BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia24_contig00000063
         (7059 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...  3430   0.0  
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]       1182   0.0  
ref|YP_227370.1| helicase [Strawberry latent ringspot virus]          952   0.0  
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v...   803   0.0  
ref|YP_227372.1| protease [Strawberry latent ringspot virus]          482   e-133
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]...   341   3e-90
gb|AAZ76594.1| polyprotein [Stocky prune virus]                       333   9e-88
gb|AHN52254.1| polyprotein, partial [Currant latent virus]            308   2e-80
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]                   307   5e-80
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe...   305   2e-79
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270...   301   2e-78
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523...   301   4e-78
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ...   291   2e-75
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]         288   3e-74
dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus]                257   6e-65
ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt v...   254   3e-64
gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]     254   3e-64
ref|NP_945134.1| polyprotein [Broad bean wilt virus 1] gi|755550...   254   3e-64
gb|ADZ55760.1| polyprotein [Radish mosaic virus]                      254   3e-64
gb|ACE06773.1| polyprotein [Radish mosaic virus]                      254   3e-64

>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 2227

 Score = 3430 bits (8893), Expect = 0.0
 Identities = 1689/2260 (74%), Positives = 1891/2260 (83%), Gaps = 8/2260 (0%)
 Frame = -3

Query: 6898 MGYSRGARGGADKPKLCGVCFASFPDAQERKAHYKKYNCRDSFGNLGGLVETGRCLKAKS 6719
            MGYSRG+RGGADKPKLCG+CFASFPDAQERK HY+KYNCRDS G LGGLV TGRC  AK 
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 6718 ANIEIMRGFEEFRQ---DDGTYEEIEVEYMSDLVSFSSMIPFAGIRFGTVNQTTPQVGSS 6548
             N+++    +E      D  T +++E+ +MSDL  F+       I     +  T   G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 6547 YPEK-IYRAPGYNIEEYTVLQAPRAGA--RDFLAPDRVHDAEILVRNARYMEVSRGFGSS 6377
            Y  + IY+APG ++ +Y   Q  +     R+FL  DR +DAE+L    R   V  GFGS 
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 6376 PQDRTGLGGEDFKYRFDNDKLFSDLDKGLTRFVSAGFTTSGFPVLKVVPDLTLQDLAEMT 6197
              D TGLGG+  KYRFD+D L+SD  KGL RFVSAGFT S    L +   LTLQD+ EMT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLDL--KLTLQDVDEMT 238

Query: 6196 QALSDDWIEWCXXXXXXXXXXXXXXXXXXXYVEETLSPATLVMAEV-ALEPSLQDSVVGE 6020
            QALSD+W EW                     +EE L+    +  E+ AL+     ++  +
Sbjct: 239  QALSDEWAEWVYFEEDLEEY-----------LEEYLNSKIALAQEIRALKQKRTVALAQK 287

Query: 6019 EESLFSQNCVVDKXXXXXXXXXXXXXXXPQRWCDLEEEIPLDSADSYPREEHWHFDSESG 5840
                  +   V++                     +  +  L SA+SY     W +DSE  
Sbjct: 288  AYDQAKEKPAVERP--------------------ISPDTVLQSANSYLSGTKWCYDSEDE 327

Query: 5839 SFFPVAPLDKFHNKVYNISFIDYCDLDYQERPEGHVRAETWFFDGCLPGPWFKRGAPLDE 5660
             + PVAPLDKFHNK ++I F+D CD +YQ +P G +  ETWF DGCLPG WFKRG  +DE
Sbjct: 328  DYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQPSGTIYTETWFIDGCLPGCWFKRGVAIDE 387

Query: 5659 AVICEKLPLIGKSPLELMVVHHVEPTGDLLLDIQRAIYAHYRKEVLPKKKYFDLDGTPVM 5480
            AV+CEKLPLIGK+PLELM+ + VEPTGDLLLDIQRA++A+Y KE LP KKYF+L+G P M
Sbjct: 388  AVVCEKLPLIGKTPLELMIQYQVEPTGDLLLDIQRALFAYYEKEALPNKKYFNLNGVPTM 447

Query: 5479 VVLEDWRADLRYCLLVPFVRGNQLRDLMNVIDKPLPGWLLDFPQRRKVGAVQASGWNPFR 5300
            +VLEDWR DLRYCL  PF++G+QL+ LM V++ PLPGWL+DFP+RRK G +QASGWNP R
Sbjct: 448  IVLEDWRCDLRYCLYAPFIQGDQLKHLMVVLNAPLPGWLVDFPKRRKSGVLQASGWNPLR 507

Query: 5299 YFSKQATLGFLDGVMAKLRELLGPVINAASFVWDLVIKAKDYAFSMLDEMIERKGELLRA 5120
            YFSKQATLGFLDGVM KL+EL+GP+INAASFVWDL+IKAKD+AF  L++MIE++GE+L+A
Sbjct: 508  YFSKQATLGFLDGVMTKLKELIGPIINAASFVWDLIIKAKDWAFKALEDMIEKRGEILKA 567

Query: 5119 LLQPLLYVCGFLIFLGSLRGLKAIVEQLGIPLAILTGAAIGIGVYILVQFLGQAHMGALK 4940
            LLQPLLYVCG L+FLGSL+GLK IVE  GIPLAILTGAAIG+GVY+LV FLGQAHMGALK
Sbjct: 568  LLQPLLYVCGLLLFLGSLKGLKTIVESFGIPLAILTGAAIGLGVYVLVTFLGQAHMGALK 627

Query: 4939 RSTKIWELVQSWDKPSEIKHVDEQIIXXXXXXXXXXXXXVRALLASPQSIPECVIDITHM 4760
            RSTKIW+LVQ+WDKPSE+K +DEQII             VR LLASP  +PECVID+THM
Sbjct: 628  RSTKIWDLVQNWDKPSEVKCIDEQIIEVLVEESPDKEEWVRELLASPHYVPECVIDLTHM 687

Query: 4759 KDLLCSGS-VGCGDATRVGVTEASSAGMLFGSSFIWKILLLLCPLSLFGVSTTLSCAKDL 4583
            KDLL          A  VG +EASS GMLFGS FIWKILLLLCPLS+FGVS TLSCAKDL
Sbjct: 688  KDLLSPQKCANFKQAFEVGASEASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 747

Query: 4582 ITIQGGQDAAGRFFQDLVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQEWRSEVLELTTA 4403
            ITIQGGQDAAGRFFQD+VGGTQEVFYT+TG KSEFLDYIYATVGVDFQ WR+EVLELTTA
Sbjct: 748  ITIQGGQDAAGRFFQDIVGGTQEVFYTITGEKSEFLDYIYATVGVDFQAWRAEVLELTTA 807

Query: 4402 TPTSIFLGPQERLKRLRVCKDKADRLILQMDSRKVPGAYITHFNNLLQALDRALVECQQA 4223
            TPTSIFLGPQERLKRLR CKDKADRLILQMDSRKVPGAYITHFN+LLQ+LDRALVECQQA
Sbjct: 808  TPTSIFLGPQERLKRLRACKDKADRLILQMDSRKVPGAYITHFNSLLQSLDRALVECQQA 867

Query: 4222 LSVGKWRKTPACIWLYGDSHVGKSVCSQYXXXXXXXXXDYAQTGRVFSRNGSDSFWSCYK 4043
            LSVGKWRKTPACIWLYGDSHVGKSVCSQY         DYAQTGRVFSRNGSDSFWSCYK
Sbjct: 868  LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 927

Query: 4042 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQA 3863
            NQSAVLYDDFGAVSEGGHFDEAEIIR             LEAKGNTCCTSDFVFITANQA
Sbjct: 928  NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 987

Query: 3862 GLTPAAVVHCKKAFENRRLILAEVTAVDGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3683
            GLTP+AV+HCKKAFENRRLILAEVTAV+GGRYRDRYRFT+HQKNEPY+RDDRFQVMNY+Q
Sbjct: 988  GLTPSAVIHCKKAFENRRLILAEVTAVEGGRYRDRYRFTIHQKNEPYARDDRFQVMNYDQ 1047

Query: 3682 FLQYAVNQSRHHFSEQMDLRDAPHTQIYTAADQIAAEAEEGFKTAGIEIPFCLLKSLSGN 3503
            F+QY VNQS+ HFSEQ+DLRDAPHTQI+ AADQIAAEAEEGFKTAGI IPFC+LK + G 
Sbjct: 1048 FMQYVVNQSKDHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFKTAGITIPFCMLKCIEGR 1107

Query: 3502 QLTYFSEELYKEVTETLAPEDADIIRARLDPGVITQRFQMLLPKAAYVNLKNHFSLGTDP 3323
             +TY+ EE + E+T  L+  DADII +RLDP +ITQR QMLLPKAAYVNLKNHF LGTDP
Sbjct: 1108 MVTYYDEEKFTEMTVELSETDADIIHSRLDPQMITQRLQMLLPKAAYVNLKNHFGLGTDP 1167

Query: 3322 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEEHKRGFVAITKELAQGACKAISSAPFLVK 3143
            FEQPNPYFNCSQRAKVIGRFLKPKVTE QLE  KRGF+ +TKELAQGAC+AIS APFLVK
Sbjct: 1168 FEQPNPYFNCSQRAKVIGRFLKPKVTEAQLETSKRGFLQVTKELAQGACRAISDAPFLVK 1227

Query: 3142 LLLGFGALYFVGLPILGWLKSLFSAPSLMTFAALGTMKASGSLSSSQDQXXXXXXXXXXX 2963
            LLLGFGALYFVGLPILGWLKSL+SAPSLMTFAALGTM+ASGSLSSSQDQ           
Sbjct: 1228 LLLGFGALYFVGLPILGWLKSLYSAPSLMTFAALGTMRASGSLSSSQDQETRRTASGRER 1287

Query: 2962 XRYLLEASGAGAVEAKAQDVETELACLSKHLVGFTSMDFPDRHHRGIAVGGTRVLMVYHV 2783
             RYLLEASG GA+EAK QDVETELA LSKHLVGFTS+DFPD H+RGIA+GGTRVLMVYHV
Sbjct: 1288 RRYLLEASGPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHV 1347

Query: 2782 WLEMQSGCYKVGSLTKTFPFTINRKNCSFQRLGLKDLVLVDFPPTFVSFPLLNLEKWLLS 2603
            WLE+ SGCYKVGSL+KTFPFT+NRKNC FQR+GLKDLV+VDFPPTFVSFP+L LEKWLL+
Sbjct: 1348 WLELHSGCYKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLA 1407

Query: 2602 SHDPFMAGSGWFMEVLFRNNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 2423
            SHDPFMAGSGWFME++F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1408 SHDPFMAGSGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTIC 1467

Query: 2422 DDSGTGYRNDFFYVSQCGTPLVANYGRGKGLRIASIHVVHHFSATEKDVIIAGSGSLITK 2243
            DD+GTGYRNDFFYVSQCGTPLVANYG+GKGL+IASIHVVHHFSATEKD IIAGSGSL+TK
Sbjct: 1468 DDAGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTK 1527

Query: 2242 EEYLEAALLLGDIKHPLETDRLQASGCLSGEEFFDAETVFPEGLLSPSEAPRQATSSEIR 2063
            EEYLEA+LLLGDIKHPLETDR+QASGCLSG+EFFDAETVFPEGLL PS+APRQATSSEI 
Sbjct: 1528 EEYLEASLLLGDIKHPLETDRIQASGCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIH 1587

Query: 2062 KSSISADLELLTGEKKKTEPAIICNRDPRLLDRNLDIFKKGMLKYKAVAADMSPVTDQDT 1883
            KSSIS  LE L GEK+KTEPAII NRD RL DRNLDIFKKGM+KYKAVAADMSPVTD++ 
Sbjct: 1588 KSSISDGLEKLVGEKRKTEPAIISNRDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEE 1647

Query: 1882 KIWDLTWDSVFDLPGGISQRCHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGE 1703
            KIW++TWDS+FDLPGGI  +CHLLSEDENLNGV GDNEYRGMVVSTSEGWPEVLNR NGE
Sbjct: 1648 KIWNVTWDSIFDLPGGIQSKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1707

Query: 1702 AGKERFLLGLPGCYTLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEV 1523
            AGKERFLLGLPGCYTLNR LPMYQR++D++ L  TTIPCIVGLDTAKDERLPLSKIYQ+V
Sbjct: 1708 AGKERFLLGLPGCYTLNRNLPMYQRILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDV 1767

Query: 1522 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTN 1343
            KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGK+MHAKGTN
Sbjct: 1768 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTN 1827

Query: 1342 WFNGDYSRFDGVTPRCLLIEIARRITNVYGDDQGNKRLHLMLAATTRLGIAGRGWYRVSG 1163
            WFNGDYSRFDGVTPRCLLIEI+ RIT +YGD+   +RLHLMLAATTRLG+AG G YRVSG
Sbjct: 1828 WFNGDYSRFDGVTPRCLLIEISNRITKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSG 1887

Query: 1162 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQEAAAY 983
            GIP GFALTVIVNSLVNHFLVRWSWEHMMASSSLFF+DCVELAVVGDDNLVSVKQ AA  
Sbjct: 1888 GIPPGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAED 1947

Query: 982  FNLRTLSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSL 803
            FNL+ LSAFL  FGFTLKDGSDKNKE LP+FNPPEKCDFLKRCFKA GDRYLAPL+W+SL
Sbjct: 1948 FNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2007

Query: 802  SESLHWVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWRRDLLDLCAKNRVPHPTSY 623
            SESLHWVRETN +N  ATQ NVEGFLRELFHYGDK+LYCKWRRDL+ LCA+NRVPHPTSY
Sbjct: 2008 SESLHWVRETNMTNAAATQNNVEGFLRELFHYGDKELYCKWRRDLISLCAENRVPHPTSY 2067

Query: 622  SFEELERSWLSGKAVASFFQKVEPEVVVIRNAASDIAPNVHIVPVKKCLEWRSDEVPLLV 443
            SFEELERSWLSGK VAS F+K EPE+VV+++AASD+APNVHIVP + CL+W+ +EVP +V
Sbjct: 2068 SFEELERSWLSGKTVASIFEKEEPEIVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVV 2127

Query: 442  WCGPNCPNQLKNASNCFVIRAPQGSRYPLRATARGFLHKLHARGDNVYFSGALDQSLVHW 263
            WCGPNCPNQL+NA+ CF+I+APQGSRYPLR+T R  L ++H R D VYF+GALDQSLVHW
Sbjct: 2128 WCGPNCPNQLRNANGCFLIQAPQGSRYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHW 2187

Query: 262  MAAYYASMYRNSFNFSEYMRSFFGEDDKGLLAAVSAAKGW 143
            +AA+YASMYR SF+ S+YM ++FG++DKGLL AV+AAKGW
Sbjct: 2188 VAAFYASMYRESFSHSKYMAAYFGDNDKGLLEAVTAAKGW 2227


>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
          Length = 675

 Score = 1182 bits (3059), Expect = 0.0
 Identities = 559/675 (82%), Positives = 617/675 (91%)
 Frame = -3

Query: 2167 GCLSGEEFFDAETVFPEGLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICN 1988
            GCLSG+EFFDAETVFPEGLL PS+APRQATSSEI KSSIS  LE L GEK+KTEPAII N
Sbjct: 1    GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60

Query: 1987 RDPRLLDRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVFDLPGGISQRCHLLS 1808
            RD RL DRNLDIFKKGM+KYKAVAADMSPVTD++ KIW++TWDS+FDLPGGI  +CHLLS
Sbjct: 61   RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120

Query: 1807 EDENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCYTLNRELPMYQR 1628
            EDENLNGV GDNEYRGMVVSTSEGWPEVLNR NGEAGKERFLLGLPGCYTLNR LPMYQR
Sbjct: 121  EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180

Query: 1627 VVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVA 1448
            ++D++ L  TTIPCIVGLDTAKDERLPLSKIYQ+VKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181  ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240

Query: 1447 ELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1268
            ELMKLHNCIPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241  ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300

Query: 1267 TNVYGDDQGNKRLHLMLAATTRLGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1088
            T +YGD+   +RLHLMLAATTRLG+AG G YRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301  TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360

Query: 1087 EHMMASSSLFFSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNK 908
            EHMMASSSLFF+DCVELAVVGDDNLVSVKQ AA  FNL+ LSAFL  FGFTLKDGSDKNK
Sbjct: 361  EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420

Query: 907  EELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGF 728
            E LP+FNPPEKCDFLKRCFKA GDRYLAPL+W+SLSESLHWVRETN +N  ATQ NVEGF
Sbjct: 421  EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480

Query: 727  LRELFHYGDKQLYCKWRRDLLDLCAKNRVPHPTSYSFEELERSWLSGKAVASFFQKVEPE 548
            LRELFHYGDK+LYCKWRRDL+ LCA+NRVPHPTSYSFEELERSWLSGK VAS F+K EPE
Sbjct: 481  LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540

Query: 547  VVVIRNAASDIAPNVHIVPVKKCLEWRSDEVPLLVWCGPNCPNQLKNASNCFVIRAPQGS 368
            +VV+++AASD+APNVHIVP + CL+W+ +EVP +VWCGPNCPNQL+NA+ CF+I+APQGS
Sbjct: 541  IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600

Query: 367  RYPLRATARGFLHKLHARGDNVYFSGALDQSLVHWMAAYYASMYRNSFNFSEYMRSFFGE 188
            RYPLR+T R  L ++H R D VYF+GALDQSLVHW+AA+YASMYR SF+ S+YM ++FG+
Sbjct: 601  RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660

Query: 187  DDKGLLAAVSAAKGW 143
            +DKGLL AV+AAKGW
Sbjct: 661  NDKGLLEAVTAAKGW 675


>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
          Length = 548

 Score =  952 bits (2462), Expect = 0.0
 Identities = 467/547 (85%), Positives = 497/547 (90%)
 Frame = -3

Query: 4663 FIWKILLLLCPLSLFGVSTTLSCAKDLITIQGGQDAAGRFFQDLVGGTQEVFYTLTGSKS 4484
            FIWKILLLLCPLS+FGVS TLSCAKDLITIQGGQDAAGRFFQD+VGGTQEVFYT+TG KS
Sbjct: 2    FIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEKS 61

Query: 4483 EFLDYIYATVGVDFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKADRLILQMDSR 4304
            EFLDYIYATVGVDFQ WR+EVLELTTATPTSIFLGPQERLKRLR CKDKADRLILQMDSR
Sbjct: 62   EFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDSR 121

Query: 4303 KVPGAYITHFNNLLQALDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXXXX 4124
            KVPGAYITHFN+LLQ+LDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQY    
Sbjct: 122  KVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD 181

Query: 4123 XXXXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXX 3944
                 DYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR       
Sbjct: 182  VLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPL 241

Query: 3943 XXXXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKKAFENRRLILAEVTAVDGGRYR 3764
                  LEAKGNTCCTSDFVFITANQAGLTP+AV+HCKKAFENRRLILAEVTAV+GGRYR
Sbjct: 242  PLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRYR 301

Query: 3763 DRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSRHHFSEQMDLRDAPHTQIYTAADQ 3584
            DRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQS+ HFSEQ+DLRDAPHTQI+ AADQ
Sbjct: 302  DRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAADQ 361

Query: 3583 IAAEAEEGFKTAGIEIPFCLLKSLSGNQLTYFSEELYKEVTETLAPEDADIIRARLDPGV 3404
            IAAEAEEGFKTAGI IPFC+LK + G  +TY+ EE + E+T  L+  DADII +RLDP +
Sbjct: 362  IAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQM 421

Query: 3403 ITQRFQMLLPKAAYVNLKNHFSLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEEH 3224
            ITQR QMLLPKAAYVNLKNHF LGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTE QLE  
Sbjct: 422  ITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLETS 481

Query: 3223 KRGFVAITKELAQGACKAISSAPFLVKLLLGFGALYFVGLPILGWLKSLFSAPSLMTFAA 3044
            KRGF+ +TKELAQGAC+AIS APFLVKLLLGFGALYFVGLPILGWLKSL+SAPSLMTFAA
Sbjct: 482  KRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFAA 541

Query: 3043 LGTMKAS 3023
            LGTM+AS
Sbjct: 542  LGTMRAS 548


>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
          Length = 719

 Score =  803 bits (2074), Expect = 0.0
 Identities = 420/752 (55%), Positives = 513/752 (68%), Gaps = 8/752 (1%)
 Frame = -3

Query: 6898 MGYSRGARGGADKPKLCGVCFASFPDAQERKAHYKKYNCRDSFGNLGGLVETGRCLKAKS 6719
            MGYSRG+RGGADKPKLCG+CFASFPDAQERK HY+KYNCRDS G LGGLV TGRC  AK 
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 6718 ANIEIMRGFEEFRQ---DDGTYEEIEVEYMSDLVSFSSMIPFAGIRFGTVNQTTPQVGSS 6548
             N+++    +E      D  T +++E+ +MSDL  F+       I     +  T   G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 6547 YPEK-IYRAPGYNIEEYTVLQAPRAGA--RDFLAPDRVHDAEILVRNARYMEVSRGFGSS 6377
            Y  + IY+APG ++ +Y   Q  +     R+FL  DR +DAE+L    R   V  GFGS 
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 6376 PQDRTGLGGEDFKYRFDNDKLFSDLDKGLTRFVSAGFTTSGFPVLKVVPDLTLQDLAEMT 6197
              D TGLGG+  KYRFD+D L+SD  KGL RFVSAGFT S    L +   LTLQD+ EMT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLDL--KLTLQDVDEMT 238

Query: 6196 QALSDDWIEWCXXXXXXXXXXXXXXXXXXXYVEETLSPATLVMAEV-ALEPSLQDSVVGE 6020
            QALSD+W EW                     +EE L+    +  E+ AL+     ++  +
Sbjct: 239  QALSDEWAEWVYFEEDLEEY-----------LEEYLNSKIALAQEIRALKQKRTVALAQK 287

Query: 6019 EESLFSQNCVVDKXXXXXXXXXXXXXXXPQRWCDLEEEIPLDSADSYPREEHWHFDSESG 5840
                  +   V++                     +  +  L SA+SY     W +DSE  
Sbjct: 288  AYDQAKEKPAVERP--------------------ISPDTVLQSANSYLSGTKWCYDSEDE 327

Query: 5839 SFFPVAPLDKFHNKVYNISFIDYCDLDYQERPEGHVRAETWFFDGCLPGPWFKRGAPLDE 5660
             + PVAPLDKFHNK ++I F+D CD +YQ +P G +  ETWF DGCLPG WFKRG  +DE
Sbjct: 328  DYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQPSGTIYTETWFIDGCLPGCWFKRGVAIDE 387

Query: 5659 AVICEKLPLIGKSPLELMVVHHVEPTGDLLLDIQRAIYAHYRKEVLPKKKYFDLDGTPVM 5480
            AV+CEKLPLIGK+PLELM+ + VEPTGDLLLDIQRA++A+Y KE LP KKYF+L+G P M
Sbjct: 388  AVVCEKLPLIGKTPLELMIQYQVEPTGDLLLDIQRALFAYYEKEALPNKKYFNLNGVPTM 447

Query: 5479 VVLEDWRADLRYCLLVPFVRGNQLRDLMNVIDKPLPGWLLDFPQRRKVGAVQASGWNPFR 5300
            +VLEDWR DLRYCL  PF++G+QL+ LM V++ PLPGWL+DFP+RRK G +QASGWNP R
Sbjct: 448  IVLEDWRCDLRYCLYAPFIQGDQLKHLMVVLNAPLPGWLVDFPKRRKSGVLQASGWNPLR 507

Query: 5299 YFSKQATLGFLDGVMAKLRELLGPVINAASFVWDLVIKAKDYAFSMLDEMIERKGELLRA 5120
            YFSKQATLGFLDGVM KL+EL+GP+INAASFVWDL+IKAKD+AF  L++MIE++GE+L+A
Sbjct: 508  YFSKQATLGFLDGVMTKLKELIGPIINAASFVWDLIIKAKDWAFKALEDMIEKRGEILKA 567

Query: 5119 LLQPLLYVCGFLIFLGSLRGLKAIVEQLGIPLAILTGAAIGIGVYILVQFLGQAHMGALK 4940
            LLQPLLYVCG L+FLGSL+GLK IVE  GIPLAILTGAAIG+GVY+LV FLGQAHMGALK
Sbjct: 568  LLQPLLYVCGLLLFLGSLKGLKTIVESFGIPLAILTGAAIGLGVYVLVTFLGQAHMGALK 627

Query: 4939 RSTKIWELVQSWDKPSEIKHVDEQIIXXXXXXXXXXXXXVRALLASPQSIPECVIDITHM 4760
            RSTKIW+LVQ+WDKPSE+K +DEQII             VR LLASP  +PECVID+THM
Sbjct: 628  RSTKIWDLVQNWDKPSEVKCIDEQIIEVLVEESPDKEEWVRELLASPHYVPECVIDLTHM 687

Query: 4759 KDLLC-SGSVGCGDATRVGVTEASSAGMLFGS 4667
            KDLL          A  VG +EASS GMLFGS
Sbjct: 688  KDLLSPQKCANFKQAFEVGASEASSPGMLFGS 719


>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
          Length = 257

 Score =  482 bits (1241), Expect = e-133
 Identities = 227/257 (88%), Positives = 248/257 (96%)
 Frame = -3

Query: 2938 GAGAVEAKAQDVETELACLSKHLVGFTSMDFPDRHHRGIAVGGTRVLMVYHVWLEMQSGC 2759
            G GA+EAK QDVETELA LSKHLVGFTS+DFPD H+RGIA+GGTRVLMVYHVWLE+ SGC
Sbjct: 1    GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60

Query: 2758 YKVGSLTKTFPFTINRKNCSFQRLGLKDLVLVDFPPTFVSFPLLNLEKWLLSSHDPFMAG 2579
            YKVGSL+KTFPFT+NRKNC FQR+GLKDLV+VDFPPTFVSFP+L LEKWLL+SHDPFMAG
Sbjct: 61   YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120

Query: 2578 SGWFMEVLFRNNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDSGTGYR 2399
            SGWFME++F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD+GTGYR
Sbjct: 121  SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180

Query: 2398 NDFFYVSQCGTPLVANYGRGKGLRIASIHVVHHFSATEKDVIIAGSGSLITKEEYLEAAL 2219
            NDFFYVSQCGTPLVANYG+GKGL+IASIHVVHHFSATEKD IIAGSGSL+TKEEYLEA+L
Sbjct: 181  NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240

Query: 2218 LLGDIKHPLETDRLQAS 2168
            LLGDIKHPLETDR+QAS
Sbjct: 241  LLGDIKHPLETDRIQAS 257


>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
            gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
            spherical virus]
          Length = 2079

 Score =  341 bits (875), Expect = 3e-90
 Identities = 375/1343 (27%), Positives = 566/1343 (42%), Gaps = 94/1343 (6%)
 Frame = -3

Query: 4447 DFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKA----DRLILQMDSRKVPGAYIT 4280
            DF EW   V      T  S+ L P +RL+ +R   D+             + K P   +T
Sbjct: 605  DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664

Query: 4279 HFNNLLQALDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYXXXXXXX 4115
             F    Q L   L +C  ALS        R  P  I LY ++   GKS+           
Sbjct: 665  EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720

Query: 4114 XXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 3935
              +  +T R  +RN +  F + Y +Q   L D+FGA  +  + DE  ++           
Sbjct: 721  SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780

Query: 3934 XXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCK-KAFENRRLILAEVTAVDGGRYRDR 3758
               L  K N   TS  +  TAN+    P   +      F  RR ILAEV    G  Y   
Sbjct: 781  MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPYFHE 839

Query: 3757 YRFTLHQKNEPYSRDD--------------RFQVMNYEQFLQYAVNQSRHHFSEQMDLRD 3620
            +     +  +    D                F  +  EQF+ + +NQ  +   EQ  +  
Sbjct: 840  FILLKARTEQKIYLDQALREVASPIHLSPAEFYAVCAEQFVNF-LNQQGNALIEQQGVS- 897

Query: 3619 APHTQIYTAADQIAAEAEEGFKTAGIEIPFCLLK------SLSGNQLTYFS---EELYKE 3467
                  Y  +D  +   +      G++   C ++      SLS    T F    E ++  
Sbjct: 898  ------YVRSDDFSFLKDYLQYKMGLDFQQCEIERIVTDYSLSIKNQTIFPAEHEHIFSR 951

Query: 3466 VTETLAPEDADIIRARLDPGVITQRFQMLLPKAAYVNLKNHFSLGTDPFEQPNPYFNCSQ 3287
                L       +   LD  V T+ F   L K    N  N       P+E    Y  C  
Sbjct: 952  WRAELEALSLSELITMLDKHV-TETFVYTLIKE---NHSNVVMSNLTPYECLI-YSFCKD 1006

Query: 3286 RAKVIGRFLKPKVTEEQLEEHKRGFVAITKELAQGACKAISSAPFLVKLLLGFGALYFVG 3107
            + K         + EE++   K+ ++A   E      +   + P  V L+L   A   VG
Sbjct: 1007 KYKKETDATFSSLPEEEV---KQPWLA---EFLSFTARLCLNVPKWVTLVLALCAFCLVG 1060

Query: 3106 LPILGWLKSLFS-APSLMTFAALGTMKASGSLSSS----------------------QDQ 2996
              ++ +   LF+ A ++ +  A  ++ A G   S                        D 
Sbjct: 1061 YVLIKFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVKVHFVKTSFQPSDW 1120

Query: 2995 XXXXXXXXXXXXRYLLEASGAGAVEAKAQDVETELACLSKHLVGFTSMDFPDRHHRGIAV 2816
                          + +   A  +  +  D    +  L KH V   + +     +  IA+
Sbjct: 1121 KGINVKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLIA-EHSKVVYNAIAL 1179

Query: 2815 GGTRVLMVYHVWLEMQSGCYKV-GSLTKTFPFTINRKNCSFQRLGLKDLVLVDFPPTFVS 2639
            G    L   HVW  M +  Y + G         IN       +L  +DLV+V  P +   
Sbjct: 1180 GNRNFLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKNRDLVVVQLPDSVPP 1239

Query: 2638 FPLLNLEKWLLS-SHDPFMAGSGWFM-EVLFRNNGVLEVAREEADYTLLD---TNDVYDA 2474
            F  L  + +L + +  P +A +   + E L+    V ++ ++   +  L    + D Y  
Sbjct: 1240 FSALPKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYPFENLPQIHSRDTYSC 1299

Query: 2473 AFLKGVGLNKCVRYTICDDSGTGYRNDFFYVSQCGTPLVANYGRGKGLRIASIHVVHHFS 2294
              L    +  C  YT    +G            C +PL++  G G+ + +  +HV     
Sbjct: 1300 GSLGSKPMPACYSYTFDTFAGL-----------CTSPLISMDG-GRCV-LLGLHV----- 1341

Query: 2293 ATEKDVIIAGSGSLITKEEYLEAALL----LGDIKHPLETDRLQASG--CLSGEEFFDAE 2132
            A +K  +  G   ++T E++ +         G  +  + T R ++ G  CL G+      
Sbjct: 1342 AGDKSKM--GYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLGKWTGPKP 1399

Query: 2131 TVFPEGLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLL---DRN 1961
                   L+PS          +    I  D+         TEPAI+  +DPRL    +++
Sbjct: 1400 YFLENSSLTPS----------LIHDCIDIDMT--------TEPAILSKKDPRLQYTNNKD 1441

Query: 1960 LDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVF-DLPGGISQRCHLLSEDENLNGV 1784
             D F  GM KY   A       D+D ++++   D VF ++P      C  LS D+  NG+
Sbjct: 1442 FDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEIP---MFTCEDLSNDQVCNGI 1494

Query: 1783 VGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCYTL--NRELPMYQRVVDMEE 1610
              D+   G+V+ T+EG+P    R  G  GK     G PG + +  N  L     V ++  
Sbjct: 1495 EDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGDWHIVPNSLLANELNVKELN- 1553

Query: 1609 LCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1430
            L +     ++G+D  KDE++  SK+Y + KTRLFTILP++YN LVRKYF SFV++LM LH
Sbjct: 1554 LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALH 1613

Query: 1429 NCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGD 1250
            N +PTKVGI+P+  +W+IL   +H+KGTNWFNGDYSRFDG+TPR +L  I +RI+  Y +
Sbjct: 1614 NEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYAN 1673

Query: 1249 DQG-------------NKRLHLMLAATTRLGIAGRGWYRVSGGIPSGFALTVIVNSLVNH 1109
                              R  LM   +TR G+     + V+ GIPSGF LTVIVNSLVN 
Sbjct: 1674 KSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNS 1733

Query: 1108 FLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLR 950
            F V +++  + +S    +L+    F   V  AV GDDNL+SV       FNL T+S  L 
Sbjct: 1734 FFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLL 1793

Query: 949  NFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLHWVRETN 770
              G TLK+G+DKN+E L  F P EK DFLKR F       +APL  ++++E LHWVR+  
Sbjct: 1794 EHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRK-G 1852

Query: 769  TSNPVATQTNVEGFLRELFHYGD 701
              +  AT  N +  L E   +G+
Sbjct: 1853 LGDADATLENCKSALFEALFHGE 1875


>gb|AAZ76594.1| polyprotein [Stocky prune virus]
          Length = 795

 Score =  333 bits (853), Expect = 9e-88
 Identities = 226/610 (37%), Positives = 330/610 (54%), Gaps = 32/610 (5%)
 Frame = -3

Query: 2398 NDFFYVSQCGTPLVANYG---RGKGLRIASIHVVHHFSATEKDVIIA-GSGSLITKEEYL 2231
            + +     CG    A  G    G G+    + ++H  +   + V +  G G+ +T+E+ +
Sbjct: 22   HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81

Query: 2230 EAALLLGDIKHPLETDRLQASGCLSGEE----FFDAETVFPEGLLSP-SEAPRQATSSEI 2066
               +LL         D +    CL   E        + V   G L   S+AP  +  +++
Sbjct: 82   GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132

Query: 2065 RKSSISADLELLTGEKKKTEPAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPV- 1898
             +S IS  ++L      +T PAII N DPR+    + + D+F  GM KYK +A     V 
Sbjct: 133  ERSLISDIVDLPC----ETVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188

Query: 1897 -TDQDTKIWDLTWDSVFDLPGGISQRCHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVL 1721
             +D+     D   D +FD     S+    +SE+  L G+     +  +V STSEG+P +L
Sbjct: 189  GSDEQQDFHDAL-DDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWIL 247

Query: 1720 NRTNGEAGKERFLLGLPGCYTLNRELPMYQRVVDME-ELCETTIPCIVGLDTAKDERLPL 1544
             R +G  GK   L G+PGC++++      +   ++E  L +  +P ++G++  KDER+  
Sbjct: 248  ERPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVAR 307

Query: 1543 SKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKR 1364
             K+  + KTRLFT+LP EYN LVR+YF  FV++ M+ HN  P KVGINP   +WT L + 
Sbjct: 308  KKVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYEN 367

Query: 1363 MHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVY--GDDQ---GNK-RLHLMLAATTR 1202
            + +KGTNWFNGD+ RFDG+TPR +++++  RI  +Y  GD      NK R  LML A+ R
Sbjct: 368  LRSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDR 427

Query: 1201 LGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCV 1043
              IAGR  Y+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S              V
Sbjct: 428  YAIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREV 487

Query: 1042 ELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPDFNP-PEKCDF 866
              AV GDDNLVSV  + ++ +NL ++S+FLR  G  LK+G  K++E+ P F+P P  CDF
Sbjct: 488  HFAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDF 547

Query: 865  LKRCF-KAYGDRYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLRE--LFHYGDKQ 695
            LKR F      R LAPL   SL    HWVR++        Q NV+G LRE   F     +
Sbjct: 548  LKRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYE 606

Query: 694  LYCKWRRDLL 665
             +   RR LL
Sbjct: 607  FFHDMRRKLL 616


>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
          Length = 721

 Score =  308 bits (790), Expect = 2e-80
 Identities = 209/539 (38%), Positives = 291/539 (53%), Gaps = 28/539 (5%)
 Frame = -3

Query: 2095 APRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLL---DRNLDIFKKGMLKYK 1925
            AP     + +  S IS D+++    +  TEPAI+  +DPRL    D + + FK GMLKY 
Sbjct: 50   APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105

Query: 1924 AVAADMSPVTDQDTKIWDLTWDSVF-DLPGGISQRCHLLSEDENLNGVVGDNEYRGMVVS 1748
              A   +    +D + ++   D VF ++P      C  L++DE  NG+  D     +V+ 
Sbjct: 106  VEAHGFN----EDEEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQ 158

Query: 1747 TSEGWPEVLNRTNGEAGKERFLLGLPGCYTLNRELPMYQRVVDMEE-LCETTIPCIVGLD 1571
            TSEG+P    R  G  GK     G PG + +     ++  +  ME  L +     ++G+D
Sbjct: 159  TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218

Query: 1570 TAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLG 1391
              KDE++  SK+Y + KTRLFTILP+ YN LVRKYF SFV++LM LHN  PTKVGINPL 
Sbjct: 219  FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278

Query: 1390 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGDDQG----NKRLH- 1226
             +W IL   + AKG NWFNGDYSRFDG+TPR +L+ I +RI+N + +       +K L  
Sbjct: 279  NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338

Query: 1225 --------LMLAATTRLGIA-GRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA 1073
                    LM  A+TR G+  G  WY V+ GIPSGF LTVIVNSLVN F + +++  +  
Sbjct: 339  NGDLARSLLMDMASTRYGLTQGDLWY-VNSGIPSGFPLTVIVNSLVNSFFIHYAYRSICK 397

Query: 1072 SSS-------LFFSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDK 914
             S+         F   V  AV GDDN+VSV       FNL  L+ FL+++G TLK+G+DK
Sbjct: 398  KSNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADK 457

Query: 913  NKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLHWVRETNTSNPVATQTNVE 734
            ++E L  F P  K DFLKR F       ++PL  ++++E LHWVR+  T      +    
Sbjct: 458  DEEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRKGMTEVDAIVENCQS 517

Query: 733  GFLRELFHYGDKQLYCKWRRDLLDLCAKN--RVPHPTSYSFEELERSWLSGKAVASFFQ 563
                 +FH   +  Y      +   C KN   V  PT   F++     LSG + A+  Q
Sbjct: 518  AAFEAVFH--GEHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 571


>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
          Length = 2235

 Score =  307 bits (786), Expect = 5e-80
 Identities = 243/742 (32%), Positives = 350/742 (47%), Gaps = 37/742 (4%)
 Frame = -3

Query: 2824 IAVGGTRVLMVYHVWLEMQSGCYKV-GSLTKTFPFTINRKNCSFQRLGLKDLVLVDFP-- 2654
            IA+GG   L+  HVW  M +  Y + G         I  +     +L  +DLV+V  P  
Sbjct: 1335 IALGGRNFLITKHVWDLMPACNYGLYGYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDS 1394

Query: 2653 -PTFVSFP----LLNLEKWLLSSHDPFMAGSGWFMEVLFRNNGVLEVAREEADYTLLD-- 2495
             P F S P    L N+ K   +++   +       + LF    V ++ +    +  L   
Sbjct: 1395 VPPFTSLPRDIFLENMAKAPKTANACLVVA-----KPLFERRSVAKLEQTIYPFKQLPQV 1449

Query: 2494 -TNDVYDAAFLKGVGLNKCVRYTICDDSGTGYRNDFFYVSQCGTPLVANYGRGKGLRIAS 2318
             + D Y    L    +  C  Y               Y   C +PL+A  G G+ + I  
Sbjct: 1450 HSKDTYSCGSLGSKQMPACYSYVFET-----------YAGLCTSPLIAQEG-GRCI-ILG 1496

Query: 2317 IHVVHHFSATEKDVIIAGSGSLITKEEYLEAALLLGDIKHPLETD-RLQASGCLSGEEFF 2141
            +HVV   S         G   ++T +++ + AL     + P E     + S C       
Sbjct: 1497 LHVVGDRSKM-------GYAQIVTLDDFSDVALSDKVGQGPEEMYIPTKNSECFGSVTKL 1549

Query: 2140 DAETVFPEGLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLLDR- 1964
             A T            P     + +  S IS  +++    ++ TEPAI+  RD RL D  
Sbjct: 1550 GAWT---------GPKPYFLEKTTLIPSLISTSIDV----ERTTEPAILSQRDKRLKDSI 1596

Query: 1963 --NLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVF-DLPGGISQRCHLLSEDENL 1793
                D+F +GM KY   A  +    D+D ++++   D VF ++P      C  L+ D+  
Sbjct: 1597 NPEFDVFLEGMKKYAVEAHSL----DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVC 1649

Query: 1792 NGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCYTLNRELPMYQRVVDME 1613
            NG+  D    G+V+ T+EG+P    R  G +GK     G PG + +     +   +   E
Sbjct: 1650 NGIEDDPYAEGIVMQTAEGFPFCTQRPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKE 1709

Query: 1612 -ELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMK 1436
              L       ++G+D  KDE++  SK+Y + KTRLFTILP++YN LVRKYF SFV+ +M 
Sbjct: 1710 VALSRGLFEPLIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSFVSHIMT 1769

Query: 1435 LHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVY 1256
             HN IP KVGI+ L  +W+IL  ++ +KGTNWFNGDYSRFDG+TPR +L  I +RI   Y
Sbjct: 1770 QHNTIPVKVGIDCLSNEWSILYHQLRSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFY 1829

Query: 1255 GD-------------DQGNKRLHLMLAATTRLGIAGRGWYRVSGGIPSGFALTVIVNSLV 1115
             +             +    R  LM  A+TR G+     + V+ GIPSGF LTVIVNSLV
Sbjct: 1830 NNKNSLAITDSNLSINSDLARSLLMDMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLV 1889

Query: 1114 NHFLVRWSWEHMMASSSL-------FFSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAF 956
            N+F + +S+  +M    L        F   V  A  GDDNLVSV       FNL  ++  
Sbjct: 1890 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLVKIADL 1949

Query: 955  LRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLHWVRE 776
            L   G TLK+G+DKN+E L  F P EK DFLKR F  Y    +APL  ++++E LHW+R+
Sbjct: 1950 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK 2009

Query: 775  TNTSNPVATQTNVEGFLRELFH 710
                     +         LFH
Sbjct: 2010 GLGEADATLENCSSAAFEALFH 2031



 Score = 67.4 bits (163), Expect = 9e-08
 Identities = 62/230 (26%), Positives = 93/230 (40%), Gaps = 6/230 (2%)
 Frame = -3

Query: 4447 DFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKAD----RLILQMDSRKVPGAYIT 4280
            DF +W  +V      T  S+ + P ERLK LR+  D+ +           + K P   +T
Sbjct: 766  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825

Query: 4279 HFNNLLQALDRALVECQQALSVGKWRKTPACIWLYGDS-HVGKSVCSQYXXXXXXXXXDY 4103
             FN L   L  A     +A    + R  P  + LY ++   GKS+               
Sbjct: 826  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885

Query: 4102 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 3923
             +T R  +RN +  F + Y+++   L D+FGA  +  + DE  ++              +
Sbjct: 886  PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945

Query: 3922 EAKGNTCCTSDFVFITANQAGLTPAAVVHCK-KAFENRRLILAEVTAVDG 3776
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 946  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994


>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
          Length = 709

 Score =  305 bits (782), Expect = 2e-79
 Identities = 192/463 (41%), Positives = 265/463 (57%), Gaps = 26/463 (5%)
 Frame = -3

Query: 2011 TEPAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVF-DL 1844
            TEPAI+  +DPRL    +++ D F  GM KY   A       D+D ++++   D VF ++
Sbjct: 52   TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107

Query: 1843 PGGISQRCHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGC 1664
            P      C  LS D+  NG+  D+   G+V+ T+EG+P    R  G  GK     G PG 
Sbjct: 108  P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164

Query: 1663 YTL--NRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPME 1490
            + +  N  L     V ++  L +     ++G+D  KDE++  SK+Y + KTRLFTILP++
Sbjct: 165  WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223

Query: 1489 YNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1310
            YN LVRKYF SFV++LM LHN +PTKVGI+P+  +W+IL   +H+KGTNWFNGDYSRFDG
Sbjct: 224  YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283

Query: 1309 VTPRCLLIEIARRITNVYGDDQG-------------NKRLHLMLAATTRLGIAGRGWYRV 1169
            +TPR +L  I +RI+  Y +                  R  LM   +TR G+     + V
Sbjct: 284  ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343

Query: 1168 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 1010
            + GIPSGF LTVIVNSLVN F V +++  + +S    +L+    F   V  AV GDDNL+
Sbjct: 344  TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403

Query: 1009 SVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRY 830
            SV       FNL T+S  L   G TLK+G+DKN+E L  F P EK DFLKR F       
Sbjct: 404  SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463

Query: 829  LAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLRELFHYGD 701
            +APL  ++++E LHWVR+    +  AT  N +  L E   +G+
Sbjct: 464  VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHGE 505


>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
            gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            Contains: RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|50399319|emb|CAF21713.1| polyprotein
            [Cherry rasp leaf virus]
          Length = 2250

 Score =  301 bits (772), Expect = 2e-78
 Identities = 247/748 (33%), Positives = 354/748 (47%), Gaps = 43/748 (5%)
 Frame = -3

Query: 2824 IAVGGTRVLMVYHVWLEMQSGCYKVG--SLTKTFPFTINRKNCSFQRLGLKDLVLVDFP- 2654
            IA+GG   L+  HVW  M +  Y +   ++ K   F   R     Q  G +DLV+V  P 
Sbjct: 1350 IALGGRNFLITKHVWDLMPACNYGLYGYAVAKDRIFISPRIRPCAQLKG-RDLVIVQLPD 1408

Query: 2653 --PTFVSFP----LLNLEKWLLSSHDPFMAGSGWFMEVLFRNNGVLEVAREEADYTLLD- 2495
              P F S P    L N+ K   +++   +       + LF    V ++ +    +  L  
Sbjct: 1409 SVPPFTSLPRDIFLENMAKAPKTANACLVVA-----KPLFERRSVAKLEQTIYPFKQLPQ 1463

Query: 2494 --TNDVYDAAFLKGVGLNKCVRYTICDDSGTGYRNDFFYVSQCGTPLVANYGRGKGLRIA 2321
              + D Y    L    +  C  Y               Y   C +PL+A  G G+ + I 
Sbjct: 1464 VHSKDTYSCGSLGSKQMPACYSYVFET-----------YAGLCTSPLIAQEG-GRCI-IL 1510

Query: 2320 SIHVVHHFSATEKDVIIAGSGSLITKEEYLEAALLLGDIKHPLETD-RLQASGCLSGEEF 2144
             +HVV   S         G   ++T +++ + AL     + P E     + S C      
Sbjct: 1511 GLHVVGDRSKM-------GYAQIVTLDDFSDVALSDKVGQGPEEMYIPTKNSECFGSVTK 1563

Query: 2143 FDAETVFPEGLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLLDR 1964
              A T            P     + +  S IS  +++    ++ TEPAI+  RD RL D 
Sbjct: 1564 LGAWT---------GPKPYFLEKTSLIPSLISTSIDV----ERTTEPAILSQRDKRLKDS 1610

Query: 1963 ---NLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVF-DLPGGISQRCHLLSEDEN 1796
                 D+F +GM KY   A  +    D+D ++++   D VF ++P      C  L+ D+ 
Sbjct: 1611 INPEFDVFLEGMKKYAVEAHSL----DEDLEVFEDALDRVFLEIP---EHACEDLTNDQV 1663

Query: 1795 LNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCY------TLNRELPMY 1634
             NG+  D    G+V+ T+EG+P    R  G +GK     G PG +       L  E+   
Sbjct: 1664 CNGIEDDPYAEGIVMQTAEGFPFCTQRPAGASGKSWLFAGAPGDWHIVPGSLLANEMHK- 1722

Query: 1633 QRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSF 1454
            + V     L E     ++G+D  KDE++  SK+Y + KTRLFTILP++YN LVRKYF S 
Sbjct: 1723 KEVAPSRGLFEP----LIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSS 1778

Query: 1453 VAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIAR 1274
            V+ +M  HN IP KVGI+ L  +W+IL  ++ +KGTNWFNGDYSRFDG+TPR +L  I +
Sbjct: 1779 VSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTNWFNGDYSRFDGITPRNVLQGIVK 1838

Query: 1273 RITNVYGD------DQGNKRLHLMLA-------ATTRLGIAGRGWYRVSGGIPSGFALTV 1133
            RI   Y +         N  ++  LA       A+TR G+     + V+ GIPSGF LTV
Sbjct: 1839 RINKFYNNKNSLAITDSNLSINSDLARSLLTDMASTRYGLTNGDLWYVTSGIPSGFPLTV 1898

Query: 1132 IVNSLVNHFLVRWSWEHMMASSSL-------FFSDCVELAVVGDDNLVSVKQEAAAYFNL 974
            IVNSLVN+F + +S+  +M    L        F   V  A  GDDNLVSV       FNL
Sbjct: 1899 IVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNL 1958

Query: 973  RTLSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSES 794
              ++  L   G TLK+G+DKN+E L  F P EK DFLKR F  Y    +APL  ++++E 
Sbjct: 1959 VKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQGHVVAPLNPVNITER 2018

Query: 793  LHWVRETNTSNPVATQTNVEGFLRELFH 710
            LHW+R+         +         LFH
Sbjct: 2019 LHWIRKGLGEADATLENCSSAAFEALFH 2046



 Score = 68.9 bits (167), Expect = 3e-08
 Identities = 63/230 (27%), Positives = 93/230 (40%), Gaps = 6/230 (2%)
 Frame = -3

Query: 4447 DFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKAD----RLILQMDSRKVPGAYIT 4280
            DF +W  +V      T  S+ + P ERLK LR+  D+ +           + K P   +T
Sbjct: 781  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840

Query: 4279 HFNNLLQALDRALVECQQALSVGKWRKTPACIWLYGDS-HVGKSVCSQYXXXXXXXXXDY 4103
             FN L   L  A     +A    + R  P  + LY ++   GKS+               
Sbjct: 841  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900

Query: 4102 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 3923
             +T R  +RN +  F + Y++Q   L D+FGA  +  + DE  ++              +
Sbjct: 901  PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960

Query: 3922 EAKGNTCCTSDFVFITANQAGLTPAAVVHCK-KAFENRRLILAEVTAVDG 3776
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 961  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009


>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
            polyprotein [Arracacha virus B]
          Length = 2314

 Score =  301 bits (770), Expect = 4e-78
 Identities = 260/842 (30%), Positives = 396/842 (47%), Gaps = 39/842 (4%)
 Frame = -3

Query: 2899 TELACLSKHLVGFTSMDFPDRHHRGIAVGGTRVLMVYHVWLEMQSGCYK--VGSLTKTFP 2726
            +EL    KH+    ++     +H  + + G + L V HV+  M  G Y+  VG       
Sbjct: 1231 SELVSFLKHVAVMRNIVTEQDYHL-LFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288

Query: 2725 FTINRKNCSFQRLGLKDLVLVDFPPTFVSFP------LLNLEKWLLSSHDPFMAGSGWFM 2564
            F  NR     + L  KDL +V    T   F       L + E+ L      F   S  ++
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVPPFAPLAKRLLFDEEEKLPRQALGFFCHSEPYV 1348

Query: 2563 EVLFRNNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDSGTGYRNDFFY 2384
            E L R +G+     ++ + T+ +  D+        + L K  +Y +    G         
Sbjct: 1349 E-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF-------- 1398

Query: 2383 VSQCGTPLVANYGRGKGLRIASIHVVHHFSATEKDVIIAGSGSLITKEEYLEAALLLGDI 2204
               CG  L+       G++I  +H     +A ++ +    +   +   E    +  +G+ 
Sbjct: 1399 ---CGDVLLQVCS--SGVKILGMHT----TAGKQSIWRYANTVTLQDIEGAYPSEWVGE- 1448

Query: 2203 KHPLETDRLQASGCLSGEEFFDAETVFPEGLLSPSEAPRQATSSEIRKSSISADLELLTG 2024
            +  L         C +GE    A     EGL      P   T + +  S IS+DL+    
Sbjct: 1449 EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKEDDD 1499

Query: 2023 EKKKT--EPAIICNRDPRLLD---RNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWD 1859
                +   PAI+ +RDPR+++      D FK GMLKY   A    P  + D    D   D
Sbjct: 1500 NHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAG---PFDEADEDFQDALDD 1556

Query: 1858 SVFDLPGGISQR----------CHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVLNRTN 1709
               D+    +++          C +L+E++ LNG +  +    +V  T+EG+P    R  
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616

Query: 1708 GEAGKERFLLGLPGCYTLNRELPMYQRVVDMEE-LCETTIPCIVGLDTAKDERLPLSKIY 1532
            G++GK   L G+PG ++L +E P+   +  +E+ L       ++G+D  KDE++  +K+ 
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676

Query: 1531 QEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAK 1352
             + K RLFTILP  YN +VR+++  FVA LM+ HN  P KVG+N    +W  L  ++ A 
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736

Query: 1351 GTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGDDQ-----GNKRLHLMLA-------AT 1208
            G NWFNGDYSRFDG+TPRC+L  +A RI+  Y  D+       K++   +A       A 
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796

Query: 1207 TRLGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 1037
            +R GIAG G Y+VS GIPSGF LTVIVNSLVN F + +++  +M+    S  +F+  V  
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856

Query: 1036 AVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKR 857
            AV GDDNLVSV +     +NL+T++ FL  FG TLK+G++K++E L  F P E  DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916

Query: 856  CFKAYGDRYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWR 677
             F  +    L  L   +  E LHWVR+  T    A   N    L E   +G  + Y   R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974

Query: 676  RDLLDLCAKNRVPHPTSYSFEELERSWLSGKAVASFFQKVEPEVVVIRNAASDIAPNVHI 497
              L+ +  K ++P     +F + E ++ +     SF +                A NVHI
Sbjct: 1975 SKLVRVLGKRKLP----CNFPDFETAFTAKVNGQSFVETCR-------------AVNVHI 2017

Query: 496  VP 491
             P
Sbjct: 2018 PP 2019


>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
          Length = 707

 Score =  291 bits (746), Expect = 2e-75
 Identities = 185/467 (39%), Positives = 254/467 (54%), Gaps = 30/467 (6%)
 Frame = -3

Query: 2020 KKKTEPAIICNRDPRLLDR---NLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVF 1850
            ++ TEPAI+  RD RL D      D+F +GM KY   A  +    D+D ++++   D VF
Sbjct: 49   ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEVFEDALDRVF 104

Query: 1849 -DLPGGISQRCHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGL 1673
             ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R  G +GK     G 
Sbjct: 105  LEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGASGKSWLFAGA 161

Query: 1672 PGCY------TLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRL 1511
            PG +       L  E+   + V     L E     ++G+D  KDE++  SK+Y + KTRL
Sbjct: 162  PGDWHIVPGSLLANEMHK-KEVAPSRGLFEP----LIGIDFPKDEKVDSSKVYIKPKTRL 216

Query: 1510 FTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNG 1331
            FTILP++YN LVRKYF S V+ +M  HN IP KVGI+ L  +W+IL  ++ +KGTNWFNG
Sbjct: 217  FTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTNWFNG 276

Query: 1330 DYSRFDGVTPRCLLIEIARRITNVYGD------DQGNKRLHLMLA-------ATTRLGIA 1190
            DYSRFDG+TPR +L  I +RI   Y +         N  ++  LA       A+TR G+ 
Sbjct: 277  DYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMASTRYGLT 336

Query: 1189 GRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCVELAV 1031
                + V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F   V  A 
Sbjct: 337  NGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYAT 396

Query: 1030 VGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCF 851
             GDDNLVSV       FNL  ++  L   G TLK+G+DKN+E L  F P EK DFLKR F
Sbjct: 397  YGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKF 456

Query: 850  KAYGDRYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLRELFH 710
              Y    +APL  ++++E LHW+R+         +         LFH
Sbjct: 457  VHYQGHVVAPLNPVNITERLHWIRKGLGEADATLENCSSAAFEALFH 503


>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
          Length = 2223

 Score =  288 bits (736), Expect = 3e-74
 Identities = 203/569 (35%), Positives = 304/569 (53%), Gaps = 24/569 (4%)
 Frame = -3

Query: 2068 IRKSSISADLELLTGEKKKTEPAIICNRDPRLLDRNLDIFKKGMLKYKAVAADMSPVTDQ 1889
            +RKS I   +  + G    TEP+I+ + D R      D + KG+ K+   A      T +
Sbjct: 1165 LRKSEIFDAMTKVLGPHS-TEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223

Query: 1888 ---DTKIWDLTWDSV-FDLPGGISQRCHLLSEDENLNGVVGDNEYRGMVVSTSEGWPEVL 1721
                    DL  + V  D+PGG   +  + SE E LNG+ G+  Y  M +ST+ G+P  L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280

Query: 1720 NRTNGEAGKER--FLLGLPGCYTLNRELPMYQRVVDMEE-LCETTIPCIVGLDTAKDERL 1550
            +    E GK +  +L G PG Y L+RE P++   ++++E + +  I  IV  + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336

Query: 1549 PLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILG 1370
            PL KIYQ  KTRLFTILP  YN LVRKYF  F A LM+ HN +P KVGINP G +WT+L 
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396

Query: 1369 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGDDQGNK----RLHLMLAATTR 1202
            K         F+ DYS FDG  P  +       +   YGD  G++    R  L++ A+  
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456

Query: 1201 LGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 1052
            L + G   +RV GG+PSGF+LTV+ NSL+N F +R+++E +          M  +   FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516

Query: 1051 DCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELP-DFNPPEK 875
            + + +A+ GDDNLV+V      +++L  ++  L+     +K+G DKN++     F P  +
Sbjct: 1517 E-LFIAIYGDDNLVAVPLH-LRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574

Query: 874  CDFLKRCFKAYG-DRYLAPLAWMSLSESLHWVRETNTSNPV-ATQTNVEGFLRELFHYGD 701
              FL R F+ +    Y APL W+S+ E L W+R T  + P+ A   N+EG LRE + +G 
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633

Query: 700  KQLYCKWRRDLLDLCAKNRVPHPTSYSFEELERSWLSGKAVASFFQKVEPEVVVIRNAAS 521
            K ++  +R  ++ +  + R+P  T   FEELER W+S     +    VEP    + +   
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLS--- 1690

Query: 520  DIAPNVHIVPVKKCLEWRSDEVPLLVWCG 434
               P V  + V++     ++ VP + +CG
Sbjct: 1691 --LPTVEQLTVEQYSREINEFVPGVHFCG 1717



 Score = 82.8 bits (203), Expect = 2e-12
 Identities = 88/353 (24%), Positives = 138/353 (39%), Gaps = 10/353 (2%)
 Frame = -3

Query: 4345 KDKADRLILQMDSRKVPGAYITHFNNLLQALDRALVECQQALSVGKWRKTPACIWLYGDS 4166
            KDKA     +     V       FN  +  LD+ L + Q    VG++R  P C+ LYG  
Sbjct: 344  KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403

Query: 4165 HVGKSVCSQYXXXXXXXXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 3986
              GK++   +             T R++S +  D +WS Y +Q AVL DDFG + +  + 
Sbjct: 404  GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463

Query: 3985 DEA--EIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKKAFENR 3812
            ++   + I              +E KG T  TS ++F+T+NQA       V    A + R
Sbjct: 464  NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522

Query: 3811 RLILAEVT---AVDGGRYR--DRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSRHH 3647
            R +L EV     +D           FT+    +P+ R D      Y + L       R+H
Sbjct: 523  RNLLIEVERHGPIDETCETPVQNITFTVRDPLDPHRRIDGLSDKTYLEILDIIEEACRNH 582

Query: 3646 FSEQMDLRDAPHTQIYTAADQIAAEAEEGFKTAGIEIPFCLLKSLSGNQLTYFSEELYKE 3467
            +++   L+                         GIE         S ++LT   + L   
Sbjct: 583  WAKDAWLKTF---------------------GKGIERKLQAQVDTSDDELTDSDDPLMPP 621

Query: 3466 VTETLAPEDADIIRARLDPGVITQRFQMLLPKAAY---VNLKNHFSLGTDPFE 3317
                    D  I R      +I++ F++   + AY   +NL+N F +GT P E
Sbjct: 622  TRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670


>dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  257 bits (656), Expect = 6e-65
 Identities = 170/461 (36%), Positives = 247/461 (53%), Gaps = 14/461 (3%)
 Frame = -3

Query: 2005 PAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVFDLPGG 1835
            P+I+ N DPRL      + D FK G+LKYK       P+   D K+     + +      
Sbjct: 1202 PSILSNEDPRLEVSGQTDYDPFKAGILKYK------DPMGVLDNKLLVEVCEEIEQSWLD 1255

Query: 1834 ISQRCHLLSE---DENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGC 1664
              +      E   ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G    
Sbjct: 1256 CKEEGETFEEVSLEQAINGVKDVDYMDRIPLATSEGFPHILSRAHGEKGKIRFVEGDSEE 1315

Query: 1663 YTLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYN 1484
              L     + + +  ME   E  +P ++G++  KDE+LP  KI+++ KTR F+ILPMEYN
Sbjct: 1316 MMLIPGTSVSEALDIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYN 1375

Query: 1483 YLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVT 1304
             LVR+ F +FV  +M+  N +P +VGINP G +WT L  R+  KG N    DYS FDG+ 
Sbjct: 1376 LLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLL 1435

Query: 1303 PRCLLIEIARRITNVYGDDQGNKRL--HLMLAATTRLGIAGRGWYRVSGGIPSGFALTVI 1130
             + ++  ++  I N  G ++ +KR   HL++A  +R  I     ++V  GIPSGF LTVI
Sbjct: 1436 SKQVMKAMSDMINNFCGGNESSKRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLTVI 1495

Query: 1129 VNSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKQEAAAYFNLRT 968
             NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV +    YF+ + 
Sbjct: 1496 CNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKR 1555

Query: 967  LSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLH 788
            L  FL     T+ DG DK    L  F   E CDFLKR FK  G  + AP    SL   LH
Sbjct: 1556 LKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLH 1614

Query: 787  WVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWRRDLL 665
            +V   N     A +TN+   LRELF + DK    + RR  L
Sbjct: 1615 YVNANNLEKHEAYKTNLVTVLRELFMW-DKNECAELRRKAL 1654



 Score = 79.0 bits (193), Expect = 3e-11
 Identities = 85/346 (24%), Positives = 142/346 (41%), Gaps = 10/346 (2%)
 Frame = -3

Query: 4642 LLCPLSLFGVSTTLSCAKDLITIQGGQDA-AGRFFQDLVGGTQEVFYTLTGSKSEFLDYI 4466
            + C  +L  +  T      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKIFGMESRFLRDA 379

Query: 4465 YATVGVDFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKADRL--ILQMDSRKVPG 4292
                  D  +W  ++ E   +     +    + +K   + K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPV 439

Query: 4291 AYITHFNNLLQALDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXXXXXX 4118
               T    + +++++ L E  CQ    V   RK P  ++ YG+S  GK++          
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 4117 XXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3938
                  +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3937 XXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKKAFENRRLILAEVTAVDGGRYRDR 3758
                +E KG     S F+F ++N    +P + +   +AF NRR +L  V  +D  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3757 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYAVNQSRHHFSEQ 3635
            + FT +Q  +    D+   V+      Y     Y + +   H SEQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHESEQ 657


>ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt virus 1]
          Length = 699

 Score =  254 bits (650), Expect = 3e-64
 Identities = 172/497 (34%), Positives = 258/497 (51%), Gaps = 13/497 (2%)
 Frame = -3

Query: 2116 GLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLL---DRNLDIFK 1946
            G++SP         +   ++ I   L    G+     P+I+   D RL    + + D F 
Sbjct: 24   GIISPEHTVGSGGKTSFLETPIEWQLNRPCGKI----PSILVKGDVRLAGTENADYDPFA 79

Query: 1945 KGMLKYKAVAADMSPV-TDQDTKIWDLTWDSVFDLPGGISQRCHLLSEDENLNGVVGDNE 1769
             GM KY   A    P   D+  +    TW    D           +  +  LNG+     
Sbjct: 80   VGMTKYAKEAGPFEPNGLDRVCESIAETWHDASD-----GFEFGPVDLEAALNGIENMEY 134

Query: 1768 YRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCYTLNRELPMYQRVVDM---EELCET 1598
            +  +V+STSEG+P  L+R  GE GK R++ G PG    N E+   + + D+   EE+ +T
Sbjct: 135  FDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPG----NLEITDERILADIHWFEEISKT 190

Query: 1597 TIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIP 1418
             +P +  ++  KDERLP+ K+ +E K+RLFT+LPM YN  +RK F +FV  +MK  + +P
Sbjct: 191  QVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP 250

Query: 1417 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGDD--Q 1244
             +VGINP    W  +  R+  KG +    DYSRFDG  P+C++++IA   +N+ G+   +
Sbjct: 251  CQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAE 310

Query: 1243 GNKRLHLMLAATTRLGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS 1064
              +  +LMLA  +R  I GR  YRV  GIPSGF LTVIVNS++N  L+++++     + S
Sbjct: 311  REQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETES 370

Query: 1063 LF---FSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPD 893
            L    F   V + V GDDNL+SV +  ++ FN   L  F+ N G  + DG DK K  + +
Sbjct: 371  LIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGI-E 429

Query: 892  FNPPEKCDFLKRCFKAYGD-RYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLREL 716
            F   E CDFLKR FK   D  +   +A   L   LH+V+        A  +N    LREL
Sbjct: 430  FRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILREL 489

Query: 715  FHYGDKQLYCKWRRDLL 665
            +  G  +    +RR+++
Sbjct: 490  W-LGSPEKAAAFRREVI 505


>gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]
          Length = 709

 Score =  254 bits (650), Expect = 3e-64
 Identities = 168/461 (36%), Positives = 248/461 (53%), Gaps = 14/461 (3%)
 Frame = -3

Query: 2005 PAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVFDLPGG 1835
            P+I+ + DPRL      + D FK G+LKYK       P+   D K+     + +      
Sbjct: 58   PSILSSDDPRLEVSGHTDYDPFKAGILKYK------DPMGVVDNKLLIEVCEEIEQSWLD 111

Query: 1834 ISQRCHLLSE---DENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGC 1664
              +      E   ++ +NGV   +    + ++TSEG+P +L+R++GE GK RF+ G    
Sbjct: 112  CKEEGETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDSEA 171

Query: 1663 YTLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYN 1484
              L     + + +  ME   E  +P ++G++  KDE+LP  KI+++ KTR F+ILPMEYN
Sbjct: 172  MMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYN 231

Query: 1483 YLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVT 1304
             LVR+ F +FV  +M+  N +P +VGINP G +WT L  R+  KG N    DYS FDG+ 
Sbjct: 232  LLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLL 291

Query: 1303 PRCLLIEIARRITNVYGDDQGNKRL--HLMLAATTRLGIAGRGWYRVSGGIPSGFALTVI 1130
             + ++  ++  I +  G  + +KR   HL++A  +R  I     ++V  GIPSGF LTVI
Sbjct: 292  SKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLTVI 351

Query: 1129 VNSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKQEAAAYFNLRT 968
             NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV +    YF+ + 
Sbjct: 352  CNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKR 411

Query: 967  LSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLH 788
            L  FL     T+ DG DK    L  F   E CDFLKR FK  G  + AP    SL   LH
Sbjct: 412  LKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLH 470

Query: 787  WVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWRRDLL 665
            +V   N     A +TN+   LRELF + DK+   + RR  L
Sbjct: 471  YVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKAL 510


>ref|NP_945134.1| polyprotein [Broad bean wilt virus 1]
            gi|75555028|sp|Q76L40.1|POL1_BBWVS RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B;
            Contains: RecName: Full=Protease cofactor; Contains:
            RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|38044071|dbj|BAD00183.1| polyprotein [Broad
            bean wilt virus 1]
          Length = 1842

 Score =  254 bits (650), Expect = 3e-64
 Identities = 172/497 (34%), Positives = 258/497 (51%), Gaps = 13/497 (2%)
 Frame = -3

Query: 2116 GLLSPSEAPRQATSSEIRKSSISADLELLTGEKKKTEPAIICNRDPRLL---DRNLDIFK 1946
            G++SP         +   ++ I   L    G+     P+I+   D RL    + + D F 
Sbjct: 1167 GIISPEHTVGSGGKTSFLETPIEWQLNRPCGKI----PSILVKGDVRLAGTENADYDPFA 1222

Query: 1945 KGMLKYKAVAADMSPV-TDQDTKIWDLTWDSVFDLPGGISQRCHLLSEDENLNGVVGDNE 1769
             GM KY   A    P   D+  +    TW    D           +  +  LNG+     
Sbjct: 1223 VGMTKYAKEAGPFEPNGLDRVCESIAETWHDASD-----GFEFGPVDLEAALNGIENMEY 1277

Query: 1768 YRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGCYTLNRELPMYQRVVDM---EELCET 1598
            +  +V+STSEG+P  L+R  GE GK R++ G PG    N E+   + + D+   EE+ +T
Sbjct: 1278 FDALVLSTSEGYPYRLDRKPGEKGKARYVEGEPG----NLEITDERILADIHWFEEISKT 1333

Query: 1597 TIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIP 1418
             +P +  ++  KDERLP+ K+ +E K+RLFT+LPM YN  +RK F +FV  +MK  + +P
Sbjct: 1334 QVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLP 1393

Query: 1417 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITNVYGDD--Q 1244
             +VGINP    W  +  R+  KG +    DYSRFDG  P+C++++IA   +N+ G+   +
Sbjct: 1394 CQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAE 1453

Query: 1243 GNKRLHLMLAATTRLGIAGRGWYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS 1064
              +  +LMLA  +R  I GR  YRV  GIPSGF LTVIVNS++N  L+++++     + S
Sbjct: 1454 REQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETES 1513

Query: 1063 LF---FSDCVELAVVGDDNLVSVKQEAAAYFNLRTLSAFLRNFGFTLKDGSDKNKEELPD 893
            L    F   V + V GDDNL+SV +  ++ FN   L  F+ N G  + DG DK K  + +
Sbjct: 1514 LIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGI-E 1572

Query: 892  FNPPEKCDFLKRCFKAYGD-RYLAPLAWMSLSESLHWVRETNTSNPVATQTNVEGFLREL 716
            F   E CDFLKR FK   D  +   +A   L   LH+V+        A  +N    LREL
Sbjct: 1573 FRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILREL 1632

Query: 715  FHYGDKQLYCKWRRDLL 665
            +  G  +    +RR+++
Sbjct: 1633 W-LGSPEKAAAFRREVI 1648



 Score = 83.6 bits (205), Expect = 1e-12
 Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 16/317 (5%)
 Frame = -3

Query: 4516 EVFYTLTGSKSEFLDYIYATVGVDFQEWRSE-------VLELTTATPTSIFLGPQERLKR 4358
            E+   + G +S+ L  +   +G +  +W  E       +LE  +     IF    +RL +
Sbjct: 373  EMASKVLGFESQILADLSIILGENVADWLDECDCMLAYLLEFNS-NARDIF----DRLSQ 427

Query: 4357 LRVCKDKADRLILQMDSRKVPGAYITHFNNLLQALDRALVECQQAL---SVGKWRKTPAC 4187
            L + K KA R+ +   + + P   ++    + +ALD+ L E   ++        RKTP  
Sbjct: 428  L-IEKGKAIRMGILRTTHRGPSQVLSL---VTKALDK-LTELHNSVIMSGANSTRKTPFM 482

Query: 4186 IWLYGDSHVGKSVCSQYXXXXXXXXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGA 4007
            ++  G S VGK+   Q              +  V+SRNG D FWS YK Q+ V YDDFGA
Sbjct: 483  LFFTGKSGVGKTSVVQRMAANWLQQEQLG-SNEVYSRNGLDPFWSGYKRQAVVTYDDFGA 541

Query: 4006 VSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKK 3827
            V  G   +EAEII              L+ KG     S  +  ++N     P + VH  +
Sbjct: 542  V-PGSVSNEAEIINVVSSNPHSVMMADLKEKG-MYFDSRLIIASSNFLAANPESGVHDSE 599

Query: 3826 AFENRRLILAEVT-----AVDGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVN 3662
            A+E RR ++ +V+     A D G      R+TL +   P++    F+  +YE+   +  N
Sbjct: 600  AYERRRHVVVQVSLKEDMAYDPGNPCANQRYTLLESKAPFAEKAVFE--SYEELWSHVYN 657

Query: 3661 QSR-HHFSEQMDLRDAP 3614
              + H   E++ L   P
Sbjct: 658  AFKAHEEKEKLFLSSLP 674


>gb|ADZ55760.1| polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  254 bits (650), Expect = 3e-64
 Identities = 169/461 (36%), Positives = 245/461 (53%), Gaps = 14/461 (3%)
 Frame = -3

Query: 2005 PAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVFDLPGG 1835
            P+I+ N DPRL      + D FK G+LKYK       P+   D K+     + +      
Sbjct: 1202 PSILSNEDPRLEVSGQTDYDPFKAGILKYK------DPMGVLDNKLLVEVCEEIEQSWLD 1255

Query: 1834 ISQRCHLLSE---DENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGC 1664
              +      E   ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G    
Sbjct: 1256 CKEEGETFEEVSLEQAINGVKDVDYMDRIPLATSEGFPHILSRAHGEKGKVRFVEGDSEE 1315

Query: 1663 YTLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYN 1484
              L     + + +  ME   E  +P ++G++  KDE+LP  KI+++ KTR F+ILPMEYN
Sbjct: 1316 MMLIPGTSVSEALDIMEAQLEKEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYN 1375

Query: 1483 YLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVT 1304
              VR+ F +FV  +M+  N +P +VGINP G +WT L  R+  KG N    DYS FDG+ 
Sbjct: 1376 LAVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLL 1435

Query: 1303 PRCLLIEIARRITNVYGDDQGNKRL--HLMLAATTRLGIAGRGWYRVSGGIPSGFALTVI 1130
             + ++  ++  I N  G  + +KR   HL++A  +R  I     ++V  GIPSGF LTVI
Sbjct: 1436 SKQVMKAMSDMINNFCGGSESSKRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLTVI 1495

Query: 1129 VNSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKQEAAAYFNLRT 968
             NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV +    YF+ + 
Sbjct: 1496 CNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKR 1555

Query: 967  LSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLH 788
            L  FL     T+ DG DK    L  F   E CDFLKR FK  G    AP    SL   LH
Sbjct: 1556 LKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYLDAPERKKSLWAQLH 1614

Query: 787  WVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWRRDLL 665
            +V   +     AT+TN+   LRELF + DK    + RR  L
Sbjct: 1615 YVNANHLEKHEATRTNLVTVLRELFMW-DKNECAELRRKAL 1654



 Score = 77.4 bits (189), Expect = 9e-11
 Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 10/346 (2%)
 Frame = -3

Query: 4642 LLCPLSLFGVSTTLSCAKDLITIQGGQDA-AGRFFQDLVGGTQEVFYTLTGSKSEFLDYI 4466
            + C  +L  +  T      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 4465 YATVGVDFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKADRL--ILQMDSRKVPG 4292
                  D  +W  ++ E   +     +    + +K   + K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPV 439

Query: 4291 AYITHFNNLLQALDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXXXXXX 4118
               T    + +++++ L E  CQ    V   RK P  ++ YG+S  GK++          
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 4117 XXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3938
                  +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3937 XXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKKAFENRRLILAEVTAVDGGRYRDR 3758
                +E KG     S F+F ++N    +P + +   +AF NRR +L  V  +D  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3757 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYAVNQSRHHFSEQ 3635
            + FT +Q  +    D+   V+      Y     Y + +   H +EQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQ 657


>gb|ACE06773.1| polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  254 bits (650), Expect = 3e-64
 Identities = 168/461 (36%), Positives = 248/461 (53%), Gaps = 14/461 (3%)
 Frame = -3

Query: 2005 PAIICNRDPRLL---DRNLDIFKKGMLKYKAVAADMSPVTDQDTKIWDLTWDSVFDLPGG 1835
            P+I+ + DPRL      + D FK G+LKYK       P+   D K+     + +      
Sbjct: 1202 PSILSSDDPRLEVSGHTDYDPFKAGILKYK------DPMGVLDNKLLIEVCEEIEQSWLD 1255

Query: 1834 ISQRCHLLSE---DENLNGVVGDNEYRGMVVSTSEGWPEVLNRTNGEAGKERFLLGLPGC 1664
              +      E   ++ +NGV   +    + ++TSEG+P +L+R++GE GK RF+ G    
Sbjct: 1256 CKEEGETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDSEA 1315

Query: 1663 YTLNRELPMYQRVVDMEELCETTIPCIVGLDTAKDERLPLSKIYQEVKTRLFTILPMEYN 1484
              L     + + +  ME   E  +P ++G++  KDE+LP  KI+++ KTR F+ILPMEYN
Sbjct: 1316 MMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYN 1375

Query: 1483 YLVRKYFGSFVAELMKLHNCIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVT 1304
             LVR+ F +FV  +M+  N +P +VGINP G +WT L  R+  KG N    DYS FDG+ 
Sbjct: 1376 LLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLL 1435

Query: 1303 PRCLLIEIARRITNVYGDDQGNKRL--HLMLAATTRLGIAGRGWYRVSGGIPSGFALTVI 1130
             + ++  ++  I +  G  + +KR   HL++A  +R  I     ++V  GIPSGF LTVI
Sbjct: 1436 SKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLTVI 1495

Query: 1129 VNSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKQEAAAYFNLRT 968
             NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV +    YF+ + 
Sbjct: 1496 CNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKR 1555

Query: 967  LSAFLRNFGFTLKDGSDKNKEELPDFNPPEKCDFLKRCFKAYGDRYLAPLAWMSLSESLH 788
            L  FL     T+ DG DK    L  F   E CDFLKR FK  G  + AP    SL   LH
Sbjct: 1556 LKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLH 1614

Query: 787  WVRETNTSNPVATQTNVEGFLRELFHYGDKQLYCKWRRDLL 665
            +V   N     A +TN+   LRELF + DK+   + RR  L
Sbjct: 1615 YVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKAL 1654



 Score = 76.3 bits (186), Expect = 2e-10
 Identities = 83/346 (23%), Positives = 142/346 (41%), Gaps = 10/346 (2%)
 Frame = -3

Query: 4642 LLCPLSLFGVSTTLSCAKDLITIQGGQDA-AGRFFQDLVGGTQEVFYTLTGSKSEFLDYI 4466
            + C  +L  +  T      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 4465 YATVGVDFQEWRSEVLELTTATPTSIFLGPQERLKRLRVCKDKADRL--ILQMDSRKVPG 4292
                  D  +W  ++ E   +     +    + +K   + K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQCLIKKGHDMRSKVLKVTSRISPV 439

Query: 4291 AYITHFNNLLQALDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXXXXXX 4118
               T    + +++++ L E  CQ    +   RK P  ++ YG+S  GK++          
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 4117 XXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3938
                  +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3937 XXXXLEAKGNTCCTSDFVFITANQAGLTPAAVVHCKKAFENRRLILAEVTAVDGGRYRDR 3758
                +E KG     S F+F ++N    +P + +   +AF NRR +L  V  +D  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3757 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYAVNQSRHHFSEQ 3635
            + FT +Q  +    D+   V+      Y     Y + +   H +EQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQ 657