BLASTX nr result
ID: Paeonia23_contig00016324
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00016324
(352 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [... 163 3e-38
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 158 9e-37
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob... 155 7e-36
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob... 155 7e-36
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob... 155 7e-36
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 153 2e-35
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 153 2e-35
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub... 150 1e-34
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub... 150 2e-34
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun... 149 3e-34
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n... 147 2e-33
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 145 4e-33
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 143 3e-32
ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutr... 142 6e-32
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a... 140 2e-31
ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phas... 139 3e-31
ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [A... 139 3e-31
ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thalian... 138 9e-31
ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata] gi... 137 2e-30
sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymeras... 135 6e-30
>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1181
Score = 163 bits (412), Expect = 3e-38
Identities = 86/117 (73%), Positives = 92/117 (78%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA+TG+VSTNISESLV+KLFD GME+LV TY L GK KVFLNGE
Sbjct: 532 LSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGE 591
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S LP QVEIKRDEQ +EVRIFSDAGRILRPLLVVEN
Sbjct: 592 WVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVEN 648
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
macrophyllum]
Length = 1019
Score = 158 bits (399), Expect = 9e-37
Identities = 82/117 (70%), Positives = 90/117 (76%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLAITGLVSTNI E ++KL D GME+LV T LLSGK KVFL+G
Sbjct: 359 LSTPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGN 418
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVCG+S +P QVEIKRDEQH+EVR+FSDAGRILRPLLVVEN
Sbjct: 419 WVGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVEN 475
>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 1073
Score = 155 bits (391), Expect = 7e-36
Identities = 82/117 (70%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVSTNI ES+V+KLFD GMEELV T + L GKDKVFLNGE
Sbjct: 524 LSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGE 583
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S P QVEIKRDE EVRIFSD GRILRPLLVV+N
Sbjct: 584 WVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDN 640
>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
isoform 2 [Theobroma cacao]
Length = 961
Score = 155 bits (391), Expect = 7e-36
Identities = 82/117 (70%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVSTNI ES+V+KLFD GMEELV T + L GKDKVFLNGE
Sbjct: 297 LSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGE 356
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S P QVEIKRDE EVRIFSD GRILRPLLVV+N
Sbjct: 357 WVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDN 413
>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 1184
Score = 155 bits (391), Expect = 7e-36
Identities = 82/117 (70%), Positives = 87/117 (74%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVSTNI ES+V+KLFD GMEELV T + L GKDKVFLNGE
Sbjct: 524 LSTPDGENCGLVKNLATTGLVSTNIMESIVDKLFDSGMEELVNDTCSSLDGKDKVFLNGE 583
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S P QVEIKRDE EVRIFSD GRILRPLLVV+N
Sbjct: 584 WVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEHKGEVRIFSDGGRILRPLLVVDN 640
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 153 bits (387), Expect = 2e-35
Identities = 81/117 (69%), Positives = 89/117 (76%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLAITGLVST + + LV+KLFDCGME+LV T LSGK+KVFL+G+
Sbjct: 575 LSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGD 634
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC + LP QVEIKRDEQ EVRIFSDAGRILRPLLVVEN
Sbjct: 635 WVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVEN 691
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 153 bits (387), Expect = 2e-35
Identities = 81/117 (69%), Positives = 89/117 (76%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLAITGLVST + + LV+KLFDCGME+LV T LSGK+KVFL+G+
Sbjct: 539 LSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGD 598
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC + LP QVEIKRDEQ EVRIFSDAGRILRPLLVVEN
Sbjct: 599 WVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVEN 655
>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
arietinum]
Length = 1199
Score = 150 bits (380), Expect = 1e-34
Identities = 77/117 (65%), Positives = 88/117 (75%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKN+A+TGLVSTN++ES++ +LF CGMEELV T A+L KDKVFLNG+
Sbjct: 541 LSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEELVDDTTAVLGNKDKVFLNGD 600
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S LP QVEIKRD +EVRI SDAGRILRPLLVV N
Sbjct: 601 WVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRILSDAGRILRPLLVVSN 657
>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
vesca subsp. vesca]
Length = 1201
Score = 150 bits (378), Expect = 2e-34
Identities = 78/116 (67%), Positives = 86/116 (74%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA T LVS NISE ++ KLF CG+EELV TY L+GK KVFLNG+
Sbjct: 542 LSTPDGENCGLVKNLATTALVSINISEPILPKLFKCGIEELVDDTYTSLAGKHKVFLNGD 601
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVE 4
WVG+C +SH LP QVEIKRDE EVRIFSDAGRILRPLLVV+
Sbjct: 602 WVGICVDSHGFVTKLRRLRRSKKLPHQVEIKRDEHKGEVRIFSDAGRILRPLLVVQ 657
>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
gi|462422378|gb|EMJ26641.1| hypothetical protein
PRUPE_ppa000410mg [Prunus persica]
Length = 1200
Score = 149 bits (377), Expect = 3e-34
Identities = 79/117 (67%), Positives = 86/117 (73%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVSTN+ ESL+ +L CGME+LV T+ L GKDKVFLNG+
Sbjct: 543 LSTPDGENCGLVKNLATTGLVSTNVLESLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGD 602
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S LP QVEIKRD EVRIFSDAGRILRPLLVVEN
Sbjct: 603 WVGVCEDSLSFVLELRRMRRRKKLPHQVEIKRDVHQGEVRIFSDAGRILRPLLVVEN 659
>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
Length = 1196
Score = 147 bits (370), Expect = 2e-33
Identities = 78/117 (66%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVS NI+ESL+ L D GME L TY L K KVFLNG+
Sbjct: 535 LSTPDGENCGLVKNLAATGLVSINIAESLISTLCDSGMENLANDTYTPLHEKHKVFLNGD 594
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
W+GVC +S LP QVEIKRDEQH EVRIFSD+GRILRPLLVVEN
Sbjct: 595 WIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFSDSGRILRPLLVVEN 651
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 145 bits (367), Expect = 4e-33
Identities = 75/117 (64%), Positives = 88/117 (75%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA+TG+VST+++ES++ +L DCGMEELV T +L KDKVFLNG+
Sbjct: 579 LSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGKKDKVFLNGD 638
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S LP QVEIKRD+ +EVRI SDAGRILRPLLVV N
Sbjct: 639 WVGVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSN 695
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 143 bits (360), Expect = 3e-32
Identities = 76/117 (64%), Positives = 86/117 (73%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVS NI E L++KL GME++ +++ L KDKVFLNGE
Sbjct: 543 LSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGE 602
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVGVC +S LP QVEIKRDEQ +EVRIFSDAGRILRPLLVV+N
Sbjct: 603 WVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQN 659
>ref|XP_006406653.1| hypothetical protein EUTSA_v10019931mg [Eutrema salsugineum]
gi|557107799|gb|ESQ48106.1| hypothetical protein
EUTSA_v10019931mg [Eutrema salsugineum]
Length = 1169
Score = 142 bits (357), Expect = 6e-32
Identities = 73/117 (62%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKN+++ GLVST I E +VEKLF CGMEELV T L GK KV LNG+
Sbjct: 516 LSTPDGENCGLVKNMSLLGLVSTQILEPVVEKLFACGMEELVDDTSTPLCGKQKVLLNGD 575
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVG+C +S LP Q+EIKRD+ EVRIF+DAGR+LRPLLVVEN
Sbjct: 576 WVGLCSDSESFVAELKARRRQSELPRQMEIKRDQDDSEVRIFTDAGRLLRPLLVVEN 632
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 140 bits (353), Expect = 2e-31
Identities = 76/120 (63%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNIS---ESLVEKLFDCGMEELVVHTYALLSGKDKVFL 181
LSTPDGENCGLVKNLA+TGLVST++S E ++ KL DCGMEELV T L KDKV L
Sbjct: 540 LSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLL 599
Query: 180 NGEWVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
NG+WVGVC +S LP QVEIKRD+ EVRI+SDAGRILRPLLVV N
Sbjct: 600 NGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGN 659
>ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
gi|561010029|gb|ESW08936.1| hypothetical protein
PHAVU_009G087100g [Phaseolus vulgaris]
Length = 1202
Score = 139 bits (351), Expect = 3e-31
Identities = 75/120 (62%), Positives = 85/120 (70%), Gaps = 3/120 (2%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVST---NISESLVEKLFDCGMEELVVHTYALLSGKDKVFL 181
LSTPDGENCGLVKN+A+TGLVST N SES++ L +CGMEELV T + KDKVFL
Sbjct: 540 LSTPDGENCGLVKNMAVTGLVSTDVSNASESILPTLLNCGMEELVNDTTTHMGNKDKVFL 599
Query: 180 NGEWVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
NG+WVGVC +S LP QVEIKRD+ EVRI+SDAGRILRPLLVV N
Sbjct: 600 NGDWVGVCPDSSWFVAELRSERRKNKLPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGN 659
>ref|XP_006827132.1| hypothetical protein AMTR_s00010p00249150 [Amborella trichopoda]
gi|548831561|gb|ERM94369.1| hypothetical protein
AMTR_s00010p00249150 [Amborella trichopoda]
Length = 1221
Score = 139 bits (351), Expect = 3e-31
Identities = 73/117 (62%), Positives = 85/117 (72%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKNLA TGLVSTN+ E L++KL CGM++L + LSGKDKVFLNGE
Sbjct: 548 LSTPDGENCGLVKNLAATGLVSTNLREPLLDKLTRCGMDKLDRVSPPSLSGKDKVFLNGE 607
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVG+C +S + QVE+KRD+ EVRIFSDAGRILRPLL+VEN
Sbjct: 608 WVGLCEDSSRFVSELRNMRRNKLIHHQVEVKRDQPQHEVRIFSDAGRILRPLLIVEN 664
>ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase
D2A [Arabidopsis thaliana]
gi|75335101|sp|Q9LK40.1|NRPD2_ARATH RecName:
Full=DNA-directed RNA polymerases IV and V subunit 2;
AltName: Full=DNA-directed RNA polymerase D subunit 2a;
Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
AltName: Full=Nuclear RNA polymerase E 2; AltName:
Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION
2; AltName: Full=RNA polymerase IV subunit 2a; Short=POL
IV 2a gi|9293951|dbj|BAB01854.1| DNA-directed RNA
polymerase, subunit B [Arabidopsis thaliana]
gi|57791156|gb|AAW56422.1| polymerase IV second largest
subunit [Arabidopsis thaliana]
gi|62183738|gb|AAX73261.1| RNA polymerase IV
second-largest subunit [Arabidopsis thaliana]
gi|332643291|gb|AEE76812.1| nuclear RNA polymerase D2A
[Arabidopsis thaliana] gi|332643292|gb|AEE76813.1|
nuclear RNA polymerase D2A [Arabidopsis thaliana]
Length = 1172
Score = 138 bits (347), Expect = 9e-31
Identities = 71/117 (60%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKN+++ GLVST ES+VEKLF CGMEEL+ T L GK KV LNG+
Sbjct: 520 LSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGD 579
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVG+C +S LP ++EIKRD+ EVRIF+DAGR+LRPLLVVEN
Sbjct: 580 WVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVEN 636
>ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata
subsp. lyrata]
Length = 1169
Score = 137 bits (344), Expect = 2e-30
Identities = 69/117 (58%), Positives = 84/117 (71%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKN+++ GLVST + ES+VE L+ CGMEEL+ T L GK KV LNG+
Sbjct: 516 LSTPDGENCGLVKNMSLLGLVSTQVLESVVEMLYACGMEELMDDTSTPLCGKHKVLLNGD 575
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVG+C +S LP ++EIKRD+ EVRIF+DAGR+LRPLLVVEN
Sbjct: 576 WVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVEN 632
>sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
2b gi|9294064|dbj|BAB02021.1| DNA-dependent RNA
polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 135 bits (340), Expect = 6e-30
Identities = 70/117 (59%), Positives = 83/117 (70%)
Frame = -2
Query: 351 LSTPDGENCGLVKNLAITGLVSTNISESLVEKLFDCGMEELVVHTYALLSGKDKVFLNGE 172
LSTPDGENCGLVKN+++ GLVST ES+VE LF CGMEEL+ T L GK KV LNG+
Sbjct: 466 LSTPDGENCGLVKNMSLLGLVSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGD 525
Query: 171 WVGVCGNSHXXXXXXXXXXXXXXLPPQVEIKRDEQHKEVRIFSDAGRILRPLLVVEN 1
WVG+C +S LP ++EIKRD+ EVRIF+DAGR+LRPLLVVEN
Sbjct: 526 WVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVEN 582