BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00016583
         (693 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34982.3| unnamed protein product [Vitis vinifera]              234   2e-59
ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron sp...   234   2e-59
ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron sp...   210   3e-52
ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron sp...   209   9e-52
ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citr...   207   2e-51
ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron sp...   207   3e-51
ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron sp...   206   5e-51
ref|XP_006482476.1| PREDICTED: chloroplastic group IIA intron sp...   205   1e-50
emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]   198   1e-48
gb|EYU44699.1| hypothetical protein MIMGU_mgv1a000630mg [Mimulus...   196   5e-48
ref|XP_007031356.1| CRM family member 2, putative isoform 2 [The...   190   4e-46
ref|XP_007031355.1| CRM family member 2, putative isoform 1 [The...   190   4e-46
gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitat...   180   3e-43
ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron sp...   177   2e-42
ref|XP_002517407.1| conserved hypothetical protein [Ricinus comm...   176   7e-42
ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron sp...   174   2e-41
dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]    172   1e-40
ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Caps...   169   1e-39
gb|EMT30293.1| Chloroplastic group IIA intron splicing facilitat...   167   3e-39
ref|XP_004489340.1| PREDICTED: chloroplastic group IIA intron sp...   167   4e-39

>emb|CBI34982.3| unnamed protein product [Vitis vinifera]
          Length = 1028

 Score =  234 bits (597), Expect = 2e-59
 Identities = 138/266 (51%), Positives = 174/266 (65%), Gaps = 36/266 (13%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AII+YRGKNY+RPASLRPQTLLNK+EA+KRSLEAQRRESLKLHVL LTRN+DELK
Sbjct: 683  VSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDELK 742

Query: 511  TQLA---VDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKSLEIIQQDNQI 341
             QL     DKETNS + +++  L L  +E+  AD   I+S+DG+D S+ SL+    D +I
Sbjct: 743  HQLVSRIKDKETNSKQLVDKSRLHL-ARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801

Query: 340  DLSSNYEDETDKLELKSPSESVLEHTSLN------------------------------G 251
            D  S  + +TD+   +  SESVL+    N                               
Sbjct: 802  DFPSMCDSDTDEANPEPSSESVLKEIETNVLTDMNEEGECTTCSEDLVSQGETSCYAIVN 861

Query: 250  DNGTKQPLVEPSNKELEPSIHKAIENRSN---IRGAPLSNRDRLLLRKQALMMKKRPVLA 80
               T +  V+ S  E +P + + ++ RSN    R APLSNR+RLLLRKQAL MKKRPV+A
Sbjct: 862  HEETMESSVKSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKRPVIA 921

Query: 79   VGKSNIVTGVAKTIKEHFKKYPLAIV 2
            VG+SNIVTGVAKTIK HF+K+PLAIV
Sbjct: 922  VGRSNIVTGVAKTIKAHFQKHPLAIV 947


>ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Vitis vinifera]
          Length = 1044

 Score =  234 bits (597), Expect = 2e-59
 Identities = 138/266 (51%), Positives = 174/266 (65%), Gaps = 36/266 (13%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AII+YRGKNY+RPASLRPQTLLNK+EA+KRSLEAQRRESLKLHVL LTRN+DELK
Sbjct: 683  VSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSLEAQRRESLKLHVLRLTRNIDELK 742

Query: 511  TQLA---VDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKSLEIIQQDNQI 341
             QL     DKETNS + +++  L L  +E+  AD   I+S+DG+D S+ SL+    D +I
Sbjct: 743  HQLVSRIKDKETNSKQLVDKSRLHL-ARERYGADVILIHSSDGMDSSRDSLQTSHNDKRI 801

Query: 340  DLSSNYEDETDKLELKSPSESVLEHTSLN------------------------------G 251
            D  S  + +TD+   +  SESVL+    N                               
Sbjct: 802  DFPSMCDSDTDEANPEPSSESVLKEIETNVLTDMNEEGECTTCSEDLVSQGETSCYAIVN 861

Query: 250  DNGTKQPLVEPSNKELEPSIHKAIENRSN---IRGAPLSNRDRLLLRKQALMMKKRPVLA 80
               T +  V+ S  E +P + + ++ RSN    R APLSNR+RLLLRKQAL MKKRPV+A
Sbjct: 862  HEETMESSVKSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKRPVIA 921

Query: 79   VGKSNIVTGVAKTIKEHFKKYPLAIV 2
            VG+SNIVTGVAKTIK HF+K+PLAIV
Sbjct: 922  VGRSNIVTGVAKTIKAHFQKHPLAIV 947


>ref|XP_006482478.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X3 [Citrus sinensis]
          Length = 1062

 Score =  210 bits (535), Expect = 3e-52
 Identities = 135/298 (45%), Positives = 170/298 (57%), Gaps = 68/298 (22%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKE------------------------KQRADSPSIN 404
             QL  DKE NS+++++E  LPL  +E                        +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQIDLSSNYEDETDKLELKSPSESVLEHTSLN---------- 254
            SND  D +      IQQD Q +  ++     +++E KS  +SV + + LN          
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGV 850

Query: 253  --------------GDNGTKQPLVEPS------NKELEPSIHKA--------------IE 176
                           DN  ++  +E +      N+ +E S   A              + 
Sbjct: 851  ASGTSSCPDNSMCSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVW 910

Query: 175  NRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            N +N R   LSNRDRLLLRKQAL MKKRPVLAVG+SNIVTGVAK IK HF+KYPLAIV
Sbjct: 911  NENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIV 968


>ref|XP_006482481.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X6 [Citrus sinensis]
          Length = 1031

 Score =  209 bits (531), Expect = 9e-52
 Identities = 132/275 (48%), Positives = 166/275 (60%), Gaps = 45/275 (16%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKE------------------------KQRADSPSIN 404
             QL  DKE NS+++++E  LPL  +E                        +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQID-LSSNYEDETDKLELKSPSESVLEHTSLNGDNGTKQPL 227
            SND  D +      IQQD Q + L+ N         + S + S  +++  + DN  ++  
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHN--------GVASGTSSCPDNSMCSSDNEPRESS 842

Query: 226  VEPS------NKELEPSIHKA--------------IENRSNIRGAPLSNRDRLLLRKQAL 107
            +E +      N+ +E S   A              + N +N R   LSNRDRLLLRKQAL
Sbjct: 843  IESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQAL 902

Query: 106  MMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
             MKKRPVLAVG+SNIVTGVAK IK HF+KYPLAIV
Sbjct: 903  RMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIV 937


>ref|XP_006431007.1| hypothetical protein CICLE_v10013715mg [Citrus clementina]
            gi|557533064|gb|ESR44247.1| hypothetical protein
            CICLE_v10013715mg [Citrus clementina]
          Length = 1062

 Score =  207 bits (528), Expect = 2e-51
 Identities = 133/298 (44%), Positives = 169/298 (56%), Gaps = 68/298 (22%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPL------------------------KVKEKQRADSPSIN 404
             QL  DKE NS+++++E  LPL                        K + +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVGSIIFLMIWKSSNIPEIVFGIFFKARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQIDLSSNYEDETDKLELKSPSESVLEHTSLN---------- 254
            SND  D +      IQQD Q +  ++     +++E +S  +SV + + LN          
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHNGISFNEIESESSLKSVSKESQLNMIADFFAEGV 850

Query: 253  --------------GDNGTKQPLVEPS------NKELEPSIHKA--------------IE 176
                           DN  ++  +E +      N+ +E     A              + 
Sbjct: 851  ASGTPSCPDNSMCSSDNEPRESSIESAKSRSSENEPIEQCFELAKGRSGLSTPIGTGNVW 910

Query: 175  NRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            N +N R   LSNRDRLLLRKQAL MKKRPVLAVG+SNIVTGVAK IK HF+KYPLAIV
Sbjct: 911  NENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIV 968


>ref|XP_006482480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X5 [Citrus sinensis]
          Length = 1045

 Score =  207 bits (527), Expect = 3e-51
 Identities = 132/281 (46%), Positives = 167/281 (59%), Gaps = 51/281 (18%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKE------------------------KQRADSPSIN 404
             QL  DKE NS+++++E  LPL  +E                        +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQID-LSSNYEDETDKLELKSPSESVLEHTSL------NGDN 245
            SND  D +      IQQD Q + L+ N           +  + V+E+ ++      + DN
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHNGVASGTSSCPDNSMQEVMEYNTIVDAEQCSSDN 850

Query: 244  GTKQPLVEPS------NKELEPSIHKA--------------IENRSNIRGAPLSNRDRLL 125
              ++  +E +      N+ +E S   A              + N +N R   LSNRDRLL
Sbjct: 851  EPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSNRDRLL 910

Query: 124  LRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            LRKQAL MKKRPVLAVG+SNIVTGVAK IK HF+KYPLAIV
Sbjct: 911  LRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIV 951


>ref|XP_006482479.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X4 [Citrus sinensis]
          Length = 1050

 Score =  206 bits (525), Expect = 5e-51
 Identities = 131/286 (45%), Positives = 170/286 (59%), Gaps = 56/286 (19%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKE------------------------KQRADSPSIN 404
             QL  DKE NS+++++E  LPL  +E                        +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQIDLSSNYEDETDKLELKSPS------ESVLEHTSL----- 257
            SND  D +      IQQD Q +  ++ +   + +   + S      + V+E+ ++     
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHNDFFAEGVASGTSSCPDNSMQEVMEYNTIVDAEQ 850

Query: 256  -NGDNGTKQPLVEPS------NKELEPSIHKA--------------IENRSNIRGAPLSN 140
             + DN  ++  +E +      N+ +E S   A              + N +N R   LSN
Sbjct: 851  CSSDNEPRESSIESAKSRSSENEPIEQSFELAKGRSGLSTPIGTGNVWNENNSRAIQLSN 910

Query: 139  RDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            RDRLLLRKQAL MKKRPVLAVG+SNIVTGVAK IK HF+KYPLAIV
Sbjct: 911  RDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAIKAHFEKYPLAIV 956


>ref|XP_006482476.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568857850|ref|XP_006482477.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 1076

 Score =  205 bits (521), Expect = 1e-50
 Identities = 135/312 (43%), Positives = 170/312 (54%), Gaps = 82/312 (26%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKG+AII+YRGKNYERPA LRP+TLL K+EAMKRSLEAQRR+SLKLHVLELTRN+++LK
Sbjct: 671  VNKGYAIILYRGKNYERPACLRPKTLLTKREAMKRSLEAQRRQSLKLHVLELTRNIEKLK 730

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKE------------------------KQRADSPSIN 404
             QL  DKE NS+++++E  LPL  +E                        +  AD  S  
Sbjct: 731  LQLVKDKEANSLETIDESILPLVKEEIGDMQPAECMRSDTSHEVNVQARGECGADLTSTE 790

Query: 403  SNDGVDVSKKSLEIIQQDNQIDLSSNYEDETDKLELKSPSESVLEHTSLN---------- 254
            SND  D +      IQQD Q +  ++     +++E KS  +SV + + LN          
Sbjct: 791  SNDTGDATIDGPPAIQQDKQTESLTHNGISINEIESKSSLKSVSKESQLNMIADFFAEGV 850

Query: 253  ----------------------------GDNGTKQPLVEPS------NKELEPSIHKA-- 182
                                         DN  ++  +E +      N+ +E S   A  
Sbjct: 851  ASGTSSCPDNSMQEVMEYNTIVDAEQCSSDNEPRESSIESAKSRSSENEPIEQSFELAKG 910

Query: 181  ------------IENRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTI 38
                        + N +N R   LSNRDRLLLRKQAL MKKRPVLAVG+SNIVTGVAK I
Sbjct: 911  RSGLSTPIGTGNVWNENNSRAIQLSNRDRLLLRKQALRMKKRPVLAVGRSNIVTGVAKAI 970

Query: 37   KEHFKKYPLAIV 2
            K HF+KYPLAIV
Sbjct: 971  KAHFEKYPLAIV 982


>emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
          Length = 1399

 Score =  198 bits (504), Expect = 1e-48
 Identities = 124/263 (47%), Positives = 159/263 (60%), Gaps = 33/263 (12%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AII+YRGKNY+RPASLRPQTLLNK+EAMKRSLEAQRRE         +RN D   
Sbjct: 1058 VSKGYAIIMYRGKNYKRPASLRPQTLLNKREAMKRSLEAQRRE--------FSRNKD--- 1106

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKSLEIIQQDNQIDLS 332
                  KETNS + +++  L L  +E+  AD   I+S+DG+D S+ SL+    D +ID  
Sbjct: 1107 ------KETNSKQLVDKSRLHL-ARERYGADVILIHSSDGMDSSRDSLQTSHNDKRIDFP 1159

Query: 331  SNYEDETDKLELKSPSESVLEHTSLN------------------------------GDNG 242
            S  + +TD+   +  SESVL+    N                                  
Sbjct: 1160 SMCDSDTDEANPEPSSESVLKEIETNVLTDMNEEEECATCSDDLVSQGQTSCYAIVNHEE 1219

Query: 241  TKQPLVEPSNKELEPSIHKAIENRSN---IRGAPLSNRDRLLLRKQALMMKKRPVLAVGK 71
            T +  V+ S  E +P + + ++ RSN    R APLSNR+RLLLRKQAL MKKRPV+AVG+
Sbjct: 1220 TMESSVKSSKNEFKPPVQRPVDTRSNEMPFRAAPLSNRERLLLRKQALRMKKRPVIAVGR 1279

Query: 70   SNIVTGVAKTIKEHFKKYPLAIV 2
            SNIVTGVAKTIK HF+K+PLAIV
Sbjct: 1280 SNIVTGVAKTIKAHFQKHPLAIV 1302


>gb|EYU44699.1| hypothetical protein MIMGU_mgv1a000630mg [Mimulus guttatus]
          Length = 1040

 Score =  196 bits (499), Expect = 5e-48
 Identities = 123/269 (45%), Positives = 164/269 (60%), Gaps = 39/269 (14%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG  IIVYRGKNY RPASLRPQTLL+K+EAMKRSLEAQRRESLKLHVL+L++N+DELK
Sbjct: 667  VSKGFDIIVYRGKNYTRPASLRPQTLLSKREAMKRSLEAQRRESLKLHVLKLSKNIDELK 726

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKSLEIIQQDNQIDLS 332
             ++A D+ TN     E+L L   V+E    D+ + +  + + +S+ ++ I Q+D   D+S
Sbjct: 727  LKMAKDENTNRPHLTEDLELGF-VRESHETDATNKDPEEPMHISEDTVHIAQKDLPGDVS 785

Query: 331  S------NYEDETDKLELKSPS------------------ESVLEHTSLNGDNGTKQPLV 224
                   NY  ET + E++  S                  E V    S +  N +    +
Sbjct: 786  LQSEVKVNYLFETTEAEVQPTSLSNEGNSFSDKNNQIGNMEFVRSPRSQDRRNSSPSTYI 845

Query: 223  EPS------------NKELEPSIHKAIENRSNI---RGAPLSNRDRLLLRKQALMMKKRP 89
             P             N ++EPS  K ++ R ++   R   LSN++RLLLRKQAL MKK P
Sbjct: 846  RPQTGRRKSDGGGYRNVDIEPSGQKPMKERPSLMPSRSVQLSNKERLLLRKQALRMKKIP 905

Query: 88   VLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            +LAVGK N+VTGV KTIKEHF+K+PLAIV
Sbjct: 906  ILAVGKRNVVTGVTKTIKEHFEKHPLAIV 934


>ref|XP_007031356.1| CRM family member 2, putative isoform 2 [Theobroma cacao]
            gi|508710385|gb|EOY02282.1| CRM family member 2, putative
            isoform 2 [Theobroma cacao]
          Length = 1045

 Score =  190 bits (482), Expect = 4e-46
 Identities = 129/296 (43%), Positives = 169/296 (57%), Gaps = 66/296 (22%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AIIVYRGKNYERP SLRPQTLL K++AMKRSLE QRR+SLKLH+L LTRNV++L+
Sbjct: 663  VSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRKSLKLHILNLTRNVNDLE 722

Query: 511  TQLAVDKETNSIKSLEELTLPL--------------------------KVKEKQRADSPS 410
             QL VDKE NS++++E+ +LPL                           V+ + +  S S
Sbjct: 723  HQLVVDKEANSMQTVEQSSLPLVQEELETLQSVEYTGSVIECPASSGGHVESRDKDGSES 782

Query: 409  INSNDGVDVSKKSLEIIQQDNQIDLSSNYED-ETDKLELKSPSESVLE----------HT 263
             +  +   V+  S+    +   ++ SS ++  E  K E +  +ESV            HT
Sbjct: 783  TSMKNDKMVATISIRQPSKQEFMEPSSIHDGFENHKTESEFSAESVNRKSHATELRALHT 842

Query: 262  SLN--------------------------GDNGTKQPLVEPSNKELEPSIHKAIENRSNI 161
             +                            +NG  + LVE S   L+ SI  A+EN SN 
Sbjct: 843  QVEMVDTSYPDNLMEEIDDSGAINAEHGVSNNGPMESLVE-SASMLDVSISSAVENVSNK 901

Query: 160  RGAP---LSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
              +    LSN+DRLLLRKQAL MKKRPVLAVG+SNIVTGVAK I+ HF+K+PLAIV
Sbjct: 902  MASTANFLSNKDRLLLRKQALKMKKRPVLAVGRSNIVTGVAKAIRAHFQKHPLAIV 957


>ref|XP_007031355.1| CRM family member 2, putative isoform 1 [Theobroma cacao]
            gi|508710384|gb|EOY02281.1| CRM family member 2, putative
            isoform 1 [Theobroma cacao]
          Length = 1087

 Score =  190 bits (482), Expect = 4e-46
 Identities = 129/296 (43%), Positives = 169/296 (57%), Gaps = 66/296 (22%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AIIVYRGKNYERP SLRPQTLL K++AMKRSLE QRR+SLKLH+L LTRNV++L+
Sbjct: 705  VSKGYAIIVYRGKNYERPTSLRPQTLLTKRQAMKRSLEEQRRKSLKLHILNLTRNVNDLE 764

Query: 511  TQLAVDKETNSIKSLEELTLPL--------------------------KVKEKQRADSPS 410
             QL VDKE NS++++E+ +LPL                           V+ + +  S S
Sbjct: 765  HQLVVDKEANSMQTVEQSSLPLVQEELETLQSVEYTGSVIECPASSGGHVESRDKDGSES 824

Query: 409  INSNDGVDVSKKSLEIIQQDNQIDLSSNYED-ETDKLELKSPSESVLE----------HT 263
             +  +   V+  S+    +   ++ SS ++  E  K E +  +ESV            HT
Sbjct: 825  TSMKNDKMVATISIRQPSKQEFMEPSSIHDGFENHKTESEFSAESVNRKSHATELRALHT 884

Query: 262  SLN--------------------------GDNGTKQPLVEPSNKELEPSIHKAIENRSNI 161
             +                            +NG  + LVE S   L+ SI  A+EN SN 
Sbjct: 885  QVEMVDTSYPDNLMEEIDDSGAINAEHGVSNNGPMESLVE-SASMLDVSISSAVENVSNK 943

Query: 160  RGAP---LSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
              +    LSN+DRLLLRKQAL MKKRPVLAVG+SNIVTGVAK I+ HF+K+PLAIV
Sbjct: 944  MASTANFLSNKDRLLLRKQALKMKKRPVLAVGRSNIVTGVAKAIRAHFQKHPLAIV 999


>gb|EXC45069.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
            notabilis]
          Length = 966

 Score =  180 bits (457), Expect = 3e-43
 Identities = 113/231 (48%), Positives = 148/231 (64%), Gaps = 2/231 (0%)
 Frame = -3

Query: 688  NKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELKT 509
            +KG+AIIVYRGKNYERPASLRPQTLL K+ AMKRS+EAQRR+SLKLHVL+LT+N+D+LK 
Sbjct: 657  SKGYAIIVYRGKNYERPASLRPQTLLTKRAAMKRSIEAQRRQSLKLHVLKLTKNIDDLKL 716

Query: 508  QLAVDKETNSIKSLEELTLPLK--VKEKQRADSPSINSNDGVDVSKKSLEIIQQDNQIDL 335
            QL  DK+ N ++  +E +  ++  V   Q A+S S+++    +V   SL      ++   
Sbjct: 717  QLVKDKQRNKMQPADESSNLVRDEVNGIQSAESLSLDA----EVKSGSLSFPTTSHEEMS 772

Query: 334  SSNYEDETDKLELKSPSESVLEHTSLNGDNGTKQPLVEPSNKELEPSIHKAIENRSNIRG 155
            +          +     E  +E ++ +  NG     +EPS     P I     N    R 
Sbjct: 773  NGMNSSAAVGAQHDVSDEEEVESSAKSDKNG-----LEPS----VPVIADKGLNEMPSRT 823

Query: 154  APLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
              LSNR+RLLLRKQAL MKKRPVLAVG++NIV+GVAK I  HF+KYPLAIV
Sbjct: 824  IILSNRERLLLRKQALKMKKRPVLAVGRNNIVSGVAKAINAHFQKYPLAIV 874


>ref|XP_006338518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Solanum tuberosum]
          Length = 1049

 Score =  177 bits (450), Expect = 2e-42
 Identities = 129/297 (43%), Positives = 166/297 (55%), Gaps = 67/297 (22%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            VNKGHAIIVYRGKNYERPASLRPQTLL+K+EAMKRS+EAQRR+SLKLHVL+LT+N++ L+
Sbjct: 660  VNKGHAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLKLHVLKLTQNIEALQ 719

Query: 511  TQLAVDKETNSIKSLEELTLPLKV----------KEKQRADSPSINSNDGVD----VSKK 374
            ++LA ++E   I+S + +   + V            +  + SP+ +S D  +     S+K
Sbjct: 720  SRLAKNEEMVHIQSPDIVDRQVPVTGISDAAGGTNYQSSSASPTEDSGDAAEDTDPSSQK 779

Query: 373  SLEI--------IQQDNQIDLSSNYEDET----DKLELKSPSESVLEHT----SLNGDNG 242
             L           QQ+  ID    YE +     D ++ +  S S ++ +    ++N D  
Sbjct: 780  ELSSDSSDTDHNSQQEFPIDPFFQYEGKVEAVGDTIQPEHQSISSIKESKSMFNVNVDQK 839

Query: 241  TKQPLVEPS-------------------NKELEPSIHKAI-------------ENRSNIR 158
            T    V  S                   NK  E    K +               RS   
Sbjct: 840  TFGSAVSESVSKSSRGEVKIHFSETRSFNKPREVDDKKEVSQLPSVKPQQALRSTRSRSE 899

Query: 157  GAP-----LSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
            G P     LSNR+RLLLRKQAL MKK+PVLAVG+SNIVTGVAK IKEHFKKYPLAIV
Sbjct: 900  GMPTRKVQLSNRERLLLRKQALKMKKQPVLAVGRSNIVTGVAKNIKEHFKKYPLAIV 956


>ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
            gi|223543418|gb|EEF44949.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1009

 Score =  176 bits (446), Expect = 7e-42
 Identities = 114/255 (44%), Positives = 153/255 (60%), Gaps = 25/255 (9%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AI+VYRGKNY+RPA LRP TLL+K+EAMKRSLEAQRRESLKLHVL LTRN+++LK
Sbjct: 656  VSKGYAIVVYRGKNYQRPALLRPPTLLSKREAMKRSLEAQRRESLKLHVLRLTRNINDLK 715

Query: 511  TQLAVDKETNSIKSLEELTLPLKVK-----------EKQRADSPSINSNDGVDVSK---- 377
             +L  +         E L++ L  +           E+    +PS+   DG+ + K    
Sbjct: 716  LKLLFNGNGIGRSEFESLSISLSKESHASVNIIQPDEQASQINPSL-LYDGIRIGKNEPE 774

Query: 376  KSLEIIQQDNQIDLSSNYED---ETDKLELKSPSESVLEHTSLNGDNGTKQ-----PLVE 221
             S E + ++    L +       ++      S SE    +  ++ +N   +       VE
Sbjct: 775  SSSESLSKETHASLFTAINGGAVDSTSFPNTSMSEERGSYPCVSAENCVHENKIMGSTVE 834

Query: 220  PSNKELEPSIHKAIENRSNIRGAP--LSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVA 47
             +   LE S+  +    + ++ +   LSNRDRL+LRKQAL MK RPVLAVG+SNIVTGVA
Sbjct: 835  STTTVLEESVSISANEDNEMQSSTICLSNRDRLMLRKQALKMKNRPVLAVGRSNIVTGVA 894

Query: 46   KTIKEHFKKYPLAIV 2
            KTIK HFKKYPLAIV
Sbjct: 895  KTIKAHFKKYPLAIV 909


>ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1053

 Score =  174 bits (442), Expect = 2e-41
 Identities = 103/259 (39%), Positives = 163/259 (62%), Gaps = 29/259 (11%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KGHAII+YRGKNY RP++LRP++LLNK++A+KRS+E QR++SLKLHVL L++N+D L+
Sbjct: 713  VSKGHAIIMYRGKNYHRPSTLRPKSLLNKRDALKRSVEYQRQKSLKLHVLNLSKNIDYLR 772

Query: 511  TQL--------AVDKETNSIKSLEELTLPLKVK--EKQRADSPSINSNDGVDVSKKSLEI 362
             Q+         ++  +NS  +LEE +  +  +  + +  DS S  ++  ++++K  + +
Sbjct: 773  GQMVSFIHENKGINDLSNSSGTLEEKSEEVAPEGFDSEGQDSTSSGTDGTLNLTKSGVPL 832

Query: 361  IQQDNQIDLSSNYED--ETDKLELKSPSESVLEH------------TSLNGDNGTKQ--- 233
              + N++  + + +D  E  +  L   S +V  +             + + DN ++    
Sbjct: 833  DDRQNKLCFNKHKDDSSEASRPCLNESSSTVSSNDLIKYQNRLSSAIACHSDNDSESYSR 892

Query: 232  --PLVEPSNKELEPSIHKAIENRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIV 59
               +V+P     EP + +        R APLSNR+RL+LRKQAL MKKRPVLA+G++N++
Sbjct: 893  DVEIVKPCQALDEPKLDEKCTPYLPFRTAPLSNRERLMLRKQALKMKKRPVLAIGRNNVI 952

Query: 58   TGVAKTIKEHFKKYPLAIV 2
            TGVAKTI+ HFKK+PLAIV
Sbjct: 953  TGVAKTIQTHFKKHPLAIV 971


>dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1070

 Score =  172 bits (435), Expect = 1e-40
 Identities = 105/262 (40%), Positives = 160/262 (61%), Gaps = 32/262 (12%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KGHAII+YRGKNY+RP+SLRP++LLNKK+A+KRS+E QRR+SLKLHVL L++N+D L+
Sbjct: 727  VSKGHAIIMYRGKNYQRPSSLRPKSLLNKKDALKRSVELQRRKSLKLHVLNLSKNIDYLR 786

Query: 511  TQ-------------LAVDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKS 371
             Q             L  +  T+   S E   +  +  E +  +  S  +N  ++ S   
Sbjct: 787  GQLMNSGHENKGMHDLCDNSRTSGETSKEVPEVAPECFEPEGEECSSGGTNGILNTSSSG 846

Query: 370  LEIIQQDNQIDLS--SNYEDETDKLELK-----SPSESVLEH-------TSLNGDNGTKQ 233
            + +    N++ L+   ++  E  +  L      + S++ +E+        + + DNG+++
Sbjct: 847  VWLDDTQNKLCLNGLKDHSSEVSRSCLNEGSNTASSDNQIEYQNRLSFPVACHSDNGSEE 906

Query: 232  -----PLVEPSNKELEPSIHKAIENRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKS 68
                   + PS    EP + +    R   + APLSNR+RL+LRKQAL MKKRPVLA+G++
Sbjct: 907  DSKILKTLGPSQALEEPILDQKHTPRLPSKAAPLSNRERLVLRKQALQMKKRPVLAIGRN 966

Query: 67   NIVTGVAKTIKEHFKKYPLAIV 2
            N++TGVAKTI+ HFKK+PLA+V
Sbjct: 967  NVITGVAKTIRTHFKKHPLAVV 988


>ref|XP_006296749.1| hypothetical protein CARUB_v10015149mg [Capsella rubella]
            gi|482565458|gb|EOA29647.1| hypothetical protein
            CARUB_v10015149mg [Capsella rubella]
          Length = 1021

 Score =  169 bits (427), Expect = 1e-39
 Identities = 113/269 (42%), Positives = 157/269 (58%), Gaps = 39/269 (14%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KG+AIIVYRGKNYERP+ LRPQTLL+K+EA+KRS+EAQRR+SLKLHVL+L+ N+DEL 
Sbjct: 664  VSKGYAIIVYRGKNYERPSCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIDELN 723

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKEKQRADSPSINSND-------GVDVSKKSLEIIQQ 353
             QL  D  TN  +S  E ++ +  + + +   P  +S +        + VS    E  + 
Sbjct: 724  RQLVEDSVTNETRSDGESSMRMVEETENQLIEPENSSEEIELGYSSELSVSSSGEENWED 783

Query: 352  DNQIDL----SSNYEDETDKLELKSPSE----------SVLEHT-SLNGDNGTKQPLVEP 218
            DN+ ++    +S++E + D+  L    E          SVL  T S    +   + + + 
Sbjct: 784  DNEGEVDSFTTSSHEHQEDEPGLSQRHEGNALDSTANISVLVETGSAKASSFHDRSMPQK 843

Query: 217  SNKELEPSIHKA---------------IENRSNIRG--APLSNRDRLLLRKQALMMKKRP 89
            S    E  + K                 E +S   G  A LSNR+RL+LRKQAL MKKRP
Sbjct: 844  SFLHTERKVPKQELGSSTGSGSRVSALTERKSKNDGLVADLSNRERLILRKQALKMKKRP 903

Query: 88   VLAVGKSNIVTGVAKTIKEHFKKYPLAIV 2
              AVG+SN+VTG+A+T+K HF+K PLAIV
Sbjct: 904  PFAVGRSNVVTGLARTLKMHFQKNPLAIV 932


>gb|EMT30293.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Aegilops tauschii]
          Length = 1002

 Score =  167 bits (423), Expect = 3e-39
 Identities = 103/247 (41%), Positives = 150/247 (60%), Gaps = 17/247 (6%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KGHAII+YRGKNY+RP++LRP++LLNKK+A+KRS+E QR +SLKLHVL L++N+D L+
Sbjct: 683  VSKGHAIIMYRGKNYQRPSALRPKSLLNKKDALKRSVELQRHKSLKLHVLNLSKNIDYLR 742

Query: 511  TQLAVDK----------------ETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVS 380
             Q+ V +                 TN I +     +PL   +K+      +  N+  D S
Sbjct: 743  GQMEVPEVAPECFEPEGEECSSGGTNRILNTTRTGVPLDDTQKK------LCLNELKDDS 796

Query: 379  KKSLEIIQQDNQIDLSSNYEDETDKLELKSPSESVLEHTSLNGDNGTKQ-PLVEPSNKEL 203
             ++L     ++    SS+ + E     L  P E    H+    +  +K    + PS    
Sbjct: 797  SEALRPCLIESSSTASSDNQIEYQN-RLSFPVEC---HSDSGSEEDSKVFKTLSPSQALD 852

Query: 202  EPSIHKAIENRSNIRGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFK 23
            EP + +        + APLSNR+RL+LRKQAL +KKRPVLA+G++N++TGVAKTI+ HFK
Sbjct: 853  EPILVQTYTPHLPSKAAPLSNRERLVLRKQALQVKKRPVLAIGRNNVITGVAKTIRTHFK 912

Query: 22   KYPLAIV 2
            K+PLA+V
Sbjct: 913  KHPLAVV 919


>ref|XP_004489340.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Cicer arietinum]
          Length = 834

 Score =  167 bits (422), Expect = 4e-39
 Identities = 117/305 (38%), Positives = 162/305 (53%), Gaps = 75/305 (24%)
 Frame = -3

Query: 691  VNKGHAIIVYRGKNYERPASLRPQTLLNKKEAMKRSLEAQRRESLKLHVLELTRNVDELK 512
            V+KGHAIIVYRGKNY RP+ LRP+TLLNKK+A+KRS+EAQRRE+LKLHVL+L +N++ELK
Sbjct: 452  VSKGHAIIVYRGKNYSRPSCLRPRTLLNKKQALKRSIEAQRREALKLHVLKLDKNINELK 511

Query: 511  TQLAVDKETNSIKSLEELTLPLKVKEKQRADSPSINSNDGVDVSKKSLEIIQQ------- 353
             Q+  D E +S +  E L   L + +K    S SIN N   + S  + + I++       
Sbjct: 512  LQMVKD-EASSKQIAETLRSDLAI-DKHGGSSNSINCNSPKEASVHNQQAIEEQHIELID 569

Query: 352  ---DNQIDLSSNYEDETDKLE------------------LKSPSESVL--------EHTS 260
                N ++ +S+ E   D  +                  + SP E+ +        ++  
Sbjct: 570  GVSSNSLNCNSSKEASVDNQQQAIEEQHIELIDGASSNLISSPEEASVGNQRAIQEQYIE 629

Query: 259  LNGDNGTKQPLVEPS--------------------------NKELEPSI---------HK 185
            L    G +Q   E S                          NK +E S+           
Sbjct: 630  LIDTGGARQGEPESSAGLVHQERQLDEESDSVVDTGHCVSNNKAMEASVASLKSDPEPSA 689

Query: 184  AIENRSNI----RGAPLSNRDRLLLRKQALMMKKRPVLAVGKSNIVTGVAKTIKEHFKKY 17
             + N+S+I    R   LSNR+RLLLR+QAL MKKRP+LA+GKSN VTG+AK IK+HF+K+
Sbjct: 690  PVINKSSIELPSRSLYLSNRERLLLRRQALNMKKRPLLAIGKSNTVTGLAKAIKDHFRKH 749

Query: 16   PLAIV 2
            P  IV
Sbjct: 750  PFVIV 754