BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00029230
         (307 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymeras...    82   6e-14
gb|AAZ03990.1| RNA polymerase beta' chain [Yucca schidigera]           77   2e-12
gb|AFB18558.1| RNA polymerase beta' subunit, partial [Pandanus u...    77   2e-12
gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]      77   3e-12
gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus]          75   9e-12
ref|YP_005087684.1| RNA polymerase beta' subunit (chloroplast) [...    75   9e-12
gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]        75   9e-12
gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]        75   9e-12
gb|AHI87518.1| RNA polymerase beta subunit (chloroplast) [Chiono...    75   1e-11
gb|AGQ55666.1| RNA polymerase beta (chloroplast) [Alstroemeria a...    74   2e-11
gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum]         74   2e-11
gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]            74   2e-11
gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]         74   2e-11
gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion o...    74   2e-11
ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281...    74   2e-11
sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed RNA polymeras...    74   2e-11
ref|YP_008577654.1| RNA polymerase beta' subunit (chloroplast) [...    74   3e-11
gb|AFU96954.1| RpoC1, partial (chloroplast) [Euphronia guianensis]     74   3e-11
ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus co...    74   3e-11
ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arab...    72   3e-11

>sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|5457428|emb|CAB48413.1| RNA polymerase A beta prime
           subunit [Sinapis alba]
          Length = 688

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDFT 177
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDRN +F+
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFS 154


>gb|AAZ03990.1| RNA polymerase beta' chain [Yucca schidigera]
          Length = 693

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 37/42 (88%), Positives = 39/42 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDFT 177
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDR  +F+
Sbjct: 120 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV-FDRYLNFS 160


>gb|AFB18558.1| RNA polymerase beta' subunit, partial [Pandanus utilis]
          Length = 520

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLD+PLKELEGLVYCDV FDR
Sbjct: 96  VTHVWYLKRLPSYIANLLDRPLKELEGLVYCDVXFDR 132


>gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]
          Length = 688

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDR Y
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV-FDRIY 150


>gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus]
          Length = 696

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 36/37 (97%), Positives = 36/37 (97%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDR
Sbjct: 120 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV-FDR 155


>ref|YP_005087684.1| RNA polymerase beta' subunit (chloroplast) [Gossypium raimondii]
           gi|318084641|gb|ADV39113.1| RNA polymerase beta' subunit
           (chloroplast) [Gossypium raimondii]
          Length = 685

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149


>gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]
          Length = 682

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149


>gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]
          Length = 682

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 35/37 (94%), Positives = 35/37 (94%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV F R
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVSFAR 149


>gb|AHI87518.1| RNA polymerase beta subunit (chloroplast) [Chionographis japonica]
          Length = 692

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/50 (74%), Positives = 40/50 (80%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDFTDSK*ETVI 153
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++    SK  T +
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSFARPISKKPTFL 162


>gb|AGQ55666.1| RNA polymerase beta (chloroplast) [Alstroemeria aurea]
          Length = 688

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151


>gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum]
          Length = 694

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDF 180
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD+    N+ F
Sbjct: 120 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDIESYPNFSF 160


>gb|AAZ03989.1| RNA polymerase beta' chain [Typha latifolia]
          Length = 684

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151


>gb|AFB18557.1| RNA polymerase beta' subunit [Kingia australis]
          Length = 683

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151


>gb|AEZ01418.1| RNA polymerase beta (chloroplast) [Japonolirion osense]
          Length = 686

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151


>ref|YP_003433966.1| RNA polymerase beta [Typha latifolia] gi|281371763|gb|ADA63690.1|
           RNA polymerase beta [Typha latifolia]
          Length = 686

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/39 (87%), Positives = 36/39 (92%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNY 186
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV  D ++
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVYLDFSF 151


>sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
          Length = 687

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDF 180
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD+    N+ F
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDIESYPNFSF 153


>ref|YP_008577654.1| RNA polymerase beta' subunit (chloroplast) [Corymbia maculata]
           gi|442568896|gb|AGC59063.1| RNA polymerase beta' subunit
           (chloroplast) [Corymbia maculata]
          Length = 689

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 34/40 (85%), Positives = 35/40 (87%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYD 183
           VTHVWYLKRLPSYIAN+LDKPLKELEGLVYCD  F R  D
Sbjct: 120 VTHVWYLKRLPSYIANILDKPLKELEGLVYCDFSFARPID 159


>gb|AFU96954.1| RpoC1, partial (chloroplast) [Euphronia guianensis]
          Length = 731

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 34/37 (91%), Positives = 34/37 (91%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 192
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD  F R
Sbjct: 116 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFGR 152


>ref|YP_005090169.1| rpoC1 gene product (chloroplast) [Ricinus communis]
           gi|339516156|gb|AEJ82546.1| RNA polymerase beta subunit
           [Ricinus communis]
          Length = 654

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 35/42 (83%), Positives = 36/42 (85%)
 Frame = -3

Query: 302 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNYDFT 177
           VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV +     FT
Sbjct: 113 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVKYSIPLFFT 154


>ref|XP_002886863.1| hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp.
            lyrata] gi|297332704|gb|EFH63122.1| hypothetical protein
            ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]
          Length = 1763

 Score = 71.6 bits (174), Expect(2) = 3e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = -3

Query: 302  VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 207
            VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD
Sbjct: 1177 VTHVWYLKRLPSYIANLLDKPLKELEGLVYCD 1208



 Score = 21.9 bits (45), Expect(2) = 3e-11
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 106  ESNMKLRIVG 77
            +SNMKLRIVG
Sbjct: 1208 DSNMKLRIVG 1217