BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00016816
         (928 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   324   3e-86
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   319   1e-84
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   319   1e-84
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   318   1e-84
ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   316   7e-84
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   316   1e-83
gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus...   311   2e-82
ref|XP_006848911.1| hypothetical protein AMTR_s00161p00064200 [A...   311   3e-82
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   308   2e-81
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   307   3e-81
ref|XP_007009966.1| Pseudouridine synthase family protein isofor...   306   6e-81
ref|XP_007009965.1| Pseudouridine synthase family protein isofor...   306   6e-81
ref|XP_007009964.1| Pseudouridine synthase family protein isofor...   306   6e-81
ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prun...   304   4e-80
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   302   1e-79
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   302   1e-79
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   300   4e-79
ref|XP_007009963.1| Pseudouridine synthase family protein isofor...   300   5e-79
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   298   2e-78
gb|AAC28992.1| unknown protein [Arabidopsis thaliana]                 298   2e-78

>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464
           isoform 1 [Vitis vinifera]
          Length = 393

 Score =  324 bits (831), Expect = 3e-86
 Identities = 165/249 (66%), Positives = 189/249 (75%), Gaps = 2/249 (0%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQSGQLFIPWIVRDENGNLTLQ 563
           ++  EFNI+FA                     + +  +PQS  L IPWIVRDENGNL +Q
Sbjct: 48  TTSAEFNISFAP--------------------KSKNPKPQSETLLIPWIVRDENGNLRVQ 87

Query: 562 SQPPARFVQAMAFADXXXXXXXXXXXXXKD--AGAQPKHSKAARRFYNENFREPPQRLSK 389
           S PP R++Q MA A                     +PK+SKAARRFYNENFR+PPQRLSK
Sbjct: 88  STPPERYLQDMAKAKALSAKKKKKKEESTARAVAVEPKYSKAARRFYNENFRDPPQRLSK 147

Query: 388 VLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYF 209
           VLAAAGVASRR+SEELIF+GRVTVNGSVCNTPQTRVDP RD+IYVNGNRLPKKLPPKVY 
Sbjct: 148 VLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQTRVDPARDMIYVNGNRLPKKLPPKVYL 207

Query: 208 ALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVT 29
           ALNKPKGYICS+GEKE KSV+CLFD Y+KSW K+NPG+PKPR+FTVGRLDVATTGLII+T
Sbjct: 208 ALNKPKGYICSSGEKESKSVLCLFDDYLKSWNKQNPGVPKPRIFTVGRLDVATTGLIILT 267

Query: 28  NDGDFAQRV 2
           NDGDFAQ++
Sbjct: 268 NDGDFAQKL 276


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  319 bits (817), Expect = 1e-84
 Identities = 180/277 (64%), Positives = 193/277 (69%), Gaps = 18/277 (6%)
 Frame = -1

Query: 778 CFCRTRPSFRIF--SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQP--QSG-- 617
           C  RT P  RI   SS  +FNI+FA                   P   +TQQ   +SG  
Sbjct: 26  CIHRTFPRSRITCSSSSLQFNISFAP------------------PKRKKTQQDDFESGEG 67

Query: 616 ---QLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAGAQ----- 461
              QLFIPWIVR E+GNL LQ+ PPAR V  +A A                A A      
Sbjct: 68  SEQQLFIPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGG 127

Query: 460 ----PKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTP 293
               PK SKAARRFYN+NFR+ P+RLSKVLAAAGVASRRSSEELIFQG+VTVNGSVCNTP
Sbjct: 128 PKAAPKLSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTP 187

Query: 292 QTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWG 113
           QTRVDP RDIIYVNG RLPKKLPPKVY ALNKPKGYICSAGEKE KSVM LFD Y+KSW 
Sbjct: 188 QTRVDPARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWD 247

Query: 112 KRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           KRNPGLP+PRLFTVGRLDVATTGLIIVTNDGDFAQ V
Sbjct: 248 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAV 284


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
           gi|557538690|gb|ESR49734.1| hypothetical protein
           CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  319 bits (817), Expect = 1e-84
 Identities = 180/277 (64%), Positives = 193/277 (69%), Gaps = 18/277 (6%)
 Frame = -1

Query: 778 CFCRTRPSFRIF--SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQP--QSG-- 617
           C  RT P  RI   SS  +FNI+FA                   P   +TQQ   +SG  
Sbjct: 76  CIHRTFPRSRITCSSSSLQFNISFAP------------------PKRKKTQQDDFESGEG 117

Query: 616 ---QLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAGAQ----- 461
              QLFIPWIVR E+GNL LQ+ PPAR V  +A A                A A      
Sbjct: 118 SEQQLFIPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGG 177

Query: 460 ----PKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTP 293
               PK SKAARRFYN+NFR+ P+RLSKVLAAAGVASRRSSEELIFQG+VTVNGSVCNTP
Sbjct: 178 PKAAPKLSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTP 237

Query: 292 QTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWG 113
           QTRVDP RDIIYVNG RLPKKLPPKVY ALNKPKGYICSAGEKE KSVM LFD Y+KSW 
Sbjct: 238 QTRVDPARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWD 297

Query: 112 KRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           KRNPGLP+PRLFTVGRLDVATTGLIIVTNDGDFAQ V
Sbjct: 298 KRNPGLPRPRLFTVGRLDVATTGLIIVTNDGDFAQAV 334


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  318 bits (816), Expect = 1e-84
 Identities = 171/265 (64%), Positives = 187/265 (70%), Gaps = 9/265 (3%)
 Frame = -1

Query: 769 RTRPSFRIFSSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQ-----SGQLFI 605
           RT  +  + SS T+FNITFA                      D    P        QL+I
Sbjct: 32  RTFITSSLSSSSTKFNITFAPPKPKPKPKPEPAIPINSDSDSDSNSVPNLEAEIGDQLYI 91

Query: 604 PWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAGA----QPKHSKAAR 437
           PWIVRDE GNLTLQS PPAR +  MA A              K A      +PKHSKAAR
Sbjct: 92  PWIVRDEKGNLTLQSTPPARLLHEMANASTSKKKKKGKEVASKAATVVPTPEPKHSKAAR 151

Query: 436 RFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIY 257
           RFYNENFR+PPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVC TPQT+VDP RD+IY
Sbjct: 152 RFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVIY 211

Query: 256 VNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLF 77
           VNGNRLPKKLP KVY ALNKPKGYICS+GEKE KSVM LFD ++KSW KR+PG PKPRLF
Sbjct: 212 VNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRLF 271

Query: 76  TVGRLDVATTGLIIVTNDGDFAQRV 2
           TVGRLDVATTGLIIVTNDG+F  ++
Sbjct: 272 TVGRLDVATTGLIIVTNDGEFTHQI 296


>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
           [Solanum lycopersicum]
          Length = 414

 Score =  316 bits (810), Expect = 7e-84
 Identities = 170/266 (63%), Positives = 190/266 (71%), Gaps = 10/266 (3%)
 Frame = -1

Query: 769 RTRPSFRIFSSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQS------GQLF 608
           RT  +  + SS T+FNITFA                 +  S+  +    +       QL+
Sbjct: 32  RTFITSSLSSSSTKFNITFAPPKPKPKTKPEPAIPIINPNSDSNSDSVPNLDAEVGDQLY 91

Query: 607 IPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAGA----QPKHSKAA 440
           IPWIVRDE GNLTLQS PPAR +  MA A              K A      +PKHSKAA
Sbjct: 92  IPWIVRDEKGNLTLQSTPPARLLHEMANASTGKKKKKGKEVASKAATVVPTPEPKHSKAA 151

Query: 439 RRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDII 260
           RRFYNENFR+PPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVC TPQT+VDP RD+I
Sbjct: 152 RRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPARDVI 211

Query: 259 YVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRL 80
           YVNGNRLPKKLP KVY ALNKPKGYICS+GEKE KSVM LFD ++KSW KR+PG PKPRL
Sbjct: 212 YVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQPKPRL 271

Query: 79  FTVGRLDVATTGLIIVTNDGDFAQRV 2
           FTVGRLDVATTGLIIVTNDG+F  ++
Sbjct: 272 FTVGRLDVATTGLIIVTNDGEFTHQI 297


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
           gi|550332354|gb|EEE89362.2| hypothetical protein
           POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  316 bits (809), Expect = 1e-83
 Identities = 178/277 (64%), Positives = 194/277 (70%), Gaps = 10/277 (3%)
 Frame = -1

Query: 802 SPSILTKACFCRTRPSFRIFSSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQ 623
           S S+L K+     RP+ RI +S  EFNITFA                  LP+  QT    
Sbjct: 21  SLSLLNKSI----RPT-RITAS-LEFNITFAPPKPKPK-----------LPANLQTDAAS 63

Query: 622 ----SGQLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAG---- 467
                GQLFIPWIVR E+GNL LQS PPAR + A+A A                      
Sbjct: 64  LSLPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKKESSGNVKAK 123

Query: 466 --AQPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTP 293
             A+P  SKAARRFYNENFR+  QRLSKVLAAAGVASRRSSE LIF+G+VTVNGSVCNTP
Sbjct: 124 LEAEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTP 183

Query: 292 QTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWG 113
           QTRVDPGRD IYVNGNRLPKKLPPK+Y ALNKPKGYICS GEKE KSVMCL D Y +SW 
Sbjct: 184 QTRVDPGRDAIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWD 243

Query: 112 KRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           KRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQ++
Sbjct: 244 KRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQI 280


>gb|EYU32425.1| hypothetical protein MIMGU_mgv1a007390mg [Mimulus guttatus]
          Length = 409

 Score =  311 bits (797), Expect = 2e-82
 Identities = 172/286 (60%), Positives = 192/286 (67%), Gaps = 18/286 (6%)
 Frame = -1

Query: 805 FSPSILTKACFCRTRPSFRIF----------SSHTEFNITFAXXXXXXXXXXXXXXXXPD 656
           F+   L+K  F   R  FR            ++  EF ITFA                  
Sbjct: 11  FTTLHLSKTSFILPRRHFRTVITSSLSTTTTTAAAEFKITFAPPKPKP-----------Q 59

Query: 655 LPSEDQTQQP---QSGQLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXX 485
           L   D T  P      QL +PWI+RDENGN++LQ  PP RF++AMA              
Sbjct: 60  LQKSDPTNAPGIDSGDQLLVPWILRDENGNISLQKMPPQRFLKAMANESTQKKKKRDDKT 119

Query: 484 XXKDAGA-----QPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVT 320
             K A A     +PK+SKAARRFYNE FREPPQRL+KVLA AGVASRRSSEELIFQG+VT
Sbjct: 120 PAKKAKAAMQYVEPKYSKAARRFYNERFREPPQRLAKVLATAGVASRRSSEELIFQGKVT 179

Query: 319 VNGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCL 140
           VNGSVCNTPQTRVDP RDIIYVNG+RL KKLPPKVY ALNKPKGYICSAGE+E KSV  L
Sbjct: 180 VNGSVCNTPQTRVDPARDIIYVNGSRLAKKLPPKVYLALNKPKGYICSAGEEETKSVFSL 239

Query: 139 FDAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           FD +MK W KRNPG+PKPRLFTVGRLDVATTGLIIVTNDG+FA +V
Sbjct: 240 FDDFMKGWDKRNPGIPKPRLFTVGRLDVATTGLIIVTNDGEFANKV 285


>ref|XP_006848911.1| hypothetical protein AMTR_s00161p00064200 [Amborella trichopoda]
           gi|548852364|gb|ERN10492.1| hypothetical protein
           AMTR_s00161p00064200 [Amborella trichopoda]
          Length = 403

 Score =  311 bits (796), Expect = 3e-82
 Identities = 166/259 (64%), Positives = 185/259 (71%), Gaps = 3/259 (1%)
 Frame = -1

Query: 769 RTRPSFRIFSSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQP-QSGQLFIPWIV 593
           R  P  +  S+ T+FNITF                        Q + P Q   LFIPWIV
Sbjct: 43  RNVPLIKASSASTQFNITFGARKKENPSPEMGEQDSSSSIKAPQKELPSQPAPLFIPWIV 102

Query: 592 RDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAG--AQPKHSKAARRFYNEN 419
           +DENGNL +QS PPA  + AMA A              K     A+PKHSKAARRFYN+N
Sbjct: 103 KDENGNLKIQSTPPAHILSAMAEASTAKKTKKKKEGGSKSGSLSAEPKHSKAARRFYNQN 162

Query: 418 FREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRL 239
           FREP QRLSKVLA+AGVASRRSSEELIF G+VTVNGSVCN PQTRVDP +D+IYVNG+RL
Sbjct: 163 FREP-QRLSKVLASAGVASRRSSEELIFDGKVTVNGSVCNVPQTRVDPIKDVIYVNGSRL 221

Query: 238 PKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLD 59
            KKLPPK+YFALNKPKGYICS+ EKE KSV+ LFD Y KSW K NPG+PKPRLFTVGRLD
Sbjct: 222 AKKLPPKLYFALNKPKGYICSSSEKESKSVLMLFDDYWKSWNKINPGIPKPRLFTVGRLD 281

Query: 58  VATTGLIIVTNDGDFAQRV 2
           VATTGLIIVTNDGDFAQR+
Sbjct: 282 VATTGLIIVTNDGDFAQRI 300


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
           [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
           PREDICTED: uncharacterized RNA pseudouridine synthase
           aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  308 bits (790), Expect = 2e-81
 Identities = 167/247 (67%), Positives = 178/247 (72%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQSGQLFIPWIVRDENGNLTLQ 563
           SS  EFNITFA                 D  S         GQLFIPWIVR E+GNL LQ
Sbjct: 45  SSSLEFNITFAPPKPKPKSEVEDPFQFIDRNS--------GGQLFIPWIVRGEDGNLKLQ 96

Query: 562 SQPPARFVQAMAFADXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFREPPQRLSKVL 383
           S PP RF+ +++  +             K     PKHSKAARRFYNEN RE  QRLSKVL
Sbjct: 97  SHPPTRFLHSVS--EDETKPKKKKVSAGKPITEPPKHSKAARRFYNENIRESSQRLSKVL 154

Query: 382 AAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFAL 203
           AAAGVASRRSSEELIF GRVTVNGSVCNTPQTRVDP RDIIYVNGNRLPKKLPPKVY AL
Sbjct: 155 AAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLAL 214

Query: 202 NKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTND 23
           NKPKGYICS+G+KE KSV+ LFD Y+KSW K  PG PKPRLFTVGRLDVATTGLIIVTND
Sbjct: 215 NKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTND 274

Query: 22  GDFAQRV 2
           GDFAQ +
Sbjct: 275 GDFAQGI 281


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
           [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  307 bits (787), Expect = 3e-81
 Identities = 171/255 (67%), Positives = 182/255 (71%), Gaps = 8/255 (3%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQSG-----QLFIPWIVRDENG 578
           SS  EFNITFA                   P  D    P S      QLFIPWIVR E+G
Sbjct: 35  SSSLEFNITFAPAPK---------------PKPDPNSLPASSSSSGQQLFIPWIVRGEDG 79

Query: 577 NLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAG---AQPKHSKAARRFYNENFREP 407
            L LQS PPAR +  MA AD             K      A+PKHSKAARRFYNENFRE 
Sbjct: 80  KLKLQSHPPARLLHEMAQADTKTKSKKNKDTAQKKQRVLTAEPKHSKAARRFYNENFRES 139

Query: 406 PQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPKKL 227
            QRLSKVLAAAGVASRRSSE+LIF G+VTVNGSVCNTPQT VDPGRDIIYVNGNRLPKKL
Sbjct: 140 -QRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQTPVDPGRDIIYVNGNRLPKKL 198

Query: 226 PPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVATT 47
           PPKVY ALNKPKGYIC+AGEK  KSV+ LFD Y+KSW KRNPG P+PRLFTVGRLDVATT
Sbjct: 199 PPKVYLALNKPKGYICAAGEK--KSVLSLFDDYLKSWDKRNPGTPRPRLFTVGRLDVATT 256

Query: 46  GLIIVTNDGDFAQRV 2
           GLI+VTNDGDFAQ +
Sbjct: 257 GLIVVTNDGDFAQSI 271


>ref|XP_007009966.1| Pseudouridine synthase family protein isoform 4 [Theobroma cacao]
           gi|508726879|gb|EOY18776.1| Pseudouridine synthase
           family protein isoform 4 [Theobroma cacao]
          Length = 350

 Score =  306 bits (785), Expect = 6e-81
 Identities = 162/257 (63%), Positives = 183/257 (71%), Gaps = 10/257 (3%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQ-PQSGQLFIPWIVRDENGNLTL 566
           SS  +FNITFA                  +  + ++   P +GQLFIPWIVR E+GNL L
Sbjct: 74  SSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKL 133

Query: 565 QSQPPARFVQAMAFA---------DXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFR 413
           Q+ PPAR + A+A A         D               +   PK SKAARRFYNENF 
Sbjct: 134 QAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFT 193

Query: 412 EPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPK 233
           EPPQRLSKVLAAAGVASRR SEELIF G+VTVNGSVCN PQTRVDP +DIIYVNG+RLPK
Sbjct: 194 EPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPK 253

Query: 232 KLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVA 53
           KLPPK+Y ALNKPKGYICS+GEKEFKSV+ LF+ Y+K W K N G PKPRLFTVGRLDVA
Sbjct: 254 KLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVA 313

Query: 52  TTGLIIVTNDGDFAQRV 2
           TTGLIIVTNDGDFAQ++
Sbjct: 314 TTGLIIVTNDGDFAQKL 330


>ref|XP_007009965.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
           gi|508726878|gb|EOY18775.1| Pseudouridine synthase
           family protein isoform 3 [Theobroma cacao]
          Length = 374

 Score =  306 bits (785), Expect = 6e-81
 Identities = 162/257 (63%), Positives = 183/257 (71%), Gaps = 10/257 (3%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQ-PQSGQLFIPWIVRDENGNLTL 566
           SS  +FNITFA                  +  + ++   P +GQLFIPWIVR E+GNL L
Sbjct: 74  SSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKL 133

Query: 565 QSQPPARFVQAMAFA---------DXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFR 413
           Q+ PPAR + A+A A         D               +   PK SKAARRFYNENF 
Sbjct: 134 QAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFT 193

Query: 412 EPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPK 233
           EPPQRLSKVLAAAGVASRR SEELIF G+VTVNGSVCN PQTRVDP +DIIYVNG+RLPK
Sbjct: 194 EPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPK 253

Query: 232 KLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVA 53
           KLPPK+Y ALNKPKGYICS+GEKEFKSV+ LF+ Y+K W K N G PKPRLFTVGRLDVA
Sbjct: 254 KLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVA 313

Query: 52  TTGLIIVTNDGDFAQRV 2
           TTGLIIVTNDGDFAQ++
Sbjct: 314 TTGLIIVTNDGDFAQKL 330


>ref|XP_007009964.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao] gi|508726877|gb|EOY18774.1| Pseudouridine
           synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 398

 Score =  306 bits (785), Expect = 6e-81
 Identities = 162/257 (63%), Positives = 183/257 (71%), Gaps = 10/257 (3%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQ-PQSGQLFIPWIVRDENGNLTL 566
           SS  +FNITFA                  +  + ++   P +GQLFIPWIVR E+GNL L
Sbjct: 25  SSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKL 84

Query: 565 QSQPPARFVQAMAFA---------DXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFR 413
           Q+ PPAR + A+A A         D               +   PK SKAARRFYNENF 
Sbjct: 85  QAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFT 144

Query: 412 EPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPK 233
           EPPQRLSKVLAAAGVASRR SEELIF G+VTVNGSVCN PQTRVDP +DIIYVNG+RLPK
Sbjct: 145 EPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQTRVDPAKDIIYVNGSRLPK 204

Query: 232 KLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVA 53
           KLPPK+Y ALNKPKGYICS+GEKEFKSV+ LF+ Y+K W K N G PKPRLFTVGRLDVA
Sbjct: 205 KLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTVGRLDVA 264

Query: 52  TTGLIIVTNDGDFAQRV 2
           TTGLIIVTNDGDFAQ++
Sbjct: 265 TTGLIIVTNDGDFAQKL 281


>ref|XP_007218062.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
           gi|462414524|gb|EMJ19261.1| hypothetical protein
           PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  304 bits (778), Expect = 4e-80
 Identities = 160/247 (64%), Positives = 183/247 (74%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQPQSGQLFIPWIVRDENGNLTLQ 563
           SS  EFNITFA                    S +   +  +GQL IPWIVR E+GNL LQ
Sbjct: 43  SSSLEFNITFAPSKPKPKLKPD---------SAEPDPEALAGQLIIPWIVRGEDGNLKLQ 93

Query: 562 SQPPARFVQAMAFADXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFREPPQRLSKVL 383
           S PPARF+QA+                   A  +PK+SKAARRFYNENFR+  QRLSKVL
Sbjct: 94  SHPPARFLQAIETKSKTKKKKEGAEKRVPTA--EPKYSKAARRFYNENFRDASQRLSKVL 151

Query: 382 AAAGVASRRSSEELIFQGRVTVNGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFAL 203
           AAAGVASRRSSE+LIF G+VTVNGSVCNTPQ+RVDPGRDIIYVNGNRLPK+LPPKVY AL
Sbjct: 152 AAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYVNGNRLPKRLPPKVYLAL 211

Query: 202 NKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTND 23
           NKPKGYIC++GE   KSV+ LF+ Y+K+W KRN G+P+PRLFTVGRLDVATTGLIIVTND
Sbjct: 212 NKPKGYICASGEN--KSVLSLFEDYLKTWDKRNSGIPRPRLFTVGRLDVATTGLIIVTND 269

Query: 22  GDFAQRV 2
           GDFAQ++
Sbjct: 270 GDFAQKI 276


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
           gi|482562896|gb|EOA27086.1| hypothetical protein
           CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  302 bits (773), Expect = 1e-79
 Identities = 156/225 (69%), Positives = 170/225 (75%), Gaps = 20/225 (8%)
 Frame = -1

Query: 616 QLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXKDAGAQ-------- 461
           QLFIPWIVR ++G L LQSQPPAR + ++A                K   A         
Sbjct: 115 QLFIPWIVRGDDGTLKLQSQPPARLIHSLAIDATTQNPKKKEKSKKKQTQATSSSATASS 174

Query: 460 ------------PKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTV 317
                       PK SKAARRFYNENF+EPPQRLSKVLAAAGVASRR+SEELIF G+VTV
Sbjct: 175 SASASSPPPQSVPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTV 234

Query: 316 NGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLF 137
           NG +CNTPQTRVDP RDIIYVNGNR+PKKLPPKVYFALNKPKGYICS+GEKE KSV+ LF
Sbjct: 235 NGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLF 294

Query: 136 DAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           D YM SW KRNPG PKPRLFTVGRLDVATTGLIIVTNDGDFAQ++
Sbjct: 295 DEYMASWDKRNPGTPKPRLFTVGRLDVATTGLIIVTNDGDFAQQL 339


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 412

 Score =  302 bits (773), Expect = 1e-79
 Identities = 155/225 (68%), Positives = 171/225 (76%), Gaps = 20/225 (8%)
 Frame = -1

Query: 616 QLFIPWIVRDENGNLTLQSQPPARFVQAMAF---------ADXXXXXXXXXXXXXKDAGA 464
           QLFIPWIVR ++G L LQSQPPAR +  +A           D               A A
Sbjct: 71  QLFIPWIVRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATA 130

Query: 463 -----------QPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTV 317
                      +PK SKAARRFYNENF+EPPQRLSKVLAAAGVASRR+SEELIF G+VTV
Sbjct: 131 SASSPASHSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTV 190

Query: 316 NGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLF 137
           NG +CNTPQTRVDP RDIIYVNGNR+PKKLPPKVYFALNKPKGYICS+GEKE KSV+ LF
Sbjct: 191 NGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLF 250

Query: 136 DAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           D Y+ SW KRNPG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ++
Sbjct: 251 DEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKL 295


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  300 bits (769), Expect = 4e-79
 Identities = 170/286 (59%), Positives = 193/286 (67%), Gaps = 17/286 (5%)
 Frame = -1

Query: 808 HFSPSILTKACFCRTRPSFR---------IFSSHTEFNITFAXXXXXXXXXXXXXXXXPD 656
           H S S+L+ +     RPS R         + SS +EFNI+FA                 +
Sbjct: 14  HLSSSLLSLSSLS-LRPSIRHILPRVLCSLSSSTSEFNISFAPAKPKPQP---------E 63

Query: 655 LPSEDQTQQPQSGQLFIPWIVRDENGNLTLQSQPPARFVQAMAFADXXXXXXXXXXXXXK 476
               D        QLFIPWI+R ++GNL LQS PPAR + AMA AD             K
Sbjct: 64  ATEVDSLFGADGSQLFIPWIIRGDDGNLKLQSHPPARLLHAMAHADTKNSKKKKPTAAEK 123

Query: 475 D--------AGAQPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVT 320
                    + A+PK+SKAARRFYNENFRE  QRLSKVLAAAGVASRR+SEELI +GRVT
Sbjct: 124 KKKNDKADKSVAEPKYSKAARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEGRVT 183

Query: 319 VNGSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCL 140
           VNGSVCNTPQTRVDP +D+IYVNGNRLPK+LPPKVY ALNKPKGYICS G+K  KSVM L
Sbjct: 184 VNGSVCNTPQTRVDPAKDVIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSVMSL 241

Query: 139 FDAYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
           FD Y+K W KRN G  KPRLFTVGRLDVATTGLIIVTNDGDFAQ++
Sbjct: 242 FDDYLKIWDKRNLGQSKPRLFTVGRLDVATTGLIIVTNDGDFAQKL 287


>ref|XP_007009963.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
           gi|508726876|gb|EOY18773.1| Pseudouridine synthase
           family protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  300 bits (768), Expect = 5e-79
 Identities = 162/263 (61%), Positives = 183/263 (69%), Gaps = 16/263 (6%)
 Frame = -1

Query: 742 SSHTEFNITFAXXXXXXXXXXXXXXXXPDLPSEDQTQQ-PQSGQLFIPWIVRDENGNLTL 566
           SS  +FNITFA                  +  + ++   P +GQLFIPWIVR E+GNL L
Sbjct: 74  SSSLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPPLPSNGQLFIPWIVRGEDGNLKL 133

Query: 565 QSQPPARFVQAMAFA---------DXXXXXXXXXXXXXKDAGAQPKHSKAARRFYNENFR 413
           Q+ PPAR + A+A A         D               +   PK SKAARRFYNENF 
Sbjct: 134 QAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVGNASVEPPKLSKAARRFYNENFT 193

Query: 412 EPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCNTPQ------TRVDPGRDIIYVN 251
           EPPQRLSKVLAAAGVASRR SEELIF G+VTVNGSVCN PQ      TRVDP +DIIYVN
Sbjct: 194 EPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCNAPQASDNLQTRVDPAKDIIYVN 253

Query: 250 GNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFDAYMKSWGKRNPGLPKPRLFTV 71
           G+RLPKKLPPK+Y ALNKPKGYICS+GEKEFKSV+ LF+ Y+K W K N G PKPRLFTV
Sbjct: 254 GSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKRWDKMNRGSPKPRLFTV 313

Query: 70  GRLDVATTGLIIVTNDGDFAQRV 2
           GRLDVATTGLIIVTNDGDFAQ++
Sbjct: 314 GRLDVATTGLIIVTNDGDFAQKL 336


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
           gi|21617894|gb|AAM66944.1| unknown [Arabidopsis
           thaliana] gi|26450440|dbj|BAC42334.1| unknown protein
           [Arabidopsis thaliana] gi|330254545|gb|AEC09639.1|
           pseudouridine synthase family protein [Arabidopsis
           thaliana]
          Length = 410

 Score =  298 bits (764), Expect = 2e-78
 Identities = 151/224 (67%), Positives = 168/224 (75%), Gaps = 19/224 (8%)
 Frame = -1

Query: 616 QLFIPWIVRDENGNLTLQSQPPARFVQAMAF-------------------ADXXXXXXXX 494
           QLFIPWIVR ++G L LQSQPPAR +  +A                    A         
Sbjct: 70  QLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTT 129

Query: 493 XXXXXKDAGAQPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVN 314
                  +  +PK SKAARRFYNENF+E PQRLSKVLAAAGVASRR+SEELIF G+VTVN
Sbjct: 130 ASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVN 189

Query: 313 GSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFD 134
           G +CNTPQTRVDP RDIIYVNGNR+PKKLPPKVYFALNKPKGYICS+GEKE KS + LFD
Sbjct: 190 GILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFD 249

Query: 133 AYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
            Y+ SW KRNPG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ++
Sbjct: 250 EYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKL 293


>gb|AAC28992.1| unknown protein [Arabidopsis thaliana]
          Length = 303

 Score =  298 bits (764), Expect = 2e-78
 Identities = 151/224 (67%), Positives = 168/224 (75%), Gaps = 19/224 (8%)
 Frame = -1

Query: 616 QLFIPWIVRDENGNLTLQSQPPARFVQAMAF-------------------ADXXXXXXXX 494
           QLFIPWIVR ++G L LQSQPPAR +  +A                    A         
Sbjct: 70  QLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTT 129

Query: 493 XXXXXKDAGAQPKHSKAARRFYNENFREPPQRLSKVLAAAGVASRRSSEELIFQGRVTVN 314
                  +  +PK SKAARRFYNENF+E PQRLSKVLAAAGVASRR+SEELIF G+VTVN
Sbjct: 130 ASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVN 189

Query: 313 GSVCNTPQTRVDPGRDIIYVNGNRLPKKLPPKVYFALNKPKGYICSAGEKEFKSVMCLFD 134
           G +CNTPQTRVDP RDIIYVNGNR+PKKLPPKVYFALNKPKGYICS+GEKE KS + LFD
Sbjct: 190 GILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFD 249

Query: 133 AYMKSWGKRNPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQRV 2
            Y+ SW KRNPG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ++
Sbjct: 250 EYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKL 293