BLASTX nr result
ID: Paeonia23_contig00021561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00021561
(365 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 124 2e-26
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 121 1e-25
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 121 1e-25
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 121 1e-25
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 121 1e-25
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 120 2e-25
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 120 2e-25
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 120 2e-25
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 120 2e-25
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 119 3e-25
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 118 7e-25
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 118 7e-25
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 118 7e-25
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 118 1e-24
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 118 1e-24
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 117 1e-24
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g... 117 1e-24
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 117 2e-24
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 117 2e-24
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 116 3e-24
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 124 bits (310), Expect = 2e-26
Identities = 57/116 (49%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE V+ G+VL D K+AGVG+I+IKM DG +R L +VRH+P L
Sbjct: 248 CTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSL 307
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K+NLIS+S LD GY+ G++KV KG+L++++ D K LY L+G+T+ G V+
Sbjct: 308 KRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQGTTIVGNVA 363
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 121 bits (303), Expect = 1e-25
Identities = 58/111 (52%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+ PH+D+F SYE + +GSV + A +IAGVG+I++KMHDG VR ++ VRHV GLK
Sbjct: 298 TWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLK 357
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCDKI-GGLYFLRGSTVK 334
KNL+SV LD +G KI TE G++KV+KG L++++ +KI LY L G T++
Sbjct: 358 KNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 121 bits (303), Expect = 1e-25
Identities = 58/111 (52%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+ PH+D+F SYE + +GSV + A +IAGVG+I++KMHDG VR ++ VRHV GLK
Sbjct: 298 TWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLK 357
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCDKI-GGLYFLRGSTVK 334
KNL+SV LD +G KI TE G++KV+KG L++++ +KI LY L G T++
Sbjct: 358 KNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 121 bits (303), Expect = 1e-25
Identities = 58/111 (52%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+ PH+D+F SYE + +GSV + A +IAGVG+I++KMHDG VR ++ VRHV GLK
Sbjct: 298 TWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLK 357
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCDKI-GGLYFLRGSTVK 334
KNL+SV LD +G KI TE G++KV+KG L++++ +KI LY L G T++
Sbjct: 358 KNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 121 bits (303), Expect = 1e-25
Identities = 54/116 (46%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 215 CTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNL 274
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 275 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVA 330
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 120 bits (302), Expect = 2e-25
Identities = 54/116 (46%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 272 CTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 331
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 332 KRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 387
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 120 bits (302), Expect = 2e-25
Identities = 53/116 (45%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE+V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 123 CTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 182
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY L+G+T+ G V+
Sbjct: 183 KRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVA 238
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 120 bits (302), Expect = 2e-25
Identities = 53/116 (45%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE+V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 291 CTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 350
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY L+G+T+ G V+
Sbjct: 351 KRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVA 406
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 120 bits (302), Expect = 2e-25
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 2/121 (1%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLT-ADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPG 178
C+ HIC ++D+FSSY+ V++G V+ D +I G+GS++IK HDGM R LK+VRH+PG
Sbjct: 298 CSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPG 357
Query: 179 LKKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVSELL 355
+ +NLIS+S LD+ GYK + GGVVKV KG+L+ + D LY LRGST+ G V+
Sbjct: 358 MARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAA 417
Query: 356 V 358
V
Sbjct: 418 V 418
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 119 bits (299), Expect = 3e-25
Identities = 57/111 (51%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+ PH+D+F SYE + +GSV + A +IAGVG+I++KMHDG VR ++ VRHV GLK
Sbjct: 298 TWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLK 357
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCDKI-GGLYFLRGSTVK 334
KNL+SV LD +G KI +E G++KV+KG L++++ +KI LY L G T++
Sbjct: 358 KNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 118 bits (296), Expect = 7e-25
Identities = 53/116 (45%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
C H+CP++D+F++YE V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 513 CIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 572
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 573 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 628
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 118 bits (296), Expect = 7e-25
Identities = 52/116 (44%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE+V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 306 CTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 365
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ K LY L+G+T+ G V+
Sbjct: 366 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVA 421
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 118 bits (296), Expect = 7e-25
Identities = 53/116 (45%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
C H+CP++D+F++YE V+ G+VL D ++AG+G+++IKM DG +R L +VRH+P L
Sbjct: 306 CIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNL 365
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 366 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 421
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 118 bits (295), Expect = 1e-24
Identities = 53/116 (45%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE V+ G+VL D ++AG+G ++IKM DG + L +VRH+P L
Sbjct: 138 CTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNL 197
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 198 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 253
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 118 bits (295), Expect = 1e-24
Identities = 53/116 (45%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGL 181
CT H+CP++D+F++YE V+ G+VL D ++AG+G ++IKM DG + L +VRH+P L
Sbjct: 138 CTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNL 197
Query: 182 KKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
K++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 198 KRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 253
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 117 bits (294), Expect = 1e-24
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 2/121 (1%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLT-ADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPG 178
C+ HIC ++D+FSSY+ V++G V+ D +I G+GS++IK HDGM R LK+VR++PG
Sbjct: 248 CSFHICINRDWFSSYKSVQNGDVVRMGDDNPHEIVGIGSVQIKTHDGMTRTLKDVRYIPG 307
Query: 179 LKKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVSELL 355
+ +NLIS+S LD+ GYK GGVVKV KG+L+ + D LY LRGST+ G V+
Sbjct: 308 MARNLISLSTLDAEGYKYSGLGGVVKVSKGSLVYMISDMNSANLYVLRGSTLHGSVTAAA 367
Query: 356 V 358
V
Sbjct: 368 V 368
>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
Japonica Group]
Length = 759
Score = 117 bits (294), Expect = 1e-24
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLT-ADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPG 178
C+ HIC ++D+FSSY+ V++G V+ D I G+GS++IK HDGM R LK+ RH+PG
Sbjct: 227 CSFHICINRDWFSSYKSVQNGDVVRMGDDNPRGIMGIGSVQIKTHDGMTRTLKDARHIPG 286
Query: 179 LKKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVSELL 355
+ +NLIS+S LDS GYK GGVVKV KG+L+ + D LY LRGST+ G V+
Sbjct: 287 MARNLISLSTLDSEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAA 346
Query: 356 V 358
V
Sbjct: 347 V 347
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 117 bits (292), Expect = 2e-24
Identities = 52/115 (45%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+CP++D+F++YE ++ G+VL D ++AG+G+++IKM DG +R L +VRH+P LK
Sbjct: 342 TYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLK 401
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 402 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 456
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 117 bits (292), Expect = 2e-24
Identities = 52/115 (45%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Frame = +2
Query: 5 TTHICPHKDYFSSYELVEDGSVLTADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPGLK 184
T H+CP++D+F++YE ++ G+VL D ++AG+G+++IKM DG +R L +VRH+P LK
Sbjct: 342 TYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLK 401
Query: 185 KNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVS 346
++LIS+ LD GYK G++KV KG+L++++ D K LY LRG+T+ G V+
Sbjct: 402 RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 456
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 116 bits (291), Expect = 3e-24
Identities = 60/121 (49%), Positives = 83/121 (68%), Gaps = 2/121 (1%)
Frame = +2
Query: 2 CTTHICPHKDYFSSYELVEDGSVLT-ADGKAFKIAGVGSIKIKMHDGMVRILKNVRHVPG 178
C+ HIC ++D+FSSY+ V++ V+ D +I G+GS++IK HDGM R LK+VRH+PG
Sbjct: 298 CSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPG 357
Query: 179 LKKNLISVSVLDSMGYKIVTEGGVVKVMKGALIILRCD-KIGGLYFLRGSTVKGGVSELL 355
+ +NLIS+S LD+ GYK GGVVKV KG+L+ + D LY LRGST+ G V+
Sbjct: 358 MARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAA 417
Query: 356 V 358
V
Sbjct: 418 V 418