BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00016630
         (1665 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   550   e-154
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   528   e-147
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     525   e-146
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     514   e-143
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        508   e-141
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   506   e-140
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           505   e-140
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   504   e-140
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   503   e-140
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   500   e-139
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   499   e-138
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   494   e-137
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   492   e-136
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     490   e-136
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     486   e-134
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   468   e-129
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     466   e-128
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              464   e-128
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              461   e-127
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              460   e-127

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  550 bits (1418), Expect = e-154
 Identities = 290/556 (52%), Positives = 371/556 (66%), Gaps = 3/556 (0%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TLLE+ARCM SNAGL + +WAEAV+TACYLINR P T I  KTPME+W+G    Y NL+ 
Sbjct: 580  TLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKA 639

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AYYH++E K+  RA K +F+GY +GVKG+R+W    K++++SR+V FDE+ +    
Sbjct: 640  FGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTI 699

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLE 542
                   PT  SE      D QVE+   +    +++PE             + +  TD+ 
Sbjct: 700  V-----KPTTTSETGSL--DKQVEFQVIQNESDLKEPEE---------EDQEPQTETDIP 743

Query: 543  DNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEE-- 716
            ++                    P   H         S+A+             +G+E+  
Sbjct: 744  ESM-------------------PSDIHQ--------SIAQDRPRRVGVRPPTRYGFEDMV 776

Query: 717  -YASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIG 893
             YA       D  EP+TY+ A+ SS S +W  AM +E++SLHKN+TW+LV  P G+K I 
Sbjct: 777  GYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIIT 836

Query: 894  CKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALV 1073
            CKWVF  K+GI  +    +GV+YKAR+VA+G+ Q+EGVDYNEIFSPVV+HTSIR+LLA+V
Sbjct: 837  CKWVFKKKEGISPA----EGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIV 892

Query: 1074 AQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWY 1253
            A  ++ELEQ+DVKTAFLHG+LEE+IYM+QPDGF V GKE+HVCKLKKSLYGLKQSPRQWY
Sbjct: 893  AHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWY 952

Query: 1254 LRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQLSK 1433
             RFD +MVK  Y RS YD CVYY +LN  S+IYL+LYVDDMLIAAK KYDI  LK  LS 
Sbjct: 953  KRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSA 1012

Query: 1434 EFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRL 1613
            EFEMKDLGAA+KILGM I RDR+  +L +SQR Y++KVL+RFGMS SKP+ TP  A   L
Sbjct: 1013 EFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHL 1072

Query: 1614 TALQSPTTEVEKEYMA 1661
            TA+ +P +E EKEYM+
Sbjct: 1073 TAMFAPQSEEEKEYMS 1088


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  528 bits (1359), Expect = e-147
 Identities = 287/554 (51%), Positives = 365/554 (65%), Gaps = 1/554 (0%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ KARC+ SNAGL K +WAEAV+TACYLINRSPS AI  KTP+EVW+G+P  Y +LR+
Sbjct: 809  TIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRV 868

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K IFLGYP GVKGY+LWC  TKK+V+SR+V F E+VM +  
Sbjct: 869  FGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLH-- 926

Query: 363  RFTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDL 539
                 D P+ N  + S++    QVE++      P ++  +++  +          +  D 
Sbjct: 927  -----DKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDE---------PVIEDS 972

Query: 540  EDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEEY 719
              +                    P Q++ EE      +L+                 EE 
Sbjct: 973  NSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVA---------------EEI 1017

Query: 720  ASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCK 899
               A       EP+TY  A+ S     W  AM +E++SL KN TWELVK+PK KKPI CK
Sbjct: 1018 EGNA-------EPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 1070

Query: 900  WVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQ 1079
            W+F  K+GI  S    D  RYKARL+AKGY+Q  G+D+N++FSPVVKH+SIR LL++VA 
Sbjct: 1071 WIFKRKEGISSS----DEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAM 1126

Query: 1080 YDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLR 1259
            +D ELEQMDVKTAFLHG+LEEDIYM QP GFVV GKE+ VC+LKKSLYGLKQSPRQWY R
Sbjct: 1127 HDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 1186

Query: 1260 FDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQLSKEF 1439
            FD FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K +I  LK QLS EF
Sbjct: 1187 FDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEF 1245

Query: 1440 EMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTA 1619
            EMKDLGAAKKILGM I+R R   +L +SQ+ Y+EKVL RF M D+KPV+TPL A FRL++
Sbjct: 1246 EMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSS 1305

Query: 1620 LQSPTTEVEKEYMA 1661
               P ++ + EYM+
Sbjct: 1306 DLCPQSDYDIEYMS 1319


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  525 bits (1353), Expect = e-146
 Identities = 286/554 (51%), Positives = 367/554 (66%), Gaps = 1/554 (0%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ KARCM SNAGL K +WAEAV+TACYLINRSP  AI  KTP+EVW+G+PT Y +LR+
Sbjct: 574  TIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRV 633

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K IFLGY  GVKGY+LWC  TKK+V+SR+V F E+V+ +  
Sbjct: 634  FGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILH-- 691

Query: 363  RFTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDL 539
                 D P+ N  + S++    QVE++      P ++     D  + Q +P    +  D 
Sbjct: 692  -----DKPSTNVPVESQEKASVQVEHLISSGHAPEKE-----DVAINQDAP----VIEDS 737

Query: 540  EDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEEY 719
            + +                    P +++ EE +    +L                     
Sbjct: 738  DSSIVHQSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYAL--------------------- 776

Query: 720  ASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCK 899
             S A       EP+TY  A+ S     W  AM +E++SL KN TWELVK+PK KKPI CK
Sbjct: 777  -SVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 835

Query: 900  WVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQ 1079
            W+F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSPVVKH+SIR LL +VA 
Sbjct: 836  WIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAM 891

Query: 1080 YDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLR 1259
            +D ELEQM+VKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLKQSPRQWY R
Sbjct: 892  HDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKR 951

Query: 1260 FDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQLSKEF 1439
            FD FM+ Q+++ S YD CVY K ++ GS IYLLLYVDDMLIAAK K +I+ LK QLS EF
Sbjct: 952  FDSFMLSQKFRISNYDSCVYLKVVD-GSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEF 1010

Query: 1440 EMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTA 1619
            EMKDLGAAKKILGM I+R+R  G+L +SQ+ Y+EKVL RF M D+KPV+TPL A FRL++
Sbjct: 1011 EMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSS 1070

Query: 1620 LQSPTTEVEKEYMA 1661
               P ++ + EYM+
Sbjct: 1071 DLCPLSDYDIEYMS 1084


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  514 bits (1323), Expect = e-143
 Identities = 288/563 (51%), Positives = 368/563 (65%), Gaps = 10/563 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ KARCM SNA L K +WAEAV+TACYLINRSPS AI  KTP+EVW+G+P  Y +LR+
Sbjct: 511  TIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRV 570

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  R +K IFLGY  GVKGY+LWC  TKK+V+SR+V F E++M +  
Sbjct: 571  FGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLH-- 628

Query: 363  RFTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESV---------SDSDMGQTSP 512
                 D P+ N  + S++    QVE++      P ++  ++         SDS + Q SP
Sbjct: 629  -----DKPSTNVPVESQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSP 683

Query: 513  SQGEISTDLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXX 692
             +  I+ D     T                  P +++ EE      +L+           
Sbjct: 684  KRS-IAKDRPKRNTK-----------------PPRRYIEEANIVAYALSVA--------- 716

Query: 693  XXXFGYEEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVP 872
                  EE    A       EP+TY  A+ S     W  AM +E++SL KN +WEL K+P
Sbjct: 717  ------EEIEGNA-------EPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLP 763

Query: 873  KGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSI 1052
            K KKPI CKW+F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSPVVKH+SI
Sbjct: 764  KEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSI 819

Query: 1053 RILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLK 1232
            R LL++VA +D ELEQMDVKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLK
Sbjct: 820  RTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLK 879

Query: 1233 QSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDL 1412
            QSPRQWY RFD FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K +I  
Sbjct: 880  QSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAK 938

Query: 1413 LKDQLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTP 1592
            LK QLS EFEMKDLGAAKKILGM I+R+R  G+L +SQ+ Y+EKVL RF M D+K V+T 
Sbjct: 939  LKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTL 998

Query: 1593 LGAQFRLTALQSPTTEVEKEYMA 1661
            L A FRL++   P +  + EYM+
Sbjct: 999  LAAHFRLSSDLCPQSAYDIEYMS 1021


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  508 bits (1307), Expect = e-141
 Identities = 271/556 (48%), Positives = 353/556 (63%), Gaps = 6/556 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TL++K RCM  N+ L + +WAEAVNTA YL+NRSPS+AIG KTP E+W G P  Y NLR+
Sbjct: 592  TLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRV 651

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA--N 356
            FGCPAY HI + K+  RA+K +F+GYP+GVKGY++WC    K +VSRDV F E+V+   +
Sbjct: 652  FGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHESVLLKES 711

Query: 357  VQRFTGW-DSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEIST 533
             +   G  D+P  N     +     VE +  ++S    + E+ SD +       + E+S 
Sbjct: 712  AEHDAGLQDNPAANKRSGSETSKVNVELLTDKSS----EKEAASDDERATAESEEHEVS- 766

Query: 534  DLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYE 713
              E  + DL                P++                            +GY 
Sbjct: 767  --ELPQADLQNYQLARDRVRREVRAPVR----------------------------YGYA 796

Query: 714  EYASCAFIAYDE---EEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
            +  + A +  DE   EEP  +  A+ S H  +W +AM +E++SL +N+TW L+  P  K+
Sbjct: 797  DLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKR 856

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             I CKW+F   +GIPD    V+  +YKARLVA+G+ Q+EGVD+NEIFSPVVKH+SIRILL
Sbjct: 857  LINCKWIFKRNEGIPD----VEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILL 912

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            A+VA  D+ELEQMDVKTAFLHG+LEE I M+QP+GF    KED+VC L KSLYGLKQSPR
Sbjct: 913  AMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPR 972

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QWY RFD FMV + Y+RS YD CVY+   + G   YLLLYVDDMLIA+K K +I+ LK+ 
Sbjct: 973  QWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNL 1032

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            L  EFEMKDLG AK+ILGM I RDR  G L +SQ  Y++KVL RF M D KPV TPLG Q
Sbjct: 1033 LKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQ 1092

Query: 1605 FRLTALQSPTTEVEKE 1652
            F+L+A  + T+E E +
Sbjct: 1093 FKLSA--ATTSEDESQ 1106


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  506 bits (1302), Expect = e-140
 Identities = 282/559 (50%), Positives = 360/559 (64%), Gaps = 6/559 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ +ARCM S+A ++K +WAEA +TACYLINRSPS  +  KTP+EVW+GTP  Y  L++
Sbjct: 594  TIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKV 653

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM    
Sbjct: 654  FGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM---- 709

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSP--SQGEISTD 536
             FT       NS  S  V + +++       R     E V D    Q  P   Q + + D
Sbjct: 710  -FT-------NSLPSEHVPEKELQ-------RMHMQVEHVDDDTGVQVEPVHEQDDHNND 754

Query: 537  LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXF---G 707
            + D+    D               PI Q +EE     L +A+                  
Sbjct: 755  VADDDAHDDVQQTP----------PILQLEEE-----LPIAQRKSKRTTKPPKRLIEECN 799

Query: 708  YEEYA-SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
               YA SCA    +  EP TY+ A+R   S  W  AM EE+QSL KN TWE+V +PK KK
Sbjct: 800  LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 859

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             I CKW+F  K+G+  S    +  +YKARLVA+GY+Q  GVDYN++FSPVVKH+SIR  L
Sbjct: 860  TISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFL 915

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            ++VA +D+ELEQ+DVKTAFLHG+LEEDIYM QP+GF+V GKE +VCKLK+SLYGLKQSPR
Sbjct: 916  SIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPR 975

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QW  RFD FM+   +KRS+YD CVY K +N GS IYLLLYVDDMLIAAKSK +I  LK  
Sbjct: 976  QWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKL 1034

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            LS EF+MKDLG+AKKILGM ISRDRK G L +SQ +Y++KVL RF M ++K V+TP+   
Sbjct: 1035 LSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPH 1094

Query: 1605 FRLTALQSPTTEVEKEYMA 1661
            F+L+A Q P+ + E EYM+
Sbjct: 1095 FKLSAAQCPSIDAEIEYMS 1113


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  505 bits (1301), Expect = e-140
 Identities = 281/559 (50%), Positives = 361/559 (64%), Gaps = 6/559 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ +ARCM S+A ++K +WAEA +TACYLINRSPS  +  KTP+EVW+GTP  Y  L++
Sbjct: 596  TIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKV 655

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM    
Sbjct: 656  FGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM---- 711

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSP--SQGEISTD 536
             FT       NS  S  V + +++       R     E V D    Q  P   Q + + D
Sbjct: 712  -FT-------NSLPSEHVPEKELQ-------RMHMQVEHVDDDTGVQVEPVDEQDDHNND 756

Query: 537  LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXF---G 707
            + D+    D               PI Q +E+     LS+A+                  
Sbjct: 757  VADDDAHDDVQQTP----------PILQLEED-----LSIAQRKSKRTTKPPKRLIEECN 801

Query: 708  YEEYA-SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
               YA SCA    +  EP TY+ A+R   S  W  AM EE+QSL KN TWE+V +PK KK
Sbjct: 802  LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 861

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             I CKW+F  K+ +     + +  +YKARLVA+GY+Q  GVDYN++FSPVVKH+SIR  L
Sbjct: 862  TISCKWIFKRKEAL----SLSEPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFL 917

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            ++VA +D+ELEQ+DVKTAFLHG+LEEDIYM QP+GF+V GKE +VCKLK+SLYGLKQSPR
Sbjct: 918  SIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPR 977

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QW  RFD FM+   +KRS+YD CVY K +N GS IYLLLYVDDMLIAAKSK +I  LK  
Sbjct: 978  QWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKL 1036

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            LS EF+MKDLG+AKKILGM ISRDRK G L +SQ +Y++KVL RF M ++K V+TP+   
Sbjct: 1037 LSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPH 1096

Query: 1605 FRLTALQSPTTEVEKEYMA 1661
            F+L+A Q P+T+ E EYM+
Sbjct: 1097 FKLSAAQCPSTDAEIEYMS 1115


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  504 bits (1297), Expect = e-140
 Identities = 282/559 (50%), Positives = 360/559 (64%), Gaps = 6/559 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ +ARCM S+A ++K +WAEA +TACYLINRSPS  +  KTP+EVW+GTP  Y  L++
Sbjct: 594  TIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKV 653

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM    
Sbjct: 654  FGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM---- 709

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSP--SQGEISTD 536
             FT       NS  S  V + +++       R     E V D    Q  P   Q + + D
Sbjct: 710  -FT-------NSLPSEHVPEKELQ-------RMHMQVEHVDDYTGVQVEPVHEQDDHNND 754

Query: 537  LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXF---G 707
            + D+    D               PI Q +EE     L +A+                  
Sbjct: 755  VADDDAHDDVQQTP----------PILQLEEE-----LPIAQRKSKRTTKPPKRLIEECN 799

Query: 708  YEEYA-SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
               YA SCA    +  EP TY+ A+R   S  W  AM EE+QSL KN TWE+V +PK KK
Sbjct: 800  LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 859

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             I CKW+F  K+G+  S    +  +YKARLVA+GY+Q  GVDYN++FSPVVKH+SIR  L
Sbjct: 860  TISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFL 915

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            ++VA +D+ELEQ+DVKTAFLHG+LEEDIYM QP+GF+V GKE +VCKLK+SLYGLKQSPR
Sbjct: 916  SIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPR 975

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QW  RFD FM+   +KRS+YD CVY K +N GS IYLLLYVDDMLIAAKSK +I  LK  
Sbjct: 976  QWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKL 1034

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            LS EF+MKDLG+AKKIL M ISRDRK G L +SQ +Y++KVL RF M ++K V+TP+   
Sbjct: 1035 LSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPH 1094

Query: 1605 FRLTALQSPTTEVEKEYMA 1661
            F+L+A Q P+T+ E EYM+
Sbjct: 1095 FKLSAAQCPSTDAEIEYMS 1113


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  503 bits (1296), Expect = e-140
 Identities = 281/559 (50%), Positives = 359/559 (64%), Gaps = 6/559 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ +ARCM S+A ++K +WAEA +TACYLINRSPS  +  KTP+EVW+G P  Y  L++
Sbjct: 594  TIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKV 653

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM    
Sbjct: 654  FGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM---- 709

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSP--SQGEISTD 536
             FT       NS  S  V + +++       R     E V D    Q  P   Q + + D
Sbjct: 710  -FT-------NSLPSEHVPEKELQ-------RMHMQVEHVDDDTGVQVEPVHEQDDHNND 754

Query: 537  LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXF---G 707
            + D+    D               PI Q +EE     L +A+                  
Sbjct: 755  VADDDAHDDVQQTP----------PILQLEEE-----LPIAQRKSKRTTKPPKRLIEECN 799

Query: 708  YEEYA-SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
               YA SCA    +  EP TY+ A+R   S  W  AM EE+QSL KN TWE+V +PK KK
Sbjct: 800  LSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKK 859

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             I CKW+F  K+G+  S    +  +YKARLVA+GY+Q  GVDYN++FSPVVKH+SIR  L
Sbjct: 860  TISCKWIFKRKEGLSSS----EPPKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFL 915

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            ++VA +D+ELEQ+DVKTAFLHG+LEEDIYM QP+GF+V GKE +VCKLK+SLYGLKQSPR
Sbjct: 916  SIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPR 975

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QW  RFD FM+   +KRS+YD CVY K +N GS IYLLLYVDDMLIAAKSK +I  LK  
Sbjct: 976  QWNKRFDSFMLSHSFKRSKYDSCVYIKHVN-GSPIYLLLYVDDMLIAAKSKIEITKLKKL 1034

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            LS EF+MKDLG+AKKILGM ISRDRK G L +SQ +Y++KVL RF M ++K V+TP+   
Sbjct: 1035 LSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPH 1094

Query: 1605 FRLTALQSPTTEVEKEYMA 1661
            F+L+A Q P+ + E EYM+
Sbjct: 1095 FKLSAAQCPSIDAEIEYMS 1113


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  500 bits (1287), Expect = e-139
 Identities = 271/558 (48%), Positives = 352/558 (63%), Gaps = 5/558 (0%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ KARCM SNA ++K +WAEA NTACYLINRSPS  +  KTP+E+W+G P  Y  LR+
Sbjct: 595  TIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRV 654

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+  +K+  RA+K +FLGY  GVKGY+LW   T K  +SR V F+E+VM    
Sbjct: 655  FGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMF--- 711

Query: 363  RFTGWDSPTENSELSRDV----DDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEIS 530
                      N  L  DV     D++ +Y++ +          +  +D+  T      + 
Sbjct: 712  ----------NDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPPVL 761

Query: 531  TDLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGY 710
               ++                     P++  +E D                         
Sbjct: 762  QPQDE--------PIAHRRTKRSCGAPVRLIEECDMV----------------------- 790

Query: 711  EEYA-SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKP 887
              YA SCA    +  EP TY  A+ S    +W  AM EE+QSL KN TWELV +PK KKP
Sbjct: 791  -YYAFSCAEQVENTLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKP 849

Query: 888  IGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLA 1067
            + CKW+F  K+G+  S    +  R+KARLVAKG++Q  GVDYN++FSPVVKH+SIR   +
Sbjct: 850  VRCKWIFKRKEGLSPS----EPPRFKARLVAKGFSQIVGVDYNDVFSPVVKHSSIRTFFS 905

Query: 1068 LVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQ 1247
            +VA +D+ELEQ+DVKTAFLHG+LEE+IYM QP+GF+V GKED+VCKLK+SLYGLKQSPRQ
Sbjct: 906  IVAMHDLELEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQ 965

Query: 1248 WYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQL 1427
            WY RFD FM+   +KRSE+D CVY K +N GS IYLLLYVDD+LIAAKSK  I  LK QL
Sbjct: 966  WYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDILIAAKSKEQITTLKKQL 1024

Query: 1428 SKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQF 1607
            S EF+MKDLGAAKKILGM I+RD+  G L +SQ+ Y++KVL  F M D+KPV+TP+   F
Sbjct: 1025 SSEFDMKDLGAAKKILGMEITRDKNSGLLFLSQQSYIKKVLQCFNMHDAKPVSTPIAPHF 1084

Query: 1608 RLTALQSPTTEVEKEYMA 1661
            +L+ALQ   T+ + EYM+
Sbjct: 1085 KLSALQCANTDEDVEYMS 1102


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  499 bits (1285), Expect = e-138
 Identities = 273/561 (48%), Positives = 352/561 (62%), Gaps = 8/561 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T++ KARCM SNA ++K +WAEA NTACYLINRSPS  +  KTP+E+W+G P  Y  LR+
Sbjct: 595  TIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRV 654

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H+   K+  RA+K +FLGY  GVKGY+LW   T K  +SR+V F+E VM N  
Sbjct: 655  FGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFN-- 712

Query: 363  RFTGWDSPTENSELSRDV----DDDQVEYIAPRTSRPIRDPESVSDSDMGQT---SPSQG 521
                         L  DV     D++ +Y++ +          +  +D+  T   SPS  
Sbjct: 713  -----------DSLPTDVIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPSVL 761

Query: 522  EISTD-LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXX 698
            +   + +   RT                  P++  +E D                     
Sbjct: 762  QPQDEPIAHRRTKRSCGA------------PVRLIEECDM-----------------VYY 792

Query: 699  XFGYEEYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKG 878
             F Y E            EP TY  A+ S    +W  A+ EE+QSL KN TWELV +PK 
Sbjct: 793  AFSYAEQVENTL------EPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQ 846

Query: 879  KKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRI 1058
            KKP+ CKW+F  K+G+  S    +  R+K RLVAKG++Q  GVDYN++FSPVVKH+SIR 
Sbjct: 847  KKPVRCKWIFKRKEGLSPS----EPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRT 902

Query: 1059 LLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQS 1238
              ++V  +D+ELEQ+DVKT FLHG+LEE+IYM QP+GF+V GKED+VCKLK+SLYGLKQS
Sbjct: 903  FFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQS 962

Query: 1239 PRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLK 1418
            PRQWY RFD FM+   +KRSE+D CVY K +N GS IYLLLYVDDMLIAAKSK  I  LK
Sbjct: 963  PRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQITTLK 1021

Query: 1419 DQLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLG 1598
             QLS EF+MKDLGAAKKILGM I+RDR  G L +SQ+ Y++KVL RF M D+KPV+TP+ 
Sbjct: 1022 KQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTPIA 1081

Query: 1599 AQFRLTALQSPTTEVEKEYMA 1661
              F+L+ALQ  +T+ + EYM+
Sbjct: 1082 PHFKLSALQCASTDEDVEYMS 1102


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  494 bits (1271), Expect = e-137
 Identities = 275/553 (49%), Positives = 356/553 (64%), Gaps = 1/553 (0%)
 Frame = +3

Query: 6    LLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIF 185
            ++ KARCM SNA L K +WAEAV+T CYLINRSPS A   KTP+EVW+G+P  Y +LR+F
Sbjct: 638  IISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVF 697

Query: 186  GCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQR 365
            GC AY H+   K+  RA+K IFLGYP GVKGY+LWC  TKK+V+SR+V F E+V+ +   
Sbjct: 698  GCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILH--- 754

Query: 366  FTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLE 542
                D P+ N  + S++    QVE++      P ++  +++     Q +P    +  D +
Sbjct: 755  ----DKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAIN-----QDAP----VIEDSD 801

Query: 543  DNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEEYA 722
             +                    P +++ EE      +L+                 EE  
Sbjct: 802  SSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVA---------------EEIE 846

Query: 723  SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKW 902
              A       EP+TY  A+ S     W  AM +E++SL KN TWE VK+PK KKPI CKW
Sbjct: 847  GNA-------EPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKW 899

Query: 903  VFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQY 1082
            +F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSP++KH+SIR LL +VA +
Sbjct: 900  IFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMH 955

Query: 1083 DMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRF 1262
            D ELEQMDVKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLKQSPRQWY RF
Sbjct: 956  DYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRF 1015

Query: 1263 DRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQLSKEFE 1442
            D FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K +I  LK QLS EF 
Sbjct: 1016 DSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFG 1074

Query: 1443 MKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQFRLTAL 1622
            MKDLGAAKKILGM I+R+R  G+L +SQ+ Y++KVL RF M D KP+       FRL   
Sbjct: 1075 MKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPII------FRL--- 1125

Query: 1623 QSPTTEVEKEYMA 1661
              P ++ + EYM+
Sbjct: 1126 -CPQSDYDIEYMS 1137


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  492 bits (1267), Expect = e-136
 Identities = 271/568 (47%), Positives = 346/568 (60%), Gaps = 16/568 (2%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TL+++ARCMR +AGLSK +WAEAVNTA YL+NRSPSTAI  KTP EVW+G P+ Y  L+I
Sbjct: 914  TLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKI 973

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLT--TKKIVVSRDVKFDETVMAN 356
            FGCPAY H+++ K+  RAMK IFLGY  GVKGYRLWC    T K ++SRDV FDE+ M  
Sbjct: 974  FGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFG 1033

Query: 357  VQRFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTD 536
             ++  G                               D    S +D+G     + E+   
Sbjct: 1034 QRKEFG-------------------------------DLAGTSKTDLGANQKVEFEVDAP 1062

Query: 537  LEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEE 716
            +E+   D                   ++    DQ D  S+A                   
Sbjct: 1063 MENGVDDTS-----------------EEQPVIDQNDSQSIAAXRPRREIRRPM------R 1099

Query: 717  YASC-----------AFIAYDE---EEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTW 854
            Y  C           A    +E   EEP +Y+ A+ S  S +W  +M +E+ SL KN+TW
Sbjct: 1100 YVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTW 1159

Query: 855  ELVKVPKGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPV 1034
            ELV +P+G KP+ CKW+F +KDGI +     +  +YK+RLVAK            +FSPV
Sbjct: 1160 ELVPLPEGVKPVDCKWLFKIKDGISED----EPPKYKSRLVAK------------VFSPV 1203

Query: 1035 VKHTSIRILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKK 1214
            VKH SIR+LLA+V+ +++EL+Q+DVKTAFLHG+LEE+IYM QP+GFV + K DHVC LKK
Sbjct: 1204 VKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKK 1263

Query: 1215 SLYGLKQSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKS 1394
            SLYGLKQSPRQWY RFD FMV   + R++YD CVY+K L  GS+IYLLLYVDDMLIAAK+
Sbjct: 1264 SLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKN 1323

Query: 1395 KYDIDLLKDQLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDS 1574
            + +I+ LK  LS EFEMKDLGAAKKILGM I RDR  G L VSQ+ Y+EK++  F M  S
Sbjct: 1324 RAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQAFHMDHS 1383

Query: 1575 KPVTTPLGAQFRLTALQSPTTEVEKEYM 1658
            KPV+TPL   F+      P+T+ E EYM
Sbjct: 1384 KPVSTPLAQHFKFDHSTLPSTDEEVEYM 1411


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  490 bits (1262), Expect = e-136
 Identities = 268/526 (50%), Positives = 344/526 (65%), Gaps = 1/526 (0%)
 Frame = +3

Query: 6    LLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRIF 185
            ++ KARCM SNA L K +WAEAV+T CYLINRSPS A   KTP+EVW+G+P  Y +LR+F
Sbjct: 638  IISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVF 697

Query: 186  GCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQR 365
            GC AY H+   K+  RA+K IFLGYP GVKGY+LWC  TKK+V+SR+V F E+V+ +   
Sbjct: 698  GCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVILH--- 754

Query: 366  FTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLE 542
                D P+ N  + S++    QVE++      P ++  +++     Q +P    +  D +
Sbjct: 755  ----DKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAIN-----QDAP----VIEDSD 801

Query: 543  DNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYEEYA 722
             +                    P +++ EE      +L+                 EE  
Sbjct: 802  SSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVA---------------EEIE 846

Query: 723  SCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKKPIGCKW 902
              A       EP+TY  A+ S     W  AM +E++SL KN TWE VK+PK KKPI CKW
Sbjct: 847  GNA-------EPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKW 899

Query: 903  VFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILLALVAQY 1082
            +F  K+G+  S    D  RYKARLVAKGY+Q  G+D+N++FSP++KH+SIR LL +VA +
Sbjct: 900  IFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMH 955

Query: 1083 DMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRF 1262
            D ELEQMDVKTAFLHG+LEEDIYM QP+GFVV GKE+ VC+LKKSLYGLKQSPRQWY RF
Sbjct: 956  DYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRF 1015

Query: 1263 DRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQLSKEFE 1442
            D FM+ Q+++RS YD CVY K ++ GS IYLLLYVDDMLIAAK K +I  LK QLS EF 
Sbjct: 1016 DSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFG 1074

Query: 1443 MKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKP 1580
            MKDLGAAKKILGM I+R+R  G+L +SQ+ Y++KVL RF M D KP
Sbjct: 1075 MKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKP 1120


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  486 bits (1250), Expect = e-134
 Identities = 271/560 (48%), Positives = 350/560 (62%), Gaps = 6/560 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TL+EK R MR +AGL + +WAEA N ACYLINRSPS AI  K   EVW+G P  Y NLR+
Sbjct: 563  TLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRV 622

Query: 183  FGCPAYYHITED---KIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA 353
            FGC AY HI +D   K+  ++++ +F+G+ +GVKGY+LW +  +K V+S           
Sbjct: 623  FGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVIS----------- 671

Query: 354  NVQRFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQG--EI 527
                              RDV  D+ E I+   ++P     SV+DS+       QG  E+
Sbjct: 672  ------------------RDVVFDEREAISISLAKP-----SVADSEAQVEQNEQGNDEV 708

Query: 528  STDLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFG 707
            + +  +++                   PI Q  E  ++   S+A              FG
Sbjct: 709  AIEEPEHQQQPTVMAQVEQSPQRGQNSPIPQAPESFKR---SIA-LDKPKRNRKPIQRFG 764

Query: 708  YE-EYASCAFIAYDEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGKK 884
            +E E      ++  + +PTTY  A+ S  SA W  AM+EE++SLHKN  WELV  PK +K
Sbjct: 765  FEPEEDVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERK 824

Query: 885  PIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRILL 1064
             +GCKWVF  K+GI +     D + YKARLVAKGY+QKEGVDY+EIFSPVVKHTSIR+LL
Sbjct: 825  LVGCKWVFRKKEGIHED----DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLL 880

Query: 1065 ALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSPR 1244
            ++ AQYDME+EQMDVKTAFLHGDLEEDIYMSQP+GFV  GKE+ VC+LKKSLYGLKQSPR
Sbjct: 881  SIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPR 940

Query: 1245 QWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKDQ 1424
            QWY  FD +M+K  Y R +YD CVYY     G  I LLLYVDDMLIA +    I  LK +
Sbjct: 941  QWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKK 1000

Query: 1425 LSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGAQ 1604
            L  EF+MKDLGAA+KILG+ I RDR  G++ +SQ  Y+ K+L RF M+++K V+ PL A 
Sbjct: 1001 LGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAH 1060

Query: 1605 FRLTALQSPTTEVEKEYMAN 1664
            FRL+A Q P+ + E + M N
Sbjct: 1061 FRLSAEQRPSDQKEIDMMKN 1080


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  468 bits (1204), Expect = e-129
 Identities = 266/562 (47%), Positives = 333/562 (59%), Gaps = 10/562 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            T+++K R M S +G+ K +WAEA +TA YLINRSPSTAI    P E WTG      +LR 
Sbjct: 584  TIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRK 643

Query: 183  FGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMANVQ 362
            FGC AY H  + K+  R+ K IF  YPEGVKGY++W L  KK V+SR+V F E VM    
Sbjct: 644  FGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVM---- 699

Query: 363  RFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEISTDLE 542
             F      ++N+    D++D        R +  + D E        Q + +  E +T   
Sbjct: 700  -FKDLKGDSQNTISESDLED-------LRVNPDMNDQEFTDQGGATQDNSNPSEATTS-- 749

Query: 543  DNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDG------LSLAEXXXXXXXXXXXXXF 704
                                  P    DEE +++       LS  +              
Sbjct: 750  ---------------HNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANP 794

Query: 705  GYEEYASCAFIAYDEE----EPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVP 872
             Y E     F  Y E+    EP +Y+ AL      +W  AM EE+ S+ KN TW+LV  P
Sbjct: 795  KYNESNMVGFAYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKP 854

Query: 873  KGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSI 1052
            +  K IGC+WVF  K GIP     V+  R+ ARLVAKG+ QKEGVDYNEIFSPVVKH SI
Sbjct: 855  EKVKLIGCRWVFTRKAGIPG----VEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSI 910

Query: 1053 RILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLK 1232
            R LL++V  Y+MEL+QMDVKTAFLHG LEE+IYM+QP+GF +    + VC LK+SLYGLK
Sbjct: 911  RYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLK 970

Query: 1233 QSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDL 1412
            QSPRQW LRFD FM   +Y RS YD CVY+KK N  +YIYLLLYVDDMLIA+ +K +++ 
Sbjct: 971  QSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNE 1030

Query: 1413 LKDQLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTP 1592
            LK  LS+EFEMKDLG AKKILGM ISRDR  G LT+SQ  YV+KVL  F M ++KPV+TP
Sbjct: 1031 LKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTP 1090

Query: 1593 LGAQFRLTALQSPTTEVEKEYM 1658
            LG  F+L A      E + E M
Sbjct: 1091 LGIHFKLKAATDKEYEEQFERM 1112


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  466 bits (1198), Expect = e-128
 Identities = 262/525 (49%), Positives = 336/525 (64%), Gaps = 10/525 (1%)
 Frame = +3

Query: 117  IGLKTPMEVWTGTPTTYDNLRIFGCPAYYHITEDKIGKRAMKSIFLGYPEGVKGYRLWCL 296
            I  KTP+EVW+G+P  Y +LR+FGC AY H+   K+  RA+K IFLGYP GVK Y+LWC 
Sbjct: 519  IDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCP 578

Query: 297  TTKKIVVSRDVKFDETVMANVQRFTGWDSPTENSEL-SRDVDDDQVEYIAPRTSRPIRDP 473
             TKK+V+SR+V F E+VM +       D P+ N  + S++    QVE++      P ++ 
Sbjct: 579  KTKKVVISRNVVFHESVMLH-------DKPSTNVPVESQEKASVQVEHLISSGHAPEKED 631

Query: 474  ESV---------SDSDMGQTSPSQGEISTDLEDNRTDLDXXXXXXXXXXXXXXXPIQQHD 626
             ++         SDS   Q SP +       + N                    P +++ 
Sbjct: 632  VAINQDASVIEDSDSSAVQQSPKRSIAKDKPKRN------------------IKPPRRYI 673

Query: 627  EEDQQDGLSLAEXXXXXXXXXXXXXFGYEEYASCAFIAYDEEEPTTYRAALRSSHSAEWK 806
            EE      +L+                 EE    A       EP+TY  A+ S     W 
Sbjct: 674  EEANIVAYALSVA---------------EEIEGNA-------EPSTYSEAIVSDGCNRWI 711

Query: 807  QAMSEEIQSLHKNKTWELVKVPKGKKPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKG 986
             AM +E++SL KN TWELVK+PK KKPI CKW+F  K G+  S    D  RYKARLVAKG
Sbjct: 712  TAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPS----DEARYKARLVAKG 767

Query: 987  YAQKEGVDYNEIFSPVVKHTSIRILLALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPD 1166
            Y+Q  G+D+N++FSPV+KH+SIR LL++VA +D ELEQMDVKTAFLHG+LEEDIYM QP+
Sbjct: 768  YSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPE 827

Query: 1167 GFVVAGKEDHVCKLKKSLYGLKQSPRQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSY 1346
            GFVV GKE+ V +LKKSLYGLKQSPRQWY RFD FM  Q+++RS YD CVY K ++ GS 
Sbjct: 828  GFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVD-GSS 886

Query: 1347 IYLLLYVDDMLIAAKSKYDIDLLKDQLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQ 1526
            IYLLLYVDDMLIAAK K +I+ LK QLS EFEMKDLGAAKKILGM I+R+R  G+L +SQ
Sbjct: 887  IYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQ 946

Query: 1527 RDYVEKVLSRFGMSDSKPVTTPLGAQFRLTALQSPTTEVEKEYMA 1661
            + Y+EKVL RF M D+KPV+TPL A FRL++   P ++ + EYM+
Sbjct: 947  KGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMS 991


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  464 bits (1195), Expect = e-128
 Identities = 255/560 (45%), Positives = 343/560 (61%), Gaps = 7/560 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TLLE+ R M   AG++K +WAEAV TACY+INRSPSTAI LKTPME+W G P  Y +L +
Sbjct: 591  TLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHV 650

Query: 183  FGCPAY--YHITE-DKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA 353
            FGCP Y  Y+  E  K+  ++ K IFLGY + VKGYRLW  T +K+VVSRDV F E  + 
Sbjct: 651  FGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ 710

Query: 354  NVQRFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEIST 533
            + Q+         N   S++    Q+E             E   +SD  +  P   E   
Sbjct: 711  SKQK---------NDSTSKETAIVQME-------------EKSKESDSSEAEPVHEEQEP 748

Query: 534  DLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYE 713
            D  +N                     +++   + Q+                        
Sbjct: 749  DDVNNG--------------------VRRSTRQTQKPSWQ-------------------S 769

Query: 714  EYASCAFIAY----DEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGK 881
            +Y   +  AY    +E EP+T+  AL  S +++W  AM EE+++LH+NKTWELV++PKG+
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGR 829

Query: 882  KPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRIL 1061
            K IG KWV+ +K    D    V+  RY+ARLV KGYAQKEG+D+NEIFSPVV+ T+IR++
Sbjct: 830  KAIGNKWVYKIKR---DGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 1062 LALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSP 1241
            LA+ A  D+ LEQ+DVKTAFLHG+LEE+IYM QP+GF   GKE+ VC+L KSLYGLKQ+P
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAP 944

Query: 1242 RQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKD 1421
            R WY RFD F++   Y R   DHC YYK+ +   +I LLLYVDDML+   +K  +  LK 
Sbjct: 945  RCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKA 1004

Query: 1422 QLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGA 1601
            QL++EF+MKDLG A KILGM I RDRK  ++ +SQ++Y+ KVL RF M D KP++TPL  
Sbjct: 1005 QLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPV 1064

Query: 1602 QFRLTALQSPTTEVEKEYMA 1661
             F+L++  SP+ E E+  M+
Sbjct: 1065 NFKLSSGMSPSNEAERMEMS 1084


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  461 bits (1187), Expect = e-127
 Identities = 253/560 (45%), Positives = 341/560 (60%), Gaps = 7/560 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TLLE+ R M   AG++K +WAEAV TACY+INRSPSTAI LKTPME+W G P  Y +L +
Sbjct: 591  TLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHV 650

Query: 183  FGCPAY--YHITE-DKIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA 353
            FGCP Y  Y+  E  K+  ++ K IFLGY + VKGYRLW  T +K+VVSRDV F E  + 
Sbjct: 651  FGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ 710

Query: 354  NVQRFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEIST 533
            + Q+         N   S++    Q+E             E   +SD  +          
Sbjct: 711  SEQK---------NDSTSKETAIVQME-------------EKSKESDSSEAESVH----- 743

Query: 534  DLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYE 713
                                       ++ + +D  DG+  +                  
Sbjct: 744  ---------------------------EEQEPDDVNDGVRRSTRQTQKPSWQ-------S 769

Query: 714  EYASCAFIAY----DEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGK 881
            +Y   +  AY    +E EP+T+  AL  S +++W  AM EE+++LH+NKTWELV++PKG+
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGR 829

Query: 882  KPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRIL 1061
            K IG KWV+ +K    D    V+  RY+ARLV KGYAQKEG+D+NEIFSPVV+ T+IR++
Sbjct: 830  KAIGNKWVYKIKR---DGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 1062 LALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSP 1241
            LA+ A  D+ LEQ+DVKTAFLHG+LEE+IYM QP+GF   GKE+ VC+L KSLYGLKQ+P
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAP 944

Query: 1242 RQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKD 1421
            R WY RFD F++   Y R   DHC YYK+ +   +I LLLYVDDML+   +K  +  LK 
Sbjct: 945  RCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKA 1004

Query: 1422 QLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGA 1601
            QL++EF+MKDLG A KILGM I RDRK  ++ +SQ++Y+ KVL RF M D KP++TPL  
Sbjct: 1005 QLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPV 1064

Query: 1602 QFRLTALQSPTTEVEKEYMA 1661
             F+L++  SP+ E E+  M+
Sbjct: 1065 NFKLSSGMSPSNEAERMEMS 1084


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  460 bits (1184), Expect = e-127
 Identities = 252/560 (45%), Positives = 340/560 (60%), Gaps = 7/560 (1%)
 Frame = +3

Query: 3    TLLEKARCMRSNAGLSKFWWAEAVNTACYLINRSPSTAIGLKTPMEVWTGTPTTYDNLRI 182
            TLLE+ R M   AG++K +WAEA  TACY+INRSPSTAI LKTPME+W G P  Y +L +
Sbjct: 591  TLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHV 650

Query: 183  FGCPAY--YHITED-KIGKRAMKSIFLGYPEGVKGYRLWCLTTKKIVVSRDVKFDETVMA 353
            FGCP Y  Y+  E  K+  ++ K IFLGY + VKGYRLW  T +K+VVSRDV F E  + 
Sbjct: 651  FGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ 710

Query: 354  NVQRFTGWDSPTENSELSRDVDDDQVEYIAPRTSRPIRDPESVSDSDMGQTSPSQGEIST 533
            + Q+         N   S++    Q+E             E   +SD  +          
Sbjct: 711  SEQK---------NDSTSKETAIVQME-------------EKSKESDSSEAESVH----- 743

Query: 534  DLEDNRTDLDXXXXXXXXXXXXXXXPIQQHDEEDQQDGLSLAEXXXXXXXXXXXXXFGYE 713
                                       ++ + +D  DG+  +                  
Sbjct: 744  ---------------------------EEQEPDDVNDGVRRSTRQTQKPSWQ-------S 769

Query: 714  EYASCAFIAY----DEEEPTTYRAALRSSHSAEWKQAMSEEIQSLHKNKTWELVKVPKGK 881
            +Y   +  AY    +E EP+T+  AL  S +++W  AM EE+++LH+NKTWELV++PKG+
Sbjct: 770  DYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGR 829

Query: 882  KPIGCKWVFVVKDGIPDSKGIVDGVRYKARLVAKGYAQKEGVDYNEIFSPVVKHTSIRIL 1061
            K IG KWV+ +K    D    V+  RY+ARLV KGYAQKEG+D+NEIFSPVV+ T+IR++
Sbjct: 830  KAIGNKWVYKIKR---DGNDQVE--RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVV 884

Query: 1062 LALVAQYDMELEQMDVKTAFLHGDLEEDIYMSQPDGFVVAGKEDHVCKLKKSLYGLKQSP 1241
            LA+ A  D+ LEQ+DVKTAFLHG+LEE+IYM QP+GF   GKE+ VC+L KSLYGLKQ+P
Sbjct: 885  LAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAP 944

Query: 1242 RQWYLRFDRFMVKQRYKRSEYDHCVYYKKLNSGSYIYLLLYVDDMLIAAKSKYDIDLLKD 1421
            R WY RFD F++   Y R   DHC YYK+ +   +I LLLYVDDML+   +K  +  LK 
Sbjct: 945  RCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKA 1004

Query: 1422 QLSKEFEMKDLGAAKKILGMVISRDRKLGRLTVSQRDYVEKVLSRFGMSDSKPVTTPLGA 1601
            QL++EF+MKDLG A KILGM I RDRK  ++ +SQ++Y+ KVL RF M D KP++TPL  
Sbjct: 1005 QLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPV 1064

Query: 1602 QFRLTALQSPTTEVEKEYMA 1661
             F+L++  SP+ E E+  M+
Sbjct: 1065 NFKLSSGMSPSNEAERMEMS 1084