BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00017938
         (569 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   310   2e-82
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   307   1e-81
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   303   3e-80
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...   302   4e-80
gb|ACQ99762.1| RNA polymerase IV, partial [Heliosperma veselskyi...   301   8e-80
gb|ACQ99761.1| RNA polymerase IV, partial [Heliosperma pusillum]      301   8e-80
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   301   8e-80
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   301   1e-79
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   301   1e-79
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   301   1e-79
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   300   2e-79
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   300   2e-79
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob...   300   2e-79
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   300   2e-79
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              298   5e-79
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   297   1e-78
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...   296   2e-78
gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]    295   6e-78
gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]    295   7e-78
gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]    292   4e-77

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  310 bits (794), Expect = 2e-82
 Identities = 154/197 (78%), Positives = 169/197 (85%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVENL K+++FKG D+TFQSLLDKG+         EDC TAWGIKYL ++   +P  
Sbjct: 649  PLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYL-LKGHDDPPV 707

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIP+ANHD+ARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 708  KYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 767

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTMI+DCLGKP        + P+PE+FNGQ AIVAVNVHLGYNQEDSLVMN
Sbjct: 768  LYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMN 827

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEHIRSY
Sbjct: 828  RASLERGMFRSEHIRSY 844


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score =  307 bits (786), Expect = 1e-81
 Identities = 150/189 (79%), Positives = 165/189 (87%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVENL KI++FKGG+Y F SLLDKG+         EDCCTAWGIK+L  + +G    
Sbjct: 642  PLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPM 701

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KY+HCELDMSFLLGLSCGIIPFANHD+ARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 702  KYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQ 761

Query: 208  LYYPQRPLFRTMIADCLGKPLSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGM 29
            L+YPQRPLFRTMI+DCL   + PKPE FNGQNAIVAVNVHLGYNQEDSLVMNR+SLERGM
Sbjct: 762  LHYPQRPLFRTMISDCL---VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 818

Query: 28   FRSEHIRSY 2
            FRSEHIRSY
Sbjct: 819  FRSEHIRSY 827


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  303 bits (775), Expect = 3e-80
 Identities = 150/197 (76%), Positives = 163/197 (82%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV+NL KI +FKGG+ TFQSLLDKG+         EDC TAWGIK+L     G    
Sbjct: 653  PLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSL 712

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQ++KHSQQAIGF TTNPNIRVDTLSHQ
Sbjct: 713  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQ 772

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRT+ +DCLGKP        + PKPE +NGQNAIVAVNVHLGYNQEDSLVMN
Sbjct: 773  LYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMN 832

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEHIRSY
Sbjct: 833  RASLERGMFRSEHIRSY 849


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  302 bits (774), Expect = 4e-80
 Identities = 145/194 (74%), Positives = 166/194 (85%), Gaps = 5/194 (2%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVENL K+++ KGG  +FQ  LD G+         EDC TAWGIKYLFME+KG    
Sbjct: 653  PLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEEEEDCSTAWGIKYLFMEDKGKSAT 712

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            K+THCELDMSFLLGLSCGIIP+ANHD+ARRVLYQ++KHSQQAIGFSTTNPN+RVDTLSHQ
Sbjct: 713  KFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQKHSQQAIGFSTTNPNLRVDTLSHQ 772

Query: 208  LYYPQRPLFRTMIADCLGKP-----LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMNRSS 44
            L+YPQRPLF+TM +DCLGKP     + PKPE++NGQNAIVAVNVHLG+NQEDS+VMNR+S
Sbjct: 773  LHYPQRPLFQTMTSDCLGKPGRHNRIVPKPEYYNGQNAIVAVNVHLGFNQEDSIVMNRAS 832

Query: 43   LERGMFRSEHIRSY 2
            LERGMFRSEHIRSY
Sbjct: 833  LERGMFRSEHIRSY 846


>gb|ACQ99762.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
          Length = 474

 Score =  301 bits (771), Expect = 8e-80
 Identities = 148/197 (75%), Positives = 165/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVVENL KI+  KG DY+FQ+LLDKG+         EDCCTAW IKYLFM +KG    
Sbjct: 91  PLLVVENLRKIKLLKGDDYSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLE 150

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLG+SCGIIPFANHD+ARRVLYQSEKHS QAIG+++TNPNIR+DTLSHQ
Sbjct: 151 KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQ 210

Query: 208 LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           +YYPQRPLFR++IAD LGKP          PK EFFNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 211 MYYPQRPLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMN 270

Query: 52  RSSLERGMFRSEHIRSY 2
           R+SLERGMFR+EHIRSY
Sbjct: 271 RASLERGMFRTEHIRSY 287


>gb|ACQ99761.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 443

 Score =  301 bits (771), Expect = 8e-80
 Identities = 148/197 (75%), Positives = 165/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVVENL KI+  KG DY+FQ+LLDKG+         EDCCTAW IKYLFM +KG    
Sbjct: 59  PLLVVENLRKIKLLKGDDYSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLE 118

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLG+SCGIIPFANHD+ARRVLYQSEKHS QAIG+++TNPNIR+DTLSHQ
Sbjct: 119 KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQ 178

Query: 208 LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           +YYPQRPLFR++IAD LGKP          PK EFFNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 179 MYYPQRPLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMN 238

Query: 52  RSSLERGMFRSEHIRSY 2
           R+SLERGMFR+EHIRSY
Sbjct: 239 RASLERGMFRTEHIRSY 255


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  301 bits (771), Expect = 8e-80
 Identities = 150/197 (76%), Positives = 164/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVENL KI++ KGGDY+FQSLLDKGV         EDC TAWGI YLFME +     
Sbjct: 469  PLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATV 528

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLS  IIPFANHD+ARRVLYQSEKHSQQA+GF+TTNPNIRVDT +HQ
Sbjct: 529  KYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQ 588

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM++DCLGKP        + P+ E+FNGQ AIVAVNVHLGYNQEDSLVMN
Sbjct: 589  LYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMN 648

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEHIRSY
Sbjct: 649  RASLERGMFRSEHIRSY 665


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score =  301 bits (770), Expect = 1e-79
 Identities = 148/197 (75%), Positives = 163/197 (82%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV NL KI++ KGGDY FQSLLD G+         EDC TAWG++Y+   +K NP A
Sbjct: 668  PLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKADKENPPA 727

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQSEKHSQQAIGFST NPN RVDT +HQ
Sbjct: 728  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQ 787

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM+AD LGKP        + P+PE+FNGQ AIVAVNVHLGYNQEDSLVMN
Sbjct: 788  LYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMN 847

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEH+RSY
Sbjct: 848  RASLERGMFRSEHVRSY 864


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score =  301 bits (770), Expect = 1e-79
 Identities = 148/197 (75%), Positives = 163/197 (82%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV NL KI++ KGGDY FQSLLD G+         EDC TAWG++Y+   +K NP A
Sbjct: 668  PLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPA 727

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQSEKHSQQAIGFST NPN RVDT +HQ
Sbjct: 728  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQ 787

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM+AD LGKP        + P+PE+FNGQ AIVAVNVHLGYNQEDSLVMN
Sbjct: 788  LYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMN 847

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEH+RSY
Sbjct: 848  RASLERGMFRSEHVRSY 864


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  301 bits (770), Expect = 1e-79
 Identities = 148/197 (75%), Positives = 163/197 (82%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV NL KI++ KGGDY FQSLLD G+         EDC TAWG++Y+   +K NP A
Sbjct: 662  PLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADKENPPA 721

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQSEKHSQQAIGFST NPN RVDT +HQ
Sbjct: 722  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVDTNTHQ 781

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM+AD LGKP        + P+PE+FNGQ AIVAVNVHLGYNQEDSLVMN
Sbjct: 782  LYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQEDSLVMN 841

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEH+RSY
Sbjct: 842  RASLERGMFRSEHVRSY 858


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  300 bits (767), Expect = 2e-79
 Identities = 146/195 (74%), Positives = 164/195 (84%), Gaps = 6/195 (3%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVEN+ KI+S +G +YTFQ+LLD G+         EDCCTAWGIKYL  + +     
Sbjct: 644  PLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI 703

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            K+THCELDMSFLLGLSCGIIPFANHD+ARRVLYQS+KHS QAIGF TTNP+IRVDTLSHQ
Sbjct: 704  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 763

Query: 208  LYYPQRPLFRTMIADCLGKP------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMNRS 47
            L+YPQRPLFRTMI+DCLGKP      + P+PE +NGQNAIVAVNVHLGYNQEDSLVMNR+
Sbjct: 764  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 823

Query: 46   SLERGMFRSEHIRSY 2
            SLERGMFRSEHIRSY
Sbjct: 824  SLERGMFRSEHIRSY 838


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
            gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
            isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  300 bits (767), Expect = 2e-79
 Identities = 149/197 (75%), Positives = 165/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV+NL +I++FKG +YTFQ+LL+ G+         EDC TAW IKYL  + +G    
Sbjct: 634  PLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPV 693

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 694  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQ 753

Query: 208  LYYPQRPLFRTMIADCLGK---PLS-----PKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM +DCLGK   PL      PKPE +NGQNAIVAVNVHLGYNQEDSLVMN
Sbjct: 754  LYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMN 813

Query: 52   RSSLERGMFRSEHIRSY 2
            RSSLERGMFRSEH+RSY
Sbjct: 814  RSSLERGMFRSEHVRSY 830


>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
           gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
           isoform 2 [Theobroma cacao]
          Length = 961

 Score =  300 bits (767), Expect = 2e-79
 Identities = 149/197 (75%), Positives = 165/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVV+NL +I++FKG +YTFQ+LL+ G+         EDC TAW IKYL  + +G    
Sbjct: 407 PLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPV 466

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 467 KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQ 526

Query: 208 LYYPQRPLFRTMIADCLGK---PLS-----PKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           LYYPQRPLFRTM +DCLGK   PL      PKPE +NGQNAIVAVNVHLGYNQEDSLVMN
Sbjct: 527 LYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMN 586

Query: 52  RSSLERGMFRSEHIRSY 2
           RSSLERGMFRSEH+RSY
Sbjct: 587 RSSLERGMFRSEHVRSY 603


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
            gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
            isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  300 bits (767), Expect = 2e-79
 Identities = 149/197 (75%), Positives = 165/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV+NL +I++FKG +YTFQ+LL+ G+         EDC TAW IKYL  + +G    
Sbjct: 634  PLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAWSIKYLLTDVEGKQPV 693

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQ++KHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 694  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQ 753

Query: 208  LYYPQRPLFRTMIADCLGK---PLS-----PKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            LYYPQRPLFRTM +DCLGK   PL      PKPE +NGQNAIVAVNVHLGYNQEDSLVMN
Sbjct: 754  LYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAVNVHLGYNQEDSLVMN 813

Query: 52   RSSLERGMFRSEHIRSY 2
            RSSLERGMFRSEH+RSY
Sbjct: 814  RSSLERGMFRSEHVRSY 830


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  298 bits (764), Expect = 5e-79
 Identities = 149/189 (78%), Positives = 163/189 (86%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVVENL K+++FKG D+TFQSLLDKG+         EDC TAWGIKYL ++   +P  
Sbjct: 685  PLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYL-LKGHDDPPV 743

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIP+ANHD+ARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ
Sbjct: 744  KYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 803

Query: 208  LYYPQRPLFRTMIADCLGKPLSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMNRSSLERGM 29
            LYYPQRPLFRTMI+D       P+PE+FNGQ AIVAVNVHLGYNQEDSLVMNR+SLERGM
Sbjct: 804  LYYPQRPLFRTMISDL------PRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGM 857

Query: 28   FRSEHIRSY 2
            FRSEHIRSY
Sbjct: 858  FRSEHIRSY 866


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score =  297 bits (761), Expect = 1e-78
 Identities = 149/197 (75%), Positives = 164/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV+ L KI++ KG  +TFQ  LDKG+         EDC TAW IKYLFMEE+G+   
Sbjct: 652  PLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDCRTAWAIKYLFMEEQGSV-V 710

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSCGIIPFANHD+ARRVLYQS+KHSQQAIG+STTNPN+RVDTLSH 
Sbjct: 711  KYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQAIGYSTTNPNLRVDTLSHN 770

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            L+YPQRPLFRTMIAD LGKP          PKPE+FNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 771  LHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNAIVAVNVHLGYNQEDSIVMN 830

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SLERGMFRSEHIRSY
Sbjct: 831  RASLERGMFRSEHIRSY 847


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score =  296 bits (759), Expect = 2e-78
 Identities = 147/197 (74%), Positives = 163/197 (82%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568  PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
            PLLVV NL KI+ FK   Y+FQSLLDKGV         EDCCTAWG++YLF +E G    
Sbjct: 656  PLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKE-GKRSV 714

Query: 388  KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
            KYTHCELDMSFLLGLSC ++PFANHD+ARRVLYQS+KHS QAIGFSTTNPNIRVDTLSHQ
Sbjct: 715  KYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQ 774

Query: 208  LYYPQRPLFRTMIADCLGKP--------LSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
            L+YPQ+PLFRTM +DCLGKP        + PK EF+NGQNAIVAVNVHLGYNQEDSLVMN
Sbjct: 775  LHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMN 834

Query: 52   RSSLERGMFRSEHIRSY 2
            R+SL+RGMFRSEHIRSY
Sbjct: 835  RASLQRGMFRSEHIRSY 851


>gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  295 bits (755), Expect = 6e-78
 Identities = 145/197 (73%), Positives = 164/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVVENL KI+  KG D++FQ+LLDKG+         EDCCTAW IKYLF+ +KG    
Sbjct: 91  PLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFVGDKGKGLE 150

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLG+SCGIIPFANHD+ARRVLYQSEKHS QAIG+++TNPNIR+DTLSHQ
Sbjct: 151 KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQ 210

Query: 208 LYYPQRPLFRTMIADCLGK--------PLSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           +YYPQRPLFR++IAD LGK           PK EFFNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 211 MYYPQRPLFRSVIADALGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMN 270

Query: 52  RSSLERGMFRSEHIRSY 2
           R+SLERGMFR+EHIRSY
Sbjct: 271 RASLERGMFRTEHIRSY 287


>gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  295 bits (754), Expect = 7e-78
 Identities = 144/197 (73%), Positives = 164/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVVENL KI+  KG D++FQ+LLDKG+         EDCCTAW IKYLF+ +KG    
Sbjct: 91  PLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFVGDKGKGLE 150

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLG+SCGIIPFANHD+ARRVLYQSEKHS QAIG+++TNPNIR+DTLSHQ
Sbjct: 151 KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQ 210

Query: 208 LYYPQRPLFRTMIADCLGK--------PLSPKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           +YYP+RPLFR++IAD LGK           PK EFFNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 211 MYYPZRPLFRSVIADALGKSDYTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMN 270

Query: 52  RSSLERGMFRSEHIRSY 2
           R+SLERGMFR+EHIRSY
Sbjct: 271 RASLERGMFRTEHIRSY 287


>gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 475

 Score =  292 bits (748), Expect = 4e-77
 Identities = 147/197 (74%), Positives = 164/197 (83%), Gaps = 8/197 (4%)
 Frame = -2

Query: 568 PLLVVENLPKIRSFKGGDYTFQSLLDKGVXXXXXXXXXEDCCTAWGIKYLFMEEKGNPQA 389
           PLLVVENL KI+  KG +++FQ+LLDKG+         EDC TAW IKYLF  EKG    
Sbjct: 91  PLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLE 150

Query: 388 KYTHCELDMSFLLGLSCGIIPFANHDNARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQ 209
           KYTHCELDMSFLLG+SCGIIPFANHD+ARRVLYQSEKHS QAIG++TTNPNIR+DTLSHQ
Sbjct: 151 KYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQ 210

Query: 208 LYYPQRPLFRTMIADCLGK---PLS-----PKPEFFNGQNAIVAVNVHLGYNQEDSLVMN 53
           +YYPQRPLFR++IAD LGK   PL      PK EFFNGQNAIVAVNVHLGYNQEDS+VMN
Sbjct: 211 MYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAIVAVNVHLGYNQEDSIVMN 270

Query: 52  RSSLERGMFRSEHIRSY 2
           R+SLERGMFR+EHIRSY
Sbjct: 271 RASLERGMFRTEHIRSY 287