BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00001941
         (2830 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   974   0.0  
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              971   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...   937   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   931   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...   911   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   910   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   910   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   904   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...   895   0.0  
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...   890   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   890   0.0  
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps...   887   0.0  
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   887   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   887   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   886   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...   877   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...   876   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...   873   0.0  
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali...   872   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...   872   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  974 bits (2519), Expect(2) = 0.0
 Identities = 483/655 (73%), Positives = 556/655 (84%), Gaps = 9/655 (1%)
 Frame = -1

Query: 2641 FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 2462
            FTKEPYIED GPRK+ SI+F+L SE+EI K AEVQ+W+  YYD ++KPIE+GLLD RMGP
Sbjct: 7    FTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGP 66

Query: 2461 PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 2282
             NKNG CATC G+F  CPGH GYL L LPVYNVGYL+ I +ILKCICKSCSR+LL E   
Sbjct: 67   ANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKAS 126

Query: 2281 KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGII 2117
            KDYL++MR+QK+ A KK ++ K I++ C           CSRCGY+NGIVKKA  +LGII
Sbjct: 127  KDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGII 186

Query: 2116 HDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADR 1937
            HDRSKIAD S+EEC +A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+R
Sbjct: 187  HDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAER 245

Query: 1936 PEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRS 1769
            PEKL++T+I VPP  IRPSV + GGT+SNEND+TERLKRIIQANA +   L     T++ 
Sbjct: 246  PEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKC 305

Query: 1768 QTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGR 1589
               W+YLQIEVAQYINS  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGR
Sbjct: 306  LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365

Query: 1588 TVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDG 1409
            TVISPDPNLKITEV +PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDG
Sbjct: 366  TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425

Query: 1408 SKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1229
            S  SLMF GRKR+ADELK GYIV+RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTLR
Sbjct: 426  SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485

Query: 1228 FNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLT 1049
            FNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545

Query: 1048 SSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNAS 869
            SSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP I KP+ELWTGKQLF+VL+RP+A+
Sbjct: 546  SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHAN 605

Query: 868  LRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            +RVY+NLTV EKT+ K  + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+G
Sbjct: 606  VRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDG 659



 Score =  388 bits (996), Expect(2) = 0.0
 Identities = 189/227 (83%), Positives = 204/227 (89%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQPG  L+ QK+ +I EGY  C E I+ Y+ GKL+L  G
Sbjct: 679  RLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPG 738

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            C+AAQTLE  ITG LN IRETT +VCM ELHWRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 739  CNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 798

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDR+LPHFPR SKTP AKGFVA+SFY+GLTATEFFFHTMGGREGLVDT
Sbjct: 799  QSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDT 858

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDLSIQYD+TVRNANG IVQF YGDDG+D
Sbjct: 859  AVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  971 bits (2509), Expect(2) = 0.0
 Identities = 482/655 (73%), Positives = 555/655 (84%), Gaps = 9/655 (1%)
 Frame = -1

Query: 2641 FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 2462
            FTKEPYIED GPRK+ SI+F+L SE+EI K AEVQ+W+  YYD ++KPIE+GLLD RMGP
Sbjct: 7    FTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGP 66

Query: 2461 PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 2282
             NKNG CATC G+F  CPGH GYL L LPVYNVGYL+ I +ILKCICKSCSR+LL E   
Sbjct: 67   ANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKAS 126

Query: 2281 KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGII 2117
            KDYL++MR+QK+ A KK ++ K I++ C           CSRCGY+NGIVKKA  +LGII
Sbjct: 127  KDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGII 186

Query: 2116 HDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADR 1937
            HDRSKIAD S+EEC +A+SH KE S+ S ++V +L P KVLSLFK+M+DEDC++L LA+R
Sbjct: 187  HDRSKIADGSLEECSSAISHTKE-SKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAER 245

Query: 1936 PEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLD---GTNRS 1769
            PEKL++T+I VPP  IRPSV + GGT+SNEND+TERLKRIIQANA +   L     T++ 
Sbjct: 246  PEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSKC 305

Query: 1768 QTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGR 1589
               W+YLQIEVAQYINS  +GVP  MQA RPLSGFVQRLKGKQGRFR NLS KRVE+TGR
Sbjct: 306  LAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 365

Query: 1588 TVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDG 1409
            TVISPDPNLKITEV +PILMA+ L++PERV+ HNIEKLRQC+ NG  KYPGAK + +PDG
Sbjct: 366  TVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPDG 425

Query: 1408 SKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1229
            S  SLMF GRKR+ADELK GYIV+RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTLR
Sbjct: 426  SMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLR 485

Query: 1228 FNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLT 1049
            FNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 486  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 545

Query: 1048 SSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNAS 869
            SSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP I K +ELWTGKQLF+VL+RP+A+
Sbjct: 546  SSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRPHAN 605

Query: 868  LRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            +RVY+NLTV EKT+ K  + ++TMCP+DGFVYFRNSELISGQLGKATLGNG+K+G
Sbjct: 606  VRVYLNLTVMEKTYNKR-RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDG 659



 Score =  388 bits (996), Expect(2) = 0.0
 Identities = 189/227 (83%), Positives = 204/227 (89%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQPG  L+ QK+ +I EGY  C E I+ Y+ GKL+L  G
Sbjct: 679  RLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPG 738

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            C+AAQTLE  ITG LN IRETT +VCM ELHWRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 739  CNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 798

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDR+LPHFPR SKTP AKGFVA+SFY+GLTATEFFFHTMGGREGLVDT
Sbjct: 799  QSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDT 858

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDLSIQYD+TVRNANG IVQF YGDDG+D
Sbjct: 859  AVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score =  937 bits (2421), Expect(2) = 0.0
 Identities = 473/662 (71%), Positives = 542/662 (81%), Gaps = 16/662 (2%)
 Frame = -1

Query: 2641 FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 2462
            FTK PYIED GPRK+ SI+FS+ S++EI K AEVQ+++A YYD   +PIE GLLD RMGP
Sbjct: 5    FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 2461 PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 2282
             NK+G CATCHG+F  CPGHYGYL L LPVYNVGYL+ I +ILKCICKSCSRI+L E   
Sbjct: 65   ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 2281 KDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKATGMLGIIH 2114
            KDYL+RMR+ KI A KK D+ K I+K C+         C RCGYVNG VKKA  MLGIIH
Sbjct: 125  KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGIIH 184

Query: 2113 DRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKMLDEDCEVLYLADR 1937
            DRSKI D S+EE R+A+SH KE S+ S N+  Y+L P KVLSLFK+M D DCE+LYL+DR
Sbjct: 185  DRSKINDNSLEEFRSAISHTKE-SKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDR 243

Query: 1936 PEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---RSQ 1766
            PEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQANA +R  L  TN   +  
Sbjct: 244  PEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFKCL 303

Query: 1765 TDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRT 1586
              WE LQ+EVAQYINS  +GVP  MQ  +PLSGFVQR+KGK GRFR NLS KRVE+TGRT
Sbjct: 304  GGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGRT 363

Query: 1585 VISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGS 1406
            VISPDPNLKITEV +PI MA+ LT+PERV++HNIEKLRQCVRNG +KYPGA+ + +PDGS
Sbjct: 364  VISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDGS 423

Query: 1405 KVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRF 1226
               L+   RKR ADELK G +VDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRF
Sbjct: 424  ARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRF 483

Query: 1225 NESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTS 1046
            NESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQDFLTS
Sbjct: 484  NESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTS 543

Query: 1045 SFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASL 866
            SFLITRKD FYDRAAFSL+CSYMGDGMD +DLPTP + KPIELWTGKQLFSVL+RP+AS+
Sbjct: 544  SFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHASV 603

Query: 865  RVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELISGQLGKATLGNGDK 710
            RVY+NL V E+ ++K   +         +TMCP+DGFVY RNSELI GQLGKATLGNG+K
Sbjct: 604  RVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGNK 663

Query: 709  NG 704
            +G
Sbjct: 664  DG 665



 Score =  365 bits (937), Expect(2) = 0.0
 Identities = 181/227 (79%), Positives = 198/227 (87%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQPG+ L+ +K   I+  Y KCDE I+ +++GKL+   G
Sbjct: 685  RLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISGDYKKCDEEIQTFNEGKLKPKPG 744

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             DAAQTLE  +T  LN IR+ TG VCM ELHWRNSPLIMSQCGSKGS INISQMIACVGQ
Sbjct: 745  YDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLIMSQCGSKGSAINISQMIACVGQ 804

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAPNGFIDRSLPHF R SKTPAAKGFVANSFYSGLTATEFFFHTM GREGLVDT
Sbjct: 805  QSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFYSGLTATEFFFHTMAGREGLVDT 864

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA+TGYM+RRL+KALEDLSI YD+TVRNA+G IVQF YGDDG+D
Sbjct: 865  AVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQFIYGDDGMD 911


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score =  931 bits (2405), Expect(2) = 0.0
 Identities = 469/674 (69%), Positives = 545/674 (80%), Gaps = 15/674 (2%)
 Frame = -1

Query: 2680 MEQVNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKK 2501
            M Q   +  Q+  FTK+PYIED GPRK+ SI+FS+ S++EI K AEVQ++K  YY  ++ 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 2500 PIESGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCIC 2321
            PIE GLLD RMGP NK+  CATCHG F+ CPGHYGYL L LPVYNVGYL+ I +ILKCIC
Sbjct: 61   PIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCIC 120

Query: 2320 KSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLK--NCSRCGYVNGI 2150
            K CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T   K   C RCGY+NG+
Sbjct: 121  KYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGM 180

Query: 2149 VKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-YMLTPAKVLSLFKKML 1973
            VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y+L P  VL LFK+M 
Sbjct: 181  VKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATYILNPVNVLFLFKRMT 238

Query: 1972 DEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT 1793
            D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDITERLKRIIQ NA ++ 
Sbjct: 239  DTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQ 298

Query: 1792 MLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQN 1622
             L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSGFVQRLKGKQGRFR N
Sbjct: 299  ELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGN 358

Query: 1621 LSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKY 1442
            LS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HNIEKLRQC++NG +KY
Sbjct: 359  LSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKY 418

Query: 1441 PGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSH 1262
            PGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVLFNRQPSLHRMSIM H
Sbjct: 419  PGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCH 478

Query: 1261 RAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGE 1082
            RA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGE
Sbjct: 479  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGE 538

Query: 1081 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQ 902
            ILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLPTP I KP+ELWTGKQ
Sbjct: 539  ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQ 598

Query: 901  LFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCPNDGFVYFRNSELISG 746
            LFSVL+RP+A++RVYVNLTV EKT++    R         +TMCPNDGFVYFRNSELISG
Sbjct: 599  LFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISG 658

Query: 745  QLGKATLGNGDKNG 704
            QLGKATLGNG+K+G
Sbjct: 659  QLGKATLGNGNKDG 672



 Score =  365 bits (937), Expect(2) = 0.0
 Identities = 181/227 (79%), Positives = 196/227 (86%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQP + LS +K   I+E Y  C+  IK Y++GKL+L  G
Sbjct: 692  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 751

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE  IT  LN IRE  G  CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 752  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 811

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAPNGFIDRSLPHFPR +K PAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDT
Sbjct: 812  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 871

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRL+KALEDLSIQYD++VRNA G IVQF YGDDG+D
Sbjct: 872  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 918


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score =  911 bits (2354), Expect(2) = 0.0
 Identities = 465/683 (68%), Positives = 539/683 (78%), Gaps = 30/683 (4%)
 Frame = -1

Query: 2680 MEQVNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKK 2501
            M Q   +  Q+  FTK+PYIED GPRK+ SI+FS+ S++EI K AEVQ++K  YY  ++ 
Sbjct: 1    MTQQLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRV 60

Query: 2500 PIESGLLDSRM---------------GPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYN 2366
            PIE GLLD RM               GP NK+  CATCHG F+ CPGHYGYL L LPVYN
Sbjct: 61   PIEGGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYN 120

Query: 2365 VGYLNIIANILKCICKSCSRILLAEIPRKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPG 2189
            VGYL+ I +ILKCICK CSR+LL E   KDYL++MR  K+ A +KTD+ K I+K C+T  
Sbjct: 121  VGYLSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMA 180

Query: 2188 LK--NCSRCGYVNGIVKKATGMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMV-Y 2018
             K   C RCGY+NG+VKKA  +LGIIHDRSK+ + S++E  +A++H KE S+ +VN+  Y
Sbjct: 181  SKAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKE-SKAAVNVATY 238

Query: 2017 MLTPAKVLSLFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDIT 1838
            +L P  VL LFK+M D DCEVLYL++RPEKLIIT+IAVPP  IRPSV++ G++SNENDIT
Sbjct: 239  ILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDIT 298

Query: 1837 ERLKRIIQANARVRTMLDGTN---RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSG 1667
            ERLKRIIQ NA ++  L   N   +S   WE LQ+EVAQYINS  +GVP  MQ  RPLSG
Sbjct: 299  ERLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSG 358

Query: 1666 FVQRLKGKQGRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHN 1487
            FVQRLKGKQGRFR NLS KRVE+TGRTVISPDPNLKITEV +PI MA+ LT+PERV+ HN
Sbjct: 359  FVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHN 418

Query: 1486 IEKLRQCVRNGSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVL 1307
            IEKLRQC++NG +KYPGA+ + +PDG+   L    R + A ELK G IVDRHLEDGDVVL
Sbjct: 419  IEKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVL 478

Query: 1306 FNRQPSLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALT 1127
            FNRQPSLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL 
Sbjct: 479  FNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALL 538

Query: 1126 LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLP 947
            LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD VDLP
Sbjct: 539  LMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLP 598

Query: 946  TPTIFKPIELWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKRE--------KTMCP 791
            TP I KP+ELWTGKQLFSVL+RP+A++RVYVNLTV EKT++    R         +TMCP
Sbjct: 599  TPAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCP 658

Query: 790  NDGFVYFRNSELISGQLGKATLG 722
            NDGFVYFRNSELISGQLGKATLG
Sbjct: 659  NDGFVYFRNSELISGQLGKATLG 681



 Score =  365 bits (937), Expect(2) = 0.0
 Identities = 181/227 (79%), Positives = 196/227 (86%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQP + LS +K   I+E Y  C+  IK Y++GKL+L  G
Sbjct: 685  RLAKLSARWIGNHGFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPG 744

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE  IT  LN IRE  G  CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 745  CDAAQTLEAVITDILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQ 804

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAPNGFIDRSLPHFPR +K PAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDT
Sbjct: 805  QSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 864

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRL+KALEDLSIQYD++VRNA G IVQF YGDDG+D
Sbjct: 865  AVKTADTGYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 911


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score =  910 bits (2353), Expect(2) = 0.0
 Identities = 456/659 (69%), Positives = 535/659 (81%), Gaps = 8/659 (1%)
 Frame = -1

Query: 2656 QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 2477
            Q +   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 2476 SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 2297
             RMGPPNKNG C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 2296 AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 2132
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 2131 MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 1952
             L I H++    ++ ++E   A+S  K + R SV++   L P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPELDPKVVYSLFKNMSDEDCELL 238

Query: 1951 YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 1775
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 1774 --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1601
              +S   W  LQ+EVAQYINS  +GVP HMQA RPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1600 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1421
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1420 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1241
             PDGS++SLMF  RKR+ADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1240 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1061
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1060 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 881
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF +L+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLR 598

Query: 880  PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            P + +RVYVNLTVTEK+++    + +TMCP+DGFVYFRNSELISGQLGKATLGNG+K+G
Sbjct: 599  PYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDG 654



 Score =  354 bits (908), Expect(2) = 0.0
 Identities = 171/227 (75%), Positives = 193/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +++GKL +  G
Sbjct: 674  RLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPG 733

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE  +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 734  CDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSPINISQMIACVGQ 793

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDRSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFFHTMGGREGLVDT
Sbjct: 794  QSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDT 853

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDL++ YD TVRNA+  IVQF YGDDG+D
Sbjct: 854  AVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMD 900


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score =  910 bits (2353), Expect(2) = 0.0
 Identities = 456/659 (69%), Positives = 535/659 (81%), Gaps = 8/659 (1%)
 Frame = -1

Query: 2656 QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 2477
            Q +   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 2476 SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 2297
             RMGPPNKNG C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 2296 AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 2132
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 2131 MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 1952
             L I H++    ++ ++E   A+S  K + R SV++   L P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPELDPKVVYSLFKNMSDEDCELL 238

Query: 1951 YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 1775
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 1774 --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1601
              +S   W  LQ+EVAQYINS  +GVP HMQA RPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1600 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1421
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1420 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1241
             PDGS++SLMF  RKR+ADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1240 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1061
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1060 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 881
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF +L+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLR 598

Query: 880  PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            P + +RVYVNLTVTEK+++    + +TMCP+DGFVYFRNSELISGQLGKATLGNG+K+G
Sbjct: 599  PYSKMRVYVNLTVTEKSYS---GKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDG 654



 Score =  354 bits (908), Expect(2) = 0.0
 Identities = 171/227 (75%), Positives = 193/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +++GKL +  G
Sbjct: 674  RLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPG 733

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE  +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 734  CDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSPINISQMIACVGQ 793

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDRSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFFHTMGGREGLVDT
Sbjct: 794  QSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDT 853

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDL++ YD TVRNA+  IVQF YGDDG+D
Sbjct: 854  AVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMD 900


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score =  904 bits (2335), Expect(2) = 0.0
 Identities = 452/659 (68%), Positives = 534/659 (81%), Gaps = 8/659 (1%)
 Frame = -1

Query: 2656 QQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLD 2477
            Q++   TK+PYIED GPRK+ SIKFSL SE+EI K AEV+++   YY+ +KKPI++GLLD
Sbjct: 5    QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64

Query: 2476 SRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILL 2297
             RMGPPNK+G C TCHG+F +CPGHYGYL L LPVYNVGYL  + +ILKCICK CS ILL
Sbjct: 65   PRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILL 124

Query: 2296 AEIPRKDYLRRMRTQKIA-QKKTDMQKIIIKTCNTPG----LKNCSRCGYVNGIVKKATG 2132
             +  R+D L++MR  +    KK+++ K ++K CN          CS+CGY+NG+VKK   
Sbjct: 125  DDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKKL-- 182

Query: 2131 MLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVL 1952
             L I H++    ++ ++E   A+S  K + R SV++   + P  V SLFK M DEDCE+L
Sbjct: 183  QLKITHEQG---NRILDEINVAISD-KRELRASVSVPPEIDPKVVYSLFKNMSDEDCELL 238

Query: 1951 YLADRPEKLIITSIAVPPTVIRPSVLV-GGTRSNENDITERLKRIIQANARVRTMLDGTN 1775
            YL+DRPEKL++TSI VPP  IRPSV V GGT+SNENDITERLKRIIQANA +   +  ++
Sbjct: 239  YLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSS 298

Query: 1774 --RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVE 1601
              +S   W  LQ+EVAQYINS  +GVP  MQ PRPLSGF QRLKGKQGRFR NLS KRVE
Sbjct: 299  PVKSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVE 358

Query: 1600 FTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLA 1421
            +TGRTVISPDPNLKITEV +PILMAQ LT+PERV+ HNIEKLRQCVRNG NKYPGAKF+ 
Sbjct: 359  YTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIR 418

Query: 1420 FPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPW 1241
             PDG+++SLMF  RKRYADELK GYIVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPW
Sbjct: 419  HPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 478

Query: 1240 RTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQ 1061
            RTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPK+GEILVASTQ
Sbjct: 479  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQ 538

Query: 1060 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVR 881
            DFLTSSFLITRKDTFY+RA+FSL+CSYMGD MD  DLP+P   KP+ELWTGKQLF VL+R
Sbjct: 539  DFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLR 598

Query: 880  PNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            P + +RVYVNLT+TEK+++    + +TMC +DGFVYFRNSELISGQLGKATLGNG+K+G
Sbjct: 599  PYSKMRVYVNLTLTEKSYS---GKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDG 654



 Score =  354 bits (908), Expect(2) = 0.0
 Identities = 171/227 (75%), Positives = 193/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDV PGE+L  QK  +I+  Y KC++ I  +++GKL +  G
Sbjct: 674  RLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCITQFNEGKLAVQPG 733

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE  +T  LN +R+  G +CM  L WRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 734  CDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSPINISQMIACVGQ 793

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDRSLPHFP  SK PAAKGFVA+SF+ GL+ATEFFFHTMGGREGLVDT
Sbjct: 794  QSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFFHTMGGREGLVDT 853

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDL++ YD TVRNA+  IVQF YGDDG+D
Sbjct: 854  AVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMD 900


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score =  895 bits (2312), Expect(2) = 0.0
 Identities = 450/663 (67%), Positives = 525/663 (79%), Gaps = 10/663 (1%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+WK  YY+ + KP E+GL
Sbjct: 2    ETKMEIEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 2303
            LD+RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVG+ N I +ILKCICK CS +
Sbjct: 62   LDARMGPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNM 121

Query: 2302 LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 2135
            LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 2134 GMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 1961
              +GI   HDRSKI    V+EC++A+SH KE +R    + Y+L P  VL LFK M D+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDC 241

Query: 1960 EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 1781
            E+LY+A RPE LI T + VPP  IRPSV++GGTRSNENDITERLK IIQ NA +  +L  
Sbjct: 242  ELLYIAHRPENLITTCMLVPPLSIRPSVMIGGTRSNENDITERLKLIIQNNACLHRILSQ 301

Query: 1780 TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1610
               S  +   W+ +Q EVA+YINS  +GV  +     PLSG +QRLKGKQGRFR NLS K
Sbjct: 302  PTTSPKNMQVWDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSGK 360

Query: 1609 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1430
            RVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1429 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1250
             + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARI 480

Query: 1249 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1070
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1069 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 890
            STQDFLT+SFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQLFSV
Sbjct: 541  STQDFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSV 600

Query: 889  LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 713
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGKATLGNGN 660

Query: 712  KNG 704
            K+G
Sbjct: 661  KDG 663



 Score =  357 bits (916), Expect(2) = 0.0
 Identities = 173/227 (76%), Positives = 194/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFSIGIDDVQPGE L+ ++ D I  GY +C   I+ ++ G L+L  G
Sbjct: 683  RLAKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG 742

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 743  LDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 802

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SK+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 803  QTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 862

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 863  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score =  890 bits (2300), Expect(2) = 0.0
 Identities = 445/664 (67%), Positives = 530/664 (79%), Gaps = 11/664 (1%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    FTK+PYIED GP K+ SI FS+ S+ EI K AEVQ+W+  YY+ + KP+E GL
Sbjct: 2    ETKMEIEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 2303
            LD RMGPPNK  ICATCH DF  CPGH+GYL L+LPVYNVG+LN I +ILKCICK CS I
Sbjct: 62   LDPRMGPPNKKSICATCHADFQNCPGHFGYLKLDLPVYNVGFLNYILDILKCICKRCSNI 121

Query: 2302 LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCN---TPGLKNCSRCGYVNGIVKKAT 2135
            L+ E   +D+L++MR  K+   KKT++ K ++K C+   +  +  C  CGY+NG+VKK  
Sbjct: 122  LIDEKLYEDHLKKMRNPKMEPLKKTELAKAVVKKCSMMASQRIITCKNCGYLNGMVKKVA 181

Query: 2134 ---GMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVN-MVYMLTPAKVLSLFKKMLDE 1967
               G++GI HDRSKI    V+E ++A+SH +E S G++N + Y+L P  VL LFK M D+
Sbjct: 182  AQMGIIGISHDRSKIHGGEVDEFKSAISHTRE-STGAINPLTYVLDPNLVLGLFKGMSDK 240

Query: 1966 DCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTML 1787
            DCE+LY+A RPE L I  + VPP   RPSV +GGT+SNEND+TER+K+I+Q NA  + +L
Sbjct: 241  DCELLYIAHRPENLFIICMFVPPLPTRPSVRIGGTQSNENDLTERVKKILQDNASCKKIL 300

Query: 1786 DGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLS 1616
            +    S  +   W+ +Q EVAQYINS  +G+P    + +PLSG +QRLKGKQGRFR NLS
Sbjct: 301  NQATTSPKNMQVWDTVQSEVAQYINSEVRGIPNQPDS-KPLSGILQRLKGKQGRFRANLS 359

Query: 1615 AKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPG 1436
             KRVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPG
Sbjct: 360  GKRVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPG 419

Query: 1435 AKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRA 1256
            A+ + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA
Sbjct: 420  ARSVRYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRA 479

Query: 1255 KIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEIL 1076
            +IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEIL
Sbjct: 480  RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEIL 539

Query: 1075 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLF 896
            VASTQDFLTSS+LITRKDTFYDRAAFSL+CSYMGD MD +DLPTPTI KPIELWTGKQ+F
Sbjct: 540  VASTQDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPTPTILKPIELWTGKQVF 599

Query: 895  SVLVRPNASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNG 716
            SVL+RPNAS+RVYV L V EK F K  K ++TMC NDG+VYFRNSELISGQLGKATLGNG
Sbjct: 600  SVLLRPNASVRVYVTLNVKEKNFKKG-KYDETMCTNDGWVYFRNSELISGQLGKATLGNG 658

Query: 715  DKNG 704
            +K+G
Sbjct: 659  NKDG 662



 Score =  351 bits (900), Expect(2) = 0.0
 Identities = 171/227 (75%), Positives = 193/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFS+GIDDVQPGE L  ++   IN+GY  C   I+ +++G+L+L  G
Sbjct: 682  RLAKLSARWIGIHGFSLGIDDVQPGEELREEREKIINKGYEDCGLKIRDFNEGRLQLKAG 741

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A++LE  ITG LN IRE TG +CM  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 742  LDTAKSLESDITGILNRIREATGKLCMEGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 801

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SKTP AKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 802  QTVNGHRAPDGFIDRSLPHFPRMSKTPEAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 861

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 862  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 908


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score =  890 bits (2300), Expect(2) = 0.0
 Identities = 454/659 (68%), Positives = 523/659 (79%), Gaps = 12/659 (1%)
 Frame = -1

Query: 2644 LFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMG 2465
            +FTK+PYIED GPRK+ S++F+  S AEI K AEVQ++K  YYD ++KPI+ GLLD RMG
Sbjct: 10   VFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMG 69

Query: 2464 PPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIP 2285
            P NK   CATCH +F  CPGHYGY+ L LPV+NVGY   I  ILKCICKSCSRILL E  
Sbjct: 70   PANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKL 129

Query: 2284 RKDYLRRMRTQKI-AQKKTDMQKIIIKTCNTPGLKN----CSRCGYVNGIVKKATGMLGI 2120
             KD+LR+MR  K+ A +K D+ K IIK C+T    N    CSRCGY+NG VKKA  MLGI
Sbjct: 130  FKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGI 189

Query: 2119 IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKMLDEDCEVLYLA 1943
            +H R++  D  V         + E  R   N+   +L P +VL LF++M DEDCE+L+L+
Sbjct: 190  LHYRARSKDAGV---------VSEDLRAPYNVSNDILNPFRVLCLFQRMSDEDCELLFLS 240

Query: 1942 DRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN---R 1772
            +RPEKLIIT++ VPP  IRPSV++ G++SNENDITERLKRIIQ NA V   L  +N   +
Sbjct: 241  NRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 1771 SQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTG 1592
                W+ LQ EVAQ INS  +G+P  MQ  +PL+GFVQRLKGKQGRFR NL  KRVEFTG
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 1591 RTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPD 1412
            RTVISPDPNLKITEV VPI MA+ LT+PERVT HNIEKLRQCV NG +KYPGA+ L   D
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 1411 GSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1232
            GS  SLM  GRKR ADELK G IV+RHLEDGDVVLFNRQPSLHRMSIM HR ++MPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 1231 RFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFL 1052
            RFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 1051 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNA 872
            TSSFLITRKDTFYDRAAFSLMCSYMGDGMD VDLPTP + KPIELWTGKQLFSVLVRP+A
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 871  SLRVYVNLTVTEKTFTK---SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            S++VY+NLTV EK+++K   + K  +TMCPNDGFVYFRNSELISGQ+GKATLGNG+K+G
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDG 659



 Score =  361 bits (927), Expect(2) = 0.0
 Identities = 179/227 (78%), Positives = 194/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQPG+ L  +K   I EGY  CD+ I  ++ G L    G
Sbjct: 679  RLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRDCDKQINLFNTGNLPPEAG 738

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQ+LE +IT  LN IRE T +VCM  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 739  CDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 798

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAP+GFIDRSLPHF R +KTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 799  QSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 858

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRL+KALEDLSI YD +VRNA G IVQF YGDDG+D
Sbjct: 859  AVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYGDDGMD 905


>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
            gi|482548169|gb|EOA12363.1| hypothetical protein
            CARUB_v10025743mg [Capsella rubella]
          Length = 1376

 Score =  887 bits (2293), Expect(2) = 0.0
 Identities = 444/663 (66%), Positives = 526/663 (79%), Gaps = 10/663 (1%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    +TK+PYIED G  K+ SI FS+ S+ E+ K AEVQ+WK +YYD + KP E GL
Sbjct: 2    ETKMEIEYTKKPYIEDVGSLKIKSINFSMLSDLEVMKAAEVQVWKNSYYDPNCKPFEGGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 2303
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYN+GY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNIGYFNFILDILKCICKCCSNM 121

Query: 2302 LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 2135
            LL E   +D+LR+MR  K+   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIP 181

Query: 2134 GMLGI--IHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 1961
              +GI   HDRSKI    V+E +AA+SHIKE ++    + Y+L P  VL LFK M D+DC
Sbjct: 182  AQMGIGISHDRSKIHGGEVDEFKAAISHIKESTQAINPLTYVLDPNVVLGLFKGMSDKDC 241

Query: 1960 EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 1781
            E+LY+A RPE LIIT + VPP  IRPSV+VGG++SNEND++ RLK+IIQ NA +  +L  
Sbjct: 242  ELLYIAHRPENLIITCMLVPPLSIRPSVMVGGSQSNENDLSARLKQIIQDNASLHRILSQ 301

Query: 1780 TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1610
               S  +   W+ +Q EVA+YINS  +GV     + +P+SG +QRLKGKQGRFR NLS K
Sbjct: 302  PTTSAKNMQVWDTVQSEVAKYINSEVRGVQNQPDS-KPMSGILQRLKGKQGRFRANLSGK 360

Query: 1609 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1430
            RVE+TGRTVISPDPNLKITEVG+PILMA+ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1429 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1250
             + +PDGS  +L+   RKR ADEL IG IVDRHLE+GD VLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRALVGDYRKRIADELAIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARI 480

Query: 1249 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1070
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1069 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 890
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPT+ KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTVLKPIELWTGKQIFSV 600

Query: 889  LVRPNASLRVYVNLTVTEKTFTK-SWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGD 713
            L+RPNAS+RVYV L V EK F K +   ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASVRVYVTLNVKEKNFKKGNHGFDETMCTNDGWVYFRNSELISGQLGKATLGNGN 660

Query: 712  KNG 704
            K+G
Sbjct: 661  KDG 663



 Score =  359 bits (922), Expect(2) = 0.0
 Identities = 176/227 (77%), Positives = 192/227 (84%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFSIGIDDVQPGE LS Q+ D I  GY  C   I+ ++ G L+L  G
Sbjct: 683  RLAKLSARWIGIHGFSIGIDDVQPGEELSRQRKDAIQSGYDDCHSIIENFNRGNLQLKAG 742

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A+TLE  ITG LNTIRE TG  CM  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 743  LDGAKTLEAGITGILNTIREDTGKACMDGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 802

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SK+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 803  QTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 862

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 863  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909


>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  887 bits (2292), Expect(2) = 0.0
 Identities = 444/663 (66%), Positives = 521/663 (78%), Gaps = 10/663 (1%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 2303
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121

Query: 2302 LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 2135
            LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 2134 GM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 1961
                +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK+M D+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 1960 EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 1781
            E+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA +  +L  
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 301

Query: 1780 TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1610
               S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRFR NLS K
Sbjct: 302  PTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGK 360

Query: 1609 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1430
            RVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1429 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1250
             + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARI 480

Query: 1249 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1070
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1069 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 890
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSV 600

Query: 889  LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 713
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGN 660

Query: 712  KNG 704
            K+G
Sbjct: 661  KDG 663



 Score =  358 bits (919), Expect(2) = 0.0
 Identities = 174/227 (76%), Positives = 194/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFSIGIDDVQPGE LS ++ D I  GY +C   I+ ++ G L+L  G
Sbjct: 683  RLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG 742

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 743  LDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 802

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SK+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 803  QTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 862

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 863  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score =  887 bits (2292), Expect(2) = 0.0
 Identities = 444/663 (66%), Positives = 521/663 (78%), Gaps = 10/663 (1%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRI 2303
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK CS +
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM 121

Query: 2302 LLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKAT 2135
            LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CGY+NG+VKK  
Sbjct: 122  LLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIA 181

Query: 2134 GM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDC 1961
                +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL LFK+M D+DC
Sbjct: 182  AQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDC 241

Query: 1960 EVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDG 1781
            E+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  NA +  +L  
Sbjct: 242  ELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQ 301

Query: 1780 TNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAK 1610
               S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK GRFR NLS K
Sbjct: 302  PTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGK 360

Query: 1609 RVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAK 1430
            RVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVRNG NKYPGA+
Sbjct: 361  RVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGAR 420

Query: 1429 FLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1250
             + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHRMSIM HRA+I
Sbjct: 421  NVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARI 480

Query: 1249 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVA 1070
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVA 540

Query: 1069 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSV 890
            STQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIELWTGKQ+FSV
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSV 600

Query: 889  LVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQLGKATLGNGD 713
            L+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQLGKATLGNG+
Sbjct: 601  LLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGN 660

Query: 712  KNG 704
            K+G
Sbjct: 661  KDG 663



 Score =  358 bits (919), Expect(2) = 0.0
 Identities = 174/227 (76%), Positives = 194/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFSIGIDDVQPGE LS ++ D I  GY +C   I+ ++ G L+L  G
Sbjct: 683  RLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG 742

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 743  LDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 802

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SK+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 803  QTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 862

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 863  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score =  886 bits (2289), Expect(2) = 0.0
 Identities = 447/662 (67%), Positives = 524/662 (79%), Gaps = 12/662 (1%)
 Frame = -1

Query: 2653 QTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDS 2474
            Q  ++TK+PYIED GPR++ SI+FS  S ++I K +E Q+    YYD +KK I  GLLD+
Sbjct: 6    QDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGLLDT 65

Query: 2473 RMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLA 2294
            RMG PNK+G C TC G FT CPGH+GYL L LPVYNVGYL+ I +ILKCICKSCSR+L+ 
Sbjct: 66   RMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRVLVD 125

Query: 2293 EIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCGYVNGIVKKATGML 2126
            E  RK YL+RMR  +    KK ++ K I+K C++        C RCGY+NG+VKKA  ++
Sbjct: 126  EKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAGSVV 185

Query: 2125 GIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYL 1946
            GIIHDRSK+ D  +EEC++A+ H +E         Y+L P +VLSLF++M++EDCE+LYL
Sbjct: 186  GIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCELLYL 245

Query: 1945 ADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRT-MLDGTN-- 1775
              RPEKLIIT+IAVPP  IRPSV   G++SNENDITERLK+IIQ NA++R  +L+G    
Sbjct: 246  QGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTG 305

Query: 1774 -RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEF 1598
             +    W+ LQ  V  YINS  + +P  MQ  RPLSGFVQRL GKQGRFRQNL+ KRVEF
Sbjct: 306  IKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEF 364

Query: 1597 TGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAF 1418
            TGRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQCV NGS KYPGA+ + +
Sbjct: 365  TGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTY 424

Query: 1417 PDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWR 1238
            PDGS   L    RKR A+ELK G IV RHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWR
Sbjct: 425  PDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWR 484

Query: 1237 TLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQD 1058
            TLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA  LMGVQNNLCTPKNGEILVASTQD
Sbjct: 485  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQD 544

Query: 1057 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRP 878
            FLTSSFLITRKDTFYDRAAFSLMCSYM DGMD VDLPTP++ KPIELWTGKQLFSVL+RP
Sbjct: 545  FLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSVLLRP 604

Query: 877  NASLRVYVNLTVTEKTFTKSWKREK----TMCPNDGFVYFRNSELISGQLGKATLGNGDK 710
            +A++RVYVNL + EK +++  K  K    TMCPNDG+VYFRNSELISGQLGKATLGNG+K
Sbjct: 605  HANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLGNGNK 664

Query: 709  NG 704
            +G
Sbjct: 665  DG 666



 Score =  372 bits (955), Expect(2) = 0.0
 Identities = 181/227 (79%), Positives = 196/227 (86%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQPG+ L  +K   I+ GY  C++ I  Y+ G+L L  G
Sbjct: 686  RLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKTISNGYRHCNKLIADYNGGRLALKSG 745

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDA QTLE  IT +LN +RE  GDVCM ELHWRNSPLIMSQCGSKGSPINISQMIACVGQ
Sbjct: 746  CDATQTLETEITERLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 805

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGG RAP+GFIDRSLPHFPR SKTPAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDT
Sbjct: 806  QSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 865

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYMARRL K LEDL +QYD+TV++A GGIVQF YGDDGLD
Sbjct: 866  AVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFLYGDDGLD 912


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score =  877 bits (2265), Expect(2) = 0.0
 Identities = 442/661 (66%), Positives = 516/661 (78%), Gaps = 5/661 (0%)
 Frame = -1

Query: 2671 VNPETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIE 2492
            +N    +  +FTKEP+IED GPRK+  I +S  SEAEI K  EVQ+WK  YYD  +KP  
Sbjct: 1    MNRSRTEGLVFTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEA 60

Query: 2491 SGLLDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSC 2312
             GLLDSRMGP NK+ +CATCHG+F  C GHYGYLPL  PV+NVGYLN +  ILKCICK C
Sbjct: 61   DGLLDSRMGPANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGC 120

Query: 2311 SRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKNCSRCGYVNGIVKKAT 2135
            + ILL E  RK YL++MR  K+ + +K  + + I+K   +     C RCGY+NGIVK   
Sbjct: 121  AGILLDEDTRKKYLKKMRNSKLDELQKIQLLESIMKRFRSAKFIKCQRCGYINGIVKLTR 180

Query: 2134 GMLGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEV 1955
              L I+HD S   +  V E ++A+SH+KE    +      L P  V SLF KM DEDC +
Sbjct: 181  STLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCAL 240

Query: 1954 LYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTN 1775
            LYLA+RPEKLIIT+IAVPP VIRPSV++ G++SNENDITE+L++IIQANA +   L+ + 
Sbjct: 241  LYLAERPEKLIITNIAVPPIVIRPSVIMDGSQSNENDITEKLRKIIQANAALHKELEEST 300

Query: 1774 RSQTDWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFT 1595
            + Q  +E LQ  VAQYINS  KG P  MQA +PL+GFVQR+KGKQGRFR NLS KRVE+T
Sbjct: 301  KFQGGFEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYT 360

Query: 1594 GRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFP 1415
            GRTVISPDPNLKITEV +PI MA+ LT+PERVT HNIEKLRQC+RNG +KYPGAK L   
Sbjct: 361  GRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHA 420

Query: 1414 DGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRT 1235
             G+  +L    RKR ADEL+ G IVDRHLEDGDVVLFNRQPSLHRMS+M HRA+IMPWRT
Sbjct: 421  GGTTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRT 480

Query: 1234 LRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDF 1055
            LRFNESVCNPYNADFDGDEMN+HVPQTE+ARTEAL LM VQNNLCTPKNGEILVASTQDF
Sbjct: 481  LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDF 540

Query: 1054 LTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPN 875
            LTSSFLITRKDTFYDR+ FSL+CSYMGDGMD +DLPTP I KP+ELW+GKQLFS+L+RP+
Sbjct: 541  LTSSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPH 600

Query: 874  ASLRVYVNLTVTEKTFTKSW---KRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKN 707
            A++RVYVNLTV EKT        KRE KTMCPNDGFVYFRNSELISGQLGK TLGNG+K+
Sbjct: 601  ANVRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKD 660

Query: 706  G 704
            G
Sbjct: 661  G 661



 Score =  360 bits (923), Expect(2) = 0.0
 Identities = 174/227 (76%), Positives = 196/227 (86%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAK SARWIGNHGFSIGIDDVQP E L  +K + I  GYS+CD FI+A++ GKLEL  G
Sbjct: 681  RLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSECDGFIEAFNKGKLELAPG 740

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE +I  +LN++R+TT  VCM  LHWRNSPLIMSQCGSKGSPINI QM+ACVGQ
Sbjct: 741  CDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQCGSKGSPINICQMVACVGQ 800

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGG RA NGF+DRSLPHF + +KTPA KGFVANSF++GL+ATEFFFHTMGGREGLVDT
Sbjct: 801  QSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLSATEFFFHTMGGREGLVDT 860

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDL + YD TVR+ NGGIVQF YGDDG+D
Sbjct: 861  AVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYGDDGMD 907


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score =  876 bits (2264), Expect(2) = 0.0
 Identities = 442/654 (67%), Positives = 526/654 (80%), Gaps = 8/654 (1%)
 Frame = -1

Query: 2641 FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 2462
            FTKEP++EDAGPRK+ ++KFS+ S++EI K  EVQ+WK +YYD  KKPI  GLLD RMGP
Sbjct: 11   FTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 2461 PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 2282
             NK+  CATCHG+F  CPGHYGYL L LPV+NVGYL  I  ILKCICK C+RILL E  R
Sbjct: 71   ANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDEDTR 130

Query: 2281 KDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGIVKKATGMLGIIHDR 2108
            K +L++MR+ K ++  K D  K+ IIK C+   + NC RCGY+NG VKK    L I+HD 
Sbjct: 131  KKHLKKMRSSKKSELDKMDFVKVRIIKDCSK--VVNCPRCGYINGSVKKLPASLIIMHDC 188

Query: 2107 SKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYLADRPEK 1928
            SK  +  VEE  + +S IK+    +     +L P +VLSLF+KMLDEDCE+LY+A+RPEK
Sbjct: 189  SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248

Query: 1927 LIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---DW 1757
            LIIT+I VPP  IRPSV++  + SNENDITERLK IIQANA +R  L  ++ S      W
Sbjct: 249  LIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGW 308

Query: 1756 EYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVIS 1577
            E LQ EVAQ+INS  +G+P +MQ+ + L+GFVQRLKGK GRFR NLS KRVE+TGRTVIS
Sbjct: 309  EILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVIS 368

Query: 1576 PDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGSKVS 1397
            PDPNLKI+EV +PILMA  LT+PERVT HNIEKLRQCVRNG +KYPGA+ L    G   S
Sbjct: 369  PDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWS 428

Query: 1396 LMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNES 1217
            L    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNES
Sbjct: 429  LKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNES 488

Query: 1216 VCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSFL 1037
            VCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGVQNNLCTPKNGEILVASTQDFLTSSFL
Sbjct: 489  VCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFL 548

Query: 1036 ITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRVY 857
            +TRKDTFYDR+AF+ +C+++GDG+D +DLPTP I KP+ELW+GKQLFS+L+RP+A+ +VY
Sbjct: 549  VTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVY 608

Query: 856  VNLTVTEKTFTK--SWKRE-KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            VNLTV EKT+TK    KRE KT+CPNDGFVYFRN+ELISGQ+GK TLGNG+K+G
Sbjct: 609  VNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDG 662



 Score =  375 bits (963), Expect(2) = 0.0
 Identities = 180/227 (79%), Positives = 200/227 (88%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQP E L  +K + ++EGY KCD  I+A++ GKLELL G
Sbjct: 682  RLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNHIQAFNKGKLELLAG 741

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDA QTLE +ITG LN +R+  G VCM  LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 742  CDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 801

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAPNGF+DRSLPHFP N+KTPAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDT
Sbjct: 802  QSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 861

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+R+LMK++EDL + YD TVRNA G IVQF YGDDG+D
Sbjct: 862  AVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDGMD 908


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score =  873 bits (2255), Expect(2) = 0.0
 Identities = 437/658 (66%), Positives = 524/658 (79%), Gaps = 9/658 (1%)
 Frame = -1

Query: 2650 TTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSR 2471
            T  FTK PY+ED GPR++ SI+FS  S AE+ K  EV++ K AYYD+++KPI++GLLD R
Sbjct: 6    TIQFTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQR 65

Query: 2470 MGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAE 2291
            MGP NK+ +C TC G F  CPGHYGYLPL LPVYNVG+   I +ILKCICK+CSR+LLA+
Sbjct: 66   MGPANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLAD 125

Query: 2290 IPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNT-PGLKN---CSRCGYVNGIVKKATGML 2126
               + +L++MR  K    KK ++QK ++K CN+  G K    CSRCGY+NG+VKKA   L
Sbjct: 126  KDHQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPL 185

Query: 2125 GIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLSLFKKMLDEDCEVLYL 1946
             I HDR+K+ D  ++E R+A++H K+  +G+  ++  + P     L + MLDEDCE+LYL
Sbjct: 186  KIQHDRAKVVDNCLDERRSALAHTKD-IKGNPVVISTIDPKTAYHLLENMLDEDCELLYL 244

Query: 1945 ADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARV-RTMLDGTNRS 1769
             DRPEKLI+T+I VPP  IRPSV      SNENDIT RLK+IIQ NA V + M D +++S
Sbjct: 245  HDRPEKLIVTNILVPPIAIRPSVFSTRAMSNENDITSRLKQIIQINAAVLQEMSDQSSQS 304

Query: 1768 QT---DWEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEF 1598
            Q+   +W+ LQ+EVAQYINS  +    + +  +PLSGFVQRLKGKQGRFR NLS KRVEF
Sbjct: 305  QSLTNNWDSLQVEVAQYINSDVRVPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEF 364

Query: 1597 TGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAF 1418
            TGRTVISPDPNLKI EV VPILMAQ L++PERV+ HNIE+LRQCVRNG  KYPGAKF+  
Sbjct: 365  TGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKH 424

Query: 1417 PDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWR 1238
            PDG+++SL    R R AD+LK GYIV RHL+DGD++LFNRQPSLHRMSIMSHRA+IMPWR
Sbjct: 425  PDGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWR 484

Query: 1237 TLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQD 1058
            TLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEAL LMGVQNNLCTPKNGEILVASTQD
Sbjct: 485  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 544

Query: 1057 FLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRP 878
            FLTSS+LITRKDTFYDRA+FSL+CSYMGD MD +DLPTP + KP+ELWTGKQLFS+L+RP
Sbjct: 545  FLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRP 604

Query: 877  NASLRVYVNLTVTEKTFTKSWKREKTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            +A +RVYVNLTV EK + KS    +TMCP DGFVY RNSELISGQLGKATLGNG K+G
Sbjct: 605  HAKMRVYVNLTVAEKNYGKS---GETMCPKDGFVYIRNSELISGQLGKATLGNGSKDG 659



 Score =  317 bits (813), Expect(2) = 0.0
 Identities = 158/227 (69%), Positives = 180/227 (79%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGI+DVQPG  L+ +K   I++GY +C ++I +Y  G L+LL G
Sbjct: 679  RLAKLSARWIGNHGFSIGINDVQPGIVLNKEKKVTIDKGYGQCIDYIGSYKSGSLDLLPG 738

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            C+ A+TLE  ITG LN IRE T +VCM  LHWRNSPLIMSQC             ACVGQ
Sbjct: 739  CNNAETLEANITGTLNNIRERTANVCMNNLHWRNSPLIMSQCDG-----------ACVGQ 787

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRRAPNGF+DR+LPHF R +K P AKGFV NSFY+GL+ATEFFFHTMGGREGLVDT
Sbjct: 788  QSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFFHTMGGREGLVDT 847

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+RRLMKALEDLS+ YD TVRNA+  IVQF YG D +D
Sbjct: 848  AVKTADTGYMSRRLMKALEDLSVHYDGTVRNASVCIVQFVYGGDAMD 894


>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1391

 Score =  872 bits (2253), Expect(2) = 0.0
 Identities = 444/680 (65%), Positives = 521/680 (76%), Gaps = 27/680 (3%)
 Frame = -1

Query: 2662 ETQQTTLFTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGL 2483
            ET+    FTK+PYIED GP K+ SI FS+ S+ E+ K AEVQ+W    YD S KP E+GL
Sbjct: 2    ETKMEIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGL 61

Query: 2482 LDSRMGPPNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICK----- 2318
            LD RMGPPNK  IC TC G+F  CPGHYGYL L+LPVYNVGY N I +ILKCICK     
Sbjct: 62   LDPRMGPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELA 121

Query: 2317 -----SCSRILLAEIPRKDYLRRMRTQKIAQ-KKTDMQKIIIKTCNTPGLKN---CSRCG 2165
                  CS +LL E   +D+LR+MR  ++   KKT++ K ++K C+T   +    C +CG
Sbjct: 122  DYVSLRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCG 181

Query: 2164 YVNGIVKKATGM--LGIIHDRSKIADKSVEECRAAVSHIKEQSRGSVNMVYMLTPAKVLS 1991
            Y+NG+VKK      +GI HDRSKI    ++EC++A+SH K+ +     + Y+L P  VL 
Sbjct: 182  YLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLG 241

Query: 1990 LFKKMLDEDCEVLYLADRPEKLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQA 1811
            LFK+M D+DCE+LY+A RPE LIIT + VPP  IRPSV++GG +SNEND+T RLK+II  
Sbjct: 242  LFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILG 301

Query: 1810 NARVRTMLDGTNRSQTD---WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQ 1640
            NA +  +L     S  +   W+ +QIEVA+YINS  +G   +     PLSG +QRLKGK 
Sbjct: 302  NASLHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKG 360

Query: 1639 GRFRQNLSAKRVEFTGRTVISPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVR 1460
            GRFR NLS KRVEFTGRTVISPDPNLKITEVG+PILMAQ LTFPE V+ HNIEKLRQCVR
Sbjct: 361  GRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVR 420

Query: 1459 NGSNKYPGAKFLAFPDGSKVSLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHR 1280
            NG NKYPGA+ + +PDGS  +L+   RKR ADEL IG IVDRHL++GDVVLFNRQPSLHR
Sbjct: 421  NGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHR 480

Query: 1279 MSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLC 1100
            MSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTE+ARTEA+TLMGVQNNLC
Sbjct: 481  MSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLC 540

Query: 1099 TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIE 920
            TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGDGMD +DLPTPTI KPIE
Sbjct: 541  TPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIE 600

Query: 919  LWTGKQLFSVLVRPNASLRVYVNLTVTEKTFTKSWKR-EKTMCPNDGFVYFRNSELISGQ 743
            LWTGKQ+FSVL+RPNAS+RVYV L V EK F K     ++TMC NDG+VYFRNSELISGQ
Sbjct: 601  LWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQ 660

Query: 742  LGKAT-------LGNGDKNG 704
            LGKAT       LGNG+K+G
Sbjct: 661  LGKATLALDIFPLGNGNKDG 680



 Score =  358 bits (919), Expect(2) = 0.0
 Identities = 174/227 (76%), Positives = 194/227 (85%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIG HGFSIGIDDVQPGE LS ++ D I  GY +C   I+ ++ G L+L  G
Sbjct: 700  RLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG 759

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
             D A++LE  ITG LNTIRE TG  CM+ LHWRNSPLIMSQCGSKGSPINISQM+ACVGQ
Sbjct: 760  LDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQ 819

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            Q+V G RAP+GFIDRSLPHFPR SK+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT
Sbjct: 820  QTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 879

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTA TGYM+RRLMKALEDL + YD+TVRNA+G I+QF YGDDG+D
Sbjct: 880  AVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 926


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score =  872 bits (2252), Expect(2) = 0.0
 Identities = 440/658 (66%), Positives = 527/658 (80%), Gaps = 12/658 (1%)
 Frame = -1

Query: 2641 FTKEPYIEDAGPRKVGSIKFSLSSEAEICKGAEVQIWKAAYYDQSKKPIESGLLDSRMGP 2462
            FTKEP++ED GPRK+ ++KFS  SE+EI K AEVQ+WK +YYD  KKPI  GLLD RMGP
Sbjct: 11   FTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDPRMGP 70

Query: 2461 PNKNGICATCHGDFTKCPGHYGYLPLNLPVYNVGYLNIIANILKCICKSCSRILLAEIPR 2282
             NK+ +CATC G+F  CPGHYGYL L LPV+NVGYL+ I  ILKCICK C+RILL E  R
Sbjct: 71   ANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARILLDEDTR 130

Query: 2281 KDYLRRMRTQKIAQ-KKTDMQKI-IIKTCNTPGLKNCSRCGYVNGIVKKATGMLGIIHDR 2108
            K +L++MR+ K ++  K D  K+ +IK C+   + NC RCGY+NG VKK    L IIHD 
Sbjct: 131  KKHLKKMRSSKKSELDKIDFVKVRVIKDCSK--VVNCPRCGYINGSVKKLPASLTIIHDC 188

Query: 2107 SKIADKSVEECRAAVSHIKEQSRGSVNMVY-MLTPAKVLSLFKKMLDEDCEVLYLADRPE 1931
            SK  +  VEE  +A+S +K+ SR + N+   +L P +VLSLFK+MLDEDCE+LY+A+RPE
Sbjct: 189  SKCRNYIVEELDSALSRMKD-SRATTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPE 247

Query: 1930 KLIITSIAVPPTVIRPSVLVGGTRSNENDITERLKRIIQANARVRTMLDGTNRSQT---D 1760
            KLI+T++ VPP  IRPSV++  + SNENDITERLK IIQANA +R  L  +  S      
Sbjct: 248  KLIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESTFSSKFLDG 307

Query: 1759 WEYLQIEVAQYINSAEKGVPAHMQAPRPLSGFVQRLKGKQGRFRQNLSAKRVEFTGRTVI 1580
            W+ LQ EVAQ+INS  +G+P +MQ  + L+GFVQRLKGK GRFR NLS KRVE+TGRTVI
Sbjct: 308  WDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVI 367

Query: 1579 SPDPNLKITEVGVPILMAQTLTFPERVTSHNIEKLRQCVRNGSNKYPGAKFLAFPDGSKV 1400
            SPDPNLKI+EV +PI MA+ LT+PERVT HNIEKLRQCVRNG +KYPGA+ L    G   
Sbjct: 368  SPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSW 427

Query: 1399 SLMFPGRKRYADELKIGYIVDRHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1220
            SL    RKR ADEL+IG IVDRHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLRFNE
Sbjct: 428  SLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 487

Query: 1219 SVCNPYNADFDGDEMNMHVPQTEDARTEALTLMGVQNNLCTPKNGEILVASTQDFLTSSF 1040
            SVCNPYNADFDGDEMN+HVPQTE+ARTEA+ LMGV+NNLCTPKNGEILVASTQDFLTSSF
Sbjct: 488  SVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVASTQDFLTSSF 547

Query: 1039 LITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPTIFKPIELWTGKQLFSVLVRPNASLRV 860
            LITRKDTFYDR+ FSL+CSY+GDGMD +DLPTP I KP+ELW+GKQLFS+++RP+A++RV
Sbjct: 548  LITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSIILRPHANMRV 607

Query: 859  YVNLTVTEKTFTKSWKRE------KTMCPNDGFVYFRNSELISGQLGKATLGNGDKNG 704
            YVNLTV E+ +T+  K +      KT+CPNDGFVYFRNSELISGQ+GK TLGNG+K+G
Sbjct: 608  YVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTLGNGNKDG 665



 Score =  379 bits (972), Expect(2) = 0.0
 Identities = 184/227 (81%), Positives = 201/227 (88%)
 Frame = -3

Query: 683  RLAKLSARWIGNHGFSIGIDDVQPGESLSCQKTDKINEGYSKCDEFIKAYSDGKLELLGG 504
            RLAKLSARWIGNHGFSIGIDDVQP E L  +K + I+EGY +CD+ I+A++ GKLELL G
Sbjct: 685  RLAKLSARWIGNHGFSIGIDDVQPKEILINKKDETISEGYRECDKHIEAFNKGKLELLAG 744

Query: 503  CDAAQTLEVRITGQLNTIRETTGDVCMAELHWRNSPLIMSQCGSKGSPINISQMIACVGQ 324
            CDAAQTLE RITG LN +R+T G VCM  LHWRNSPLIMSQCGSKGS INISQM+ACVGQ
Sbjct: 745  CDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRNSPLIMSQCGSKGSSINISQMVACVGQ 804

Query: 323  QSVGGRRAPNGFIDRSLPHFPRNSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDT 144
            QSVGGRR PNGFIDRSLPHFPR SKTPAAKGFVANSFYSGL+ATEFFFHTMGGREGLVDT
Sbjct: 805  QSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDT 864

Query: 143  AVKTADTGYMARRLMKALEDLSIQYDDTVRNANGGIVQFRYGDDGLD 3
            AVKTADTGYM+R+LMK+LEDL + YD TVRNA G IVQF YGDDG+D
Sbjct: 865  AVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGGSIVQFCYGDDGMD 911