP 666
>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC5-like [Citrus sinensis]
gi|557527707|gb|ESR38957.1| hypothetical protein
CICLE_v10025048mg [Citrus clementina]
Length = 690
Score = 479 bits (1233), Expect = e-132
Identities = 277/584 (47%), Positives = 375/584 (64%), Gaps = 6/584 (1%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+F PS + K+YV+QYPLRP WRPYELDERC+EVRVKP+++EVE+DL +DS N+D
Sbjct: 120 FFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDVDSNNWDSE 179
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
M KQTLS+TW PP+ T A+GVL+GNKLHLNPIHAVVQLR SM +L G K+
Sbjct: 180 KASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFLKSGGSKRK 239
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
N+V ++ +K E S+ +KS G SKKQ+K G S EQ + + E WV LKY+ SKS+ SA
Sbjct: 240 NNVASEI--PVKLEDSNQDKSVGSSKKQNKRMG-SIEQRSNEEECWVPLKYHGSKSDFSA 296
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGA-SANIRSGGLSKRFLLSLPLEERLKKYLC 1283
YLQ+M+ +E+SPI F+M+P DYV+SLCPGA S N +S G S+RFLLS+PLEER KK LC
Sbjct: 297 RYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSMPLEERFKKLLC 356
Query: 1282 KGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYV 1103
+G+ + RF+++ H P + +D++ +L + LVQGLW P+S LL ++++ ++RDYV
Sbjct: 357 EGEP-VQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNNDKMKCLARDYV 415
Query: 1102 LFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTV 923
L FS+N V + K +K F+N+F + +WKF+++ D SFIK H N V
Sbjct: 416 LLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDLSFIKEHPNIV 475
Query: 922 LEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAATG 743
++Q+++W K+ D I ++ ++ SA LKA + S P+ A TG
Sbjct: 476 IKQEQVWAAAEKQITDVINKLGKSGSTLRN-DAGKSAMVNKHLKAINSS--NGPSGALTG 532
Query: 742 KMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAYGV 563
+SNE+R ALPKALQKLF+ V S I QGLRDLA+S ST PK DA M + AA V
Sbjct: 533 NKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMTVLAAEIV 592
Query: 562 DA---PQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKAD 392
D+ +E VI++ A NIHG YV +S +E +H LRKVV +LL GP AKL KAD
Sbjct: 593 DSSFVDTQEFAEVISQVATNIHGFYVSKS-SEDPQHGPLRKVVTDLLLAGGPDAKLKKAD 651
Query: 391 INTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDGKPK 260
+ AA L +I+ E + DICE KG ++ LK KPK
Sbjct: 652 VVEAARHVLK-REISNAEYSKVMSDICESKGSAWILK----KPK 690
>ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Glycine
max]
Length = 697
Score = 463 bits (1192), Expect = e-127
Identities = 268/589 (45%), Positives = 368/589 (62%), Gaps = 14/589 (2%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+F+PS + ++YV QYPLRP WRPY+LDE+C+EVR+K ++EVE+DL +DS + D
Sbjct: 117 FFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSIDLDSDHIDKE 176
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
+TKQTLS+TWKP AVG+LMG+KLHL+P+HAVVQLRP++++LN G K+
Sbjct: 177 FATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQHLNSGGSKRK 236
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDS-NEQNTFDAESWVALKYYDSKSETS 1463
N + A +K E S+ EKS SKKQ+K G S EQ + E WV LKY+ KS+ S
Sbjct: 237 NAASTGANATVKIEGSNEEKSVATSKKQNKQTGPSIIEQKSDGDECWVPLKYHSCKSDIS 296
Query: 1462 AEYLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLC 1283
+ YLQ+MV QESSPI F+M DYV +LCPG S+N GLSKR+LLSLP+EERLKK L
Sbjct: 297 SRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNLPKGLSKRYLLSLPVEERLKKML- 355
Query: 1282 KGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYV 1103
D +HRF++IKH PE S+++LL LQ HA LV GLW KS+LL P+ +E ++RDY
Sbjct: 356 -EDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLYPDGGVETLARDYS 414
Query: 1102 LFLFSENLKVVPSQFEI-PGKFGQALKKFVNLFG---NKIHSSN-----EWKFKERRDES 950
L LFS++LKV S I G+ ++ + +FG N + S WKF+E DES
Sbjct: 415 LLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKPNPYWKFRELPDES 474
Query: 949 FIKLHHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQ 770
F KL+ + V +Q++L++ K+ + + + + G + + S+ S Q
Sbjct: 475 FKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNTE---VHKSESSDQ 531
Query: 769 RPPTVAAT--GKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTD 596
R ++ KM MSNETR ALP AL+KLF+ V SF+ IC+GLR++AVS + K D
Sbjct: 532 RVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLREMAVSKAMLSKGD 591
Query: 595 ASMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGP 416
+ M + AA+ +D P EL AVI+E A I+GSYVL+S + R VVI++LCG GP
Sbjct: 592 SKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPD----DPFRDVVIDMLCGSGP 647
Query: 415 GAKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDG 269
AKL KA+I AA LG ++ E + ++C KG + LKS DG
Sbjct: 648 NAKLKKAEILEAARRKLG-REVASNEYTKVMSELCVSKGSVWVLKSGDG 695
>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
Length = 732
Score = 453 bits (1166), Expect = e-124
Identities = 263/558 (47%), Positives = 345/558 (61%), Gaps = 6/558 (1%)
Frame = -2
Query: 1993 YFNPSSTD--KIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+FNP + ++YVLQYPLRP WRPYELDERC+EVRVKP S+EVE+DL +DS+NYD +
Sbjct: 117 FFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVEMDLSLDVDSKNYDPD 176
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
MTKQTL +W PR T AVGVLMGNKLHLN IHAV+QLRPS+++L G KK
Sbjct: 177 CGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQLRPSLKHLISAGSKKK 236
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
N+V D +K E S G+K+ G SKKQ K + S +Q D E WV LKY+ S+SE+S
Sbjct: 237 NNVKVDAEDTVKLEESSGKKAIGSSKKQIKQENSSVKQKIADEEGWVPLKYHGSESESSV 296
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGASAN-IRSGGLSKRFLLSLPLEERLKKYLC 1283
YL+KM QESSP+QF+MSP DY+NSLCPG+ N G S+R LLSLPLEER+K LC
Sbjct: 297 RYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPKGPSRRALLSLPLEERIKSLLC 356
Query: 1282 KGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLI---PENEIERVSR 1112
+G +HRF+ +KH P+ + ++L LQ HA LVQGLW PKS+LL+ E +R++R
Sbjct: 357 EGLAPVHRFSVLKHFAPDCTTKEILDALQNHALLVQGLWAPKSSLLLGTSKETGAQRIAR 416
Query: 1111 DYVLFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHH 932
DYVL LF +N S P A+ KF+N+ G + S +WKFK + D SFIK +
Sbjct: 417 DYVLLLFWKNPVFSFSSLHFPSSLKTAVNKFLNILGVERPSVKDWKFKGQTDISFIKNYP 476
Query: 931 NTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVA 752
+ V +Q+++W + + + D R G K PS RP S+K + +
Sbjct: 477 DVVKKQEEVWGDLERDIMNMFGDGKSGR-GPKNTSIPS---RPVKPLNSNKGVPKGTSEV 532
Query: 751 ATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAA 572
GK + + K L K+ +E V S Q +CQGLR+LA++ PK D AAA
Sbjct: 533 VGGKKIPDDIREVLCSKILPKVIQEHKVCSLQLMCQGLRELALNKLNLPKADDRFARAAA 592
Query: 571 YGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKAD 392
G +P E +K +++ETAINIHG YVL+S AE ++ R VVI+LL G AKL KA+
Sbjct: 593 CGTASPGELVK-LLDETAINIHGLYVLKSSAEHPQYDPFRNVVIDLLRQNGLAAKLKKAE 651
Query: 391 INTAAGIALGINDITPIE 338
I AA AL D+T E
Sbjct: 652 IFDAAKNALK-RDVTSNE 668
>ref|XP_002863995.1| hypothetical protein ARALYDRAFT_495012 [Arabidopsis lyrata subsp.
lyrata] gi|297309830|gb|EFH40254.1| hypothetical protein
ARALYDRAFT_495012 [Arabidopsis lyrata subsp. lyrata]
Length = 676
Score = 444 bits (1142), Expect = e-122
Identities = 266/582 (45%), Positives = 345/582 (59%), Gaps = 9/582 (1%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+FNPS + K+YVLQYPLRP WRPYE+DERC+EVRV ++++VE+DL + S+NYD N
Sbjct: 113 FFNPSFDANTKLYVLQYPLRPSWRPYEMDERCEEVRVNTSTSQVEIDLSMDVHSKNYDSN 172
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
MTKQTL +TWK P T AVGVL G+KLHLNP+HAV QLRPSM+YL+ +G KK
Sbjct: 173 --FGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQYLSSNGKKKQ 230
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
+ T E+S G SKKQ+K S +Q + E+WVALKY+ +SE +
Sbjct: 231 EEST--------------EESVGTSKKQNKGVQASTDQKPINEETWVALKYHGLQSEYCS 276
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGASA-NIRSGGLSKRFLLSLPLEERLKKYLC 1283
YL M+A +S + F+MSP Y+N LC G S+ N SKR LLSLPLEER+KK LC
Sbjct: 277 TYLNGMMANGNSSLDFNMSPDVYINELCRGGSSRNSELKETSKRVLLSLPLEERVKKLLC 336
Query: 1282 KGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYV 1103
+G L+ R+ +KH PE SD+D L LQ LVQGLW PK+ LL + + R+YV
Sbjct: 337 EGSPLL-RYNVLKHYAPEFSDEDFLGALQEDGWLVQGLWTPKTKLLGLDENCRSI-REYV 394
Query: 1102 LFLFSENLKVVPSQFEIPGKFGQAL---KKFVNLFGNKIHSSNEWKFKERRDESFIKLHH 932
L LFS+N + S+ E G + + K + F + N+WKFKE D SFIK +
Sbjct: 395 LSLFSQNTTIKYSEVEATGFQREKMIIMKSMLTEFAKERPLLNDWKFKEPTDVSFIKSYP 454
Query: 931 NTVLEQKKLWENTGKKAGDYIQD-KARARFGMKTMPKPSSAD-RPG-PLKASDKSAQRPP 761
V EQ LW N K + K+RA + K SS +P P SDK
Sbjct: 455 EIVKEQDILWTNRKKIIESILTTRKSRADNRRNVVGKNSSVTVKPEVPTTLSDKGGSSRN 514
Query: 760 TVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDI 581
T+ KM E R ALPKAL+K+F+ V ++ ICQGLRDLAVS+S +PK D+ M +
Sbjct: 515 TIPRVVGQKMPEELRWALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMAV 574
Query: 580 AAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLS 401
A VDA Q+ELK VI+E A NIHGSYV S + E+ +LR VVI L CG GPGAKL
Sbjct: 575 NVALAVDAYQDELKDVISEVAANIHGSYVSISSPDHPEYDSLRGVVISLFCGTGPGAKLM 634
Query: 400 KADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSS 275
KA++ A L +IT E + D+CE + L+ +
Sbjct: 635 KAEVFAAGRNELN-REITNNEYIKVMHDLCETNSSGWVLQKA 675
>ref|XP_006425716.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
gi|557527706|gb|ESR38956.1| hypothetical protein
CICLE_v10025048mg [Citrus clementina]
Length = 637
Score = 439 bits (1130), Expect = e-120
Identities = 251/529 (47%), Positives = 343/529 (64%), Gaps = 6/529 (1%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+F PS + K+YV+QYPLRP WRPYELDERC+EVRVKP+++EVE+DL +DS N+D
Sbjct: 120 FFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSIDVDSNNWDSE 179
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
M KQTLS+TW PP+ T A+GVL+GNKLHLNPIHAVVQLR SM +L G K+
Sbjct: 180 KASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMGFLKSGGSKRK 239
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
N+V ++ +K E S+ +KS G SKKQ+K G S EQ + + E WV LKY+ SKS+ SA
Sbjct: 240 NNVASEI--PVKLEDSNQDKSVGSSKKQNKRMG-SIEQRSNEEECWVPLKYHGSKSDFSA 296
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGA-SANIRSGGLSKRFLLSLPLEERLKKYLC 1283
YLQ+M+ +E+SPI F+M+P DYV+SLCPGA S N +S G S+RFLLS+PLEER KK LC
Sbjct: 297 RYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGSNNTKSKGPSRRFLLSMPLEERFKKLLC 356
Query: 1282 KGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYV 1103
+G+ + RF+++ H P + +D++ +L + LVQGLW P+S LL ++++ ++RDYV
Sbjct: 357 EGEP-VQRFSTLMHFAPNDTVEDVIGVLHKNGLLVQGLWAPRSPLLFNNDKMKCLARDYV 415
Query: 1102 LFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTV 923
L FS+N V + K +K F+N+F + +WKF+++ D SFIK H N V
Sbjct: 416 LLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFAVERPDFKDWKFRQQTDLSFIKEHPNIV 475
Query: 922 LEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAATG 743
++Q+++W K+ D I ++ ++ SA LKA + S P+ A TG
Sbjct: 476 IKQEQVWAAAEKQITDVINKLGKSGSTLRN-DAGKSAMVNKHLKAINSS--NGPSGALTG 532
Query: 742 KMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAYGV 563
+SNE+R ALPKALQKLF+ V S I QGLRDLA+S ST PK DA M + AA V
Sbjct: 533 NKNLSNESREALPKALQKLFQIHKVCSLPLIKQGLRDLAISQSTLPKADARMTVLAAEIV 592
Query: 562 DA---PQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCG 425
D+ +E VI++ A NIHG YV +S +E +H LR + LL G
Sbjct: 593 DSSFVDTQEFAEVISQVATNIHGFYVSKS-SEDPQHGPLR---LNLLIG 637
>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
Length = 643
Score = 439 bits (1130), Expect = e-120
Identities = 259/540 (47%), Positives = 334/540 (61%), Gaps = 4/540 (0%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
Y PS K+YVLQYPLRP WRPYELD+RC+EVRVK SAEVEVDL +DS+NYD +
Sbjct: 114 YLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVDSKNYDSD 173
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
+ MTKQTL+S+WKPP T AVGVL+GNKLHLNPIHAVVQLRPSM++ P+ K+
Sbjct: 174 ADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKRR 233
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
+ +L K E E + G KKQ K G EQN E W+ L Y+ ++S+ S
Sbjct: 234 TTASSNLEDNTKGE----EVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARSDISM 289
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLCK 1280
Y++KMV +SS IQFSM+ DYVN+LCPG S R LLSLPLEER + +L +
Sbjct: 290 SYVRKMVEHDSSHIQFSMN-HDYVNTLCPGTSNENNGSNGPSRVLLSLPLEERFRTWLLQ 348
Query: 1279 GDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENE-IERVSRDYV 1103
G IHRF ++KHL P+ S +D+L +L HA+LVQGLW+PKS+LL +++ I+ ++RDYV
Sbjct: 349 GPP-IHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDALARDYV 407
Query: 1102 LFLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTV 923
L LFS + SQ K +A++ ++ + S N+WKFKE D +FIKL+ V
Sbjct: 408 LLLFSRTPIINNSQLPQQQKLNRAMRDVLDTVAFERVSLNDWKFKEPPDMTFIKLNPKIV 467
Query: 922 LEQKKLWENTGKKAGDYI-QDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAAT 746
EQ++ WE K + I DK R K +P + + P K+ K A A
Sbjct: 468 REQEQTWERLEKLITEKIFGDKNRP--ATKNSSRPLTTNNPATSKSLSKHASNSLN-AGV 524
Query: 745 GKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAYG 566
+ MS ETR ALPKALQKLF+ V FQ ICQ LR++AVS S+ PK A IAAA+G
Sbjct: 525 PRRPMSEETREALPKALQKLFQSHKV-CFQQICQRLREMAVSESSRPKGFAREAIAAAHG 583
Query: 565 VDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKADIN 386
V+AP EEL+A+I++ AINIHG YVL+S EH VV EL +G L D N
Sbjct: 584 VEAPPEELQAIISQVAINIHGVYVLKSSPVHPEHDEF--VVQELCVSQGSAWVLKSGDGN 641
>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
gi|358344405|ref|XP_003636280.1| DNA-directed RNA
polymerase III subunit RPC5 [Medicago truncatula]
gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
Length = 683
Score = 434 bits (1116), Expect = e-119
Identities = 258/588 (43%), Positives = 352/588 (59%), Gaps = 13/588 (2%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
YF+PS + K+YV+QYPLRP WRPY+LDE+C+EVR+KP ++EVEVDL ++S N +
Sbjct: 115 YFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSIDLESYNVEKA 174
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
+ K TKQTLS+TWKPP AVG+LMG+KLHL+PIHAVVQLRPS YL+ G +K
Sbjct: 175 TADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRHYLDSGGSEKK 234
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSA 1460
N T +++ K PS +Q S EQ + + WV L+Y+ KS+ S+
Sbjct: 235 NVAT----------SNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDISS 284
Query: 1459 EYLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLCK 1280
Y Q+MV ESSPI F MS DY+ +LCPG S+N + G SKR+LLSLP+E+RL+ L +
Sbjct: 285 RYFQQMVTHESSPINFEMSTYDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLLIE 344
Query: 1279 GDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDYVL 1100
G L HRF++IKH PE SDD+LL +L+ A+L++G WVP+S+LL P IE ++R+Y+L
Sbjct: 345 GPPL-HRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSLLFPTGGIESLARNYIL 403
Query: 1099 FLFSENLKVVPSQFEI--PGKFGQALKKFVNLFG----NKIHSSNEWKFKERRDESFIKL 938
F ++L V + G+ G +K FV F + N WKFKE DESFIK
Sbjct: 404 VRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSKENYWKFKELPDESFIKE 463
Query: 937 HHNTVLEQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPT 758
V +Q+++++ + I G K K S+ G A S P
Sbjct: 464 FPIVVKKQEEIFKILENEVNSII-----GTLGGKRKLK-SAITNSGVNNALFTSTNSDPR 517
Query: 757 VAATGK-----MKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDA 593
+ G+ M MS+ETR ALP AL+KLF+ V SFQ ICQ LR LA++ + PK +
Sbjct: 518 ATSLGEDPPRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQELRGLALAQTMLPKGGS 577
Query: 592 SMDIAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPG 413
M + AA +D PQ+ELKA++ E A +IHG YVL+S ++ R VVI++L G GP
Sbjct: 578 KMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKS----AQNDPFRDVVIDMLRGSGPN 633
Query: 412 AKLSKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDG 269
KL KA+I AA LG D+ E A+ ++C KG + LKS DG
Sbjct: 634 GKLKKAEILEAARRKLG-RDVPNNEYIKAVSELCVSKGSFWVLKSGDG 680
>ref|XP_006355441.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform
X1 [Solanum tuberosum]
Length = 669
Score = 433 bits (1114), Expect = e-118
Identities = 255/581 (43%), Positives = 364/581 (62%), Gaps = 4/581 (0%)
Frame = -2
Query: 1990 FNPSSTDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVNSPH 1811
F+PS+ ++YV QYPLR WRPYEL+ERC+EVR++P++AE+EVDL +DS+N+D +S H
Sbjct: 106 FDPST--QLYVFQYPLRAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVH 163
Query: 1810 AAKMTKQTLSSTWKPPRTTSN--AVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKDN 1637
AA + KQ LS++W P T ++ AVGVL+G+KLHLNP+HAVVQLRPS L LKK N
Sbjct: 164 AATIKKQMLSTSWMPLPTCASGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKK-N 222
Query: 1636 DVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSAE 1457
T + +++E ++ GPSKKQ+K G + E W+ LKY+ ++S+ SA
Sbjct: 223 VTTNNDEKSVENEDVKEKRPMGPSKKQNKPPGIEKD----IGEHWLHLKYHGARSDISAR 278
Query: 1456 YLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLCKG 1277
YLQKM +E SP+ FSMSP DY+N+ PG + + + L LPLEER++ +L +G
Sbjct: 279 YLQKMAMEEGSPVPFSMSPVDYLNAFFPGRPTDTDRLKILRTRLSQLPLEERVRTWLLEG 338
Query: 1276 DVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENE-IERVSRDYVL 1100
IHRF ++KHL P+ S D+++R+LQ +A+LVQGLWVPKS+L+ N +E ++R++VL
Sbjct: 339 PP-IHRFDALKHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVL 397
Query: 1099 FLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTVL 920
+ F++ + + S F +F +A + + N+WK KE D+ F L+ + V
Sbjct: 398 YEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVR 457
Query: 919 EQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAATGK 740
E++ WE GK+ D + R R MK P +AD P L + DK PT ++ +
Sbjct: 458 EKQATWECLGKQINDVLPG-GRNRPTMKN-PLNPNADIPA-LPSGDK-----PTSSSLLR 509
Query: 739 MKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAYGV- 563
MS E R ALPKALQ++F+ V SFQ I QGLR L VS S PK I A+ V
Sbjct: 510 TSMSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASIDVF 569
Query: 562 DAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKADINT 383
DAPQEE++AVIN+ A+NIHG YVL+S + ++ LRKVVI+L GP AKL KA +
Sbjct: 570 DAPQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKVVIDLFMAEGPSAKLKKASVTE 629
Query: 382 AAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDGKPK 260
AA + L DIT +E + ++C + ++ L+S DGKP+
Sbjct: 630 AAKLQLN-RDITNVEFLKVMKELCHSEKSAWVLRSGDGKPE 669
>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
lycopersicum]
Length = 669
Score = 432 bits (1112), Expect = e-118
Identities = 255/581 (43%), Positives = 364/581 (62%), Gaps = 4/581 (0%)
Frame = -2
Query: 1990 FNPSSTDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVNSPH 1811
F+PS+ ++YV QYPL+ WRPYEL+ERC+EVR++P++AE+EVDL +DS+N+D +S H
Sbjct: 106 FDPST--QLYVFQYPLKAVWRPYELEERCQEVRLRPSTAEMEVDLAIDLDSKNFDRDSVH 163
Query: 1810 AAKMTKQTLSSTWKP-PRTTSN-AVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKDN 1637
AA + KQ LS++W P P TS AVGVL+G+KLHLNP+HAVVQLRPS L LKK N
Sbjct: 164 AATVKKQMLSTSWIPLPTCTSGYAVGVLIGDKLHLNPVHAVVQLRPSKRNLKESELKK-N 222
Query: 1636 DVTRDLGAKIKSEASDGEKSAGPSKKQSKVKGDSNEQNTFDAESWVALKYYDSKSETSAE 1457
+T + +++E ++ GPSKKQ+K G + E W+ LKY+ ++S+ SA
Sbjct: 223 IITNNDEKSVENEDVKEKRPVGPSKKQNKSPGIEKD----IGEHWLHLKYHGARSDISAR 278
Query: 1456 YLQKMVAQESSPIQFSMSPSDYVNSLCPGASANIRSGGLSKRFLLSLPLEERLKKYLCKG 1277
YLQKM +E SP+ FSMSP DY+N+ CPG + + + L LPLEER++ +L +G
Sbjct: 279 YLQKMSMEEGSPVPFSMSPVDYLNAFCPGRPTDTDRLKILRTRLSQLPLEERVRIWLLEG 338
Query: 1276 DVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENE-IERVSRDYVL 1100
IHRF ++ HL P+ S D+++R+LQ +A+LVQGLWVPKS+L+ N +E ++R++VL
Sbjct: 339 PP-IHRFDALMHLAPDNSADEIIRVLQIYAQLVQGLWVPKSSLVYGTNSGVEVLARNFVL 397
Query: 1099 FLFSENLKVVPSQFEIPGKFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHNTVL 920
+ F++ + + S F +F +A + + N+WK KE D+ F L+ + V
Sbjct: 398 YEFTKGILIKKSVFGRRPEFLKAATPALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVR 457
Query: 919 EQKKLWENTGKKAGDYIQDKARARFGMKTMPKPSSADRPGPLKASDKSAQRPPTVAATGK 740
EQ+ WE GK+ D + R R MK P +AD L + DK PT ++ +
Sbjct: 458 EQQATWECLGKQINDVLPG-GRTRPTMKN-PINRNADITA-LPSGDK-----PTSSSLLR 509
Query: 739 MKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMDIAAAYGV- 563
MS E R ALPKALQ++F+ V SFQ I QGLR L VS S PK I A+ V
Sbjct: 510 TSMSEEIREALPKALQEVFRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAITASVDVF 569
Query: 562 DAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKLSKADINT 383
DAPQEE++AVIN+ A+NIHG YVL+S + ++ LRK+VI+L GP AKL KA +
Sbjct: 570 DAPQEEIQAVINQVAVNIHGVYVLKSSPDNPQYDTLRKIVIDLFMAEGPSAKLKKASVTE 629
Query: 382 AAGIALGINDITPIELKSAIGDICEYKGRSYSLKSSDGKPK 260
AA + L DIT +E + ++C + ++ L+S DGKP+
Sbjct: 630 AAKLQLN-RDITNVEFLKVMKELCHSEKSAWVLRSGDGKPE 669
>ref|NP_199764.1| SIN-like protein [Arabidopsis thaliana] gi|10177619|dbj|BAB10766.1|
unnamed protein product [Arabidopsis thaliana]
gi|332008443|gb|AED95826.1| SIN-like protein [Arabidopsis
thaliana]
Length = 689
Score = 432 bits (1110), Expect = e-118
Identities = 260/583 (44%), Positives = 347/583 (59%), Gaps = 10/583 (1%)
Frame = -2
Query: 1993 YFNPS--STDKIYVLQYPLRPCWRPYELDERCKEVRVKPTSAEVEVDLEPYMDSRNYDVN 1820
+F PS + ++YVLQYPLRP WRPYE+DERC+EVRV P++++VE+DL + S+NYD N
Sbjct: 125 FFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSMDVHSKNYDSN 184
Query: 1819 SPHAAKMTKQTLSSTWKPPRTTSNAVGVLMGNKLHLNPIHAVVQLRPSMEYLNPDGLKKD 1640
MTKQTL +TWK P T AVGVL G+KLHLNP+HAV QLRPSM+ L+ D KK
Sbjct: 185 --FGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQ 242
Query: 1639 NDVTRDLGAKIKSEASDGEKSAGPSKKQSK-VKGDSNEQNTFDAESWVALKYYDSKSETS 1463
+ T E+S G SKKQ+K V+ S +Q + E+WV+LKY+ +SE
Sbjct: 243 EEST--------------EESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGLQSEYC 288
Query: 1462 AEYLQKMVAQESSPIQFSMSPSDYVNSLCPGASA-NIRSGGLSKRFLLSLPLEERLKKYL 1286
+ YL M+A +S I F+MSP Y+N LC G S+ N S KR LLSLPL+ER++K L
Sbjct: 289 SRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPLKERVQKLL 348
Query: 1285 CKGDVLIHRFTSIKHLGPEISDDDLLRILQTHARLVQGLWVPKSTLLIPENEIERVSRDY 1106
C+G LI R++ +KH PE SD+D L LQ + RLVQGLW PK+ LL + +E +RDY
Sbjct: 349 CEGSPLI-RYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKTRLLKLDGPVE-AARDY 406
Query: 1105 VLFLFSENLKVVPSQFEIPG-KFGQALKKFVNLFGNKIHSSNEWKFKERRDESFIKLHHN 929
VL LFS+N + S+ E G K +++ + F + H +WKFKE D SFIK +
Sbjct: 407 VLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDWKFKEPTDVSFIKSYPE 466
Query: 928 TVLEQKKLWENTGKKAGDYIQ---DKARARFGMKTMPKPSSAD-RPG-PLKASDKSAQRP 764
V EQ W + + I K+RA + SS +P P SDK
Sbjct: 467 IVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVKPEVPTTLSDKGGSSK 526
Query: 763 PTVAATGKMKMSNETRLALPKALQKLFKEQSVYSFQAICQGLRDLAVSSSTHPKTDASMD 584
T+ +M E + ALPKAL+K+F+ V ++ ICQGLRDLAVS+S +PK D+ M
Sbjct: 527 NTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRDLAVSTSNNPKADSGMA 586
Query: 583 IAAAYGVDAPQEELKAVINETAINIHGSYVLRSGAEKTEHTALRKVVIELLCGRGPGAKL 404
+ A VDA Q EL+ VIN A NIHGSYV S + E+ +LR+VVI LL G PG KL
Sbjct: 587 VNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLREVVISLLTGSPPGTKL 646
Query: 403 SKADINTAAGIALGINDITPIELKSAIGDICEYKGRSYSLKSS 275
KA++ AAG +IT E + +ICE + L+ +
Sbjct: 647 MKAEV-FAAGRTKLEREITNNEYIKVMHEICETNSSGWVLQKA 688