BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00015715
         (524 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   236   3e-60
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   236   3e-60
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   236   3e-60
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              235   4e-60
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   235   4e-60
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   235   5e-60
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   233   3e-59
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...   233   3e-59
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   231   6e-59
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   226   3e-57
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   224   1e-56
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   224   1e-56
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   223   2e-56
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob...   223   2e-56
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   223   2e-56
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   222   5e-56
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   217   2e-54
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...   216   3e-54
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   214   1e-53
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...   204   8e-51

>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1217

 Score =  236 bits (601), Expect = 3e-60
 Identities = 116/174 (66%), Positives = 138/174 (79%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324 LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 383

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI+ YLF +L+  KQKA FLGYMVKCLL +F G+RK D+RDDFRNK       
Sbjct: 384 PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 443

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 R HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG
Sbjct: 444 LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTG 497


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
           lycopersicum]
          Length = 1217

 Score =  236 bits (601), Expect = 3e-60
 Identities = 116/174 (66%), Positives = 138/174 (79%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324 LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 383

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI+ YLF +L+  KQKA FLGYMVKCLL +F G+RK D+RDDFRNK       
Sbjct: 384 PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 443

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 R HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG
Sbjct: 444 LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTG 497


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  236 bits (601), Expect = 3e-60
 Identities = 116/174 (66%), Positives = 138/174 (79%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 318 LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 377

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI+ YLF +L+  KQKA FLGYMVKCLL +F G+RK D+RDDFRNK       
Sbjct: 378 PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 437

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 R HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG
Sbjct: 438 LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTG 491


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  235 bits (600), Expect = 4e-60
 Identities = 120/178 (67%), Positives = 139/178 (78%), Gaps = 4/178 (2%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCAD----FRRRGKALSRVHDLMKK 355
           LG SSDKEVVDLID+  DDA I NIL ASI++AD+        FRR+G A+S V  L+K 
Sbjct: 337 LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS 396

Query: 354 CRFPPEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXX 175
           C+FPP E I++CISKYLF + + +KQKA FLGYMVKCLLQA+TG+RKCD+RDDFRNK   
Sbjct: 397 CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE 456

Query: 174 XXXXXXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                     RVHI+HAERRMVKAMQR+LYGDR LRPIE+YLDASIITNGLSRAFSTG
Sbjct: 457 LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTG 514


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  235 bits (600), Expect = 4e-60
 Identities = 120/178 (67%), Positives = 139/178 (78%), Gaps = 4/178 (2%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCAD----FRRRGKALSRVHDLMKK 355
           LG SSDKEVVDLID+  DDA I NIL ASI++AD+        FRR+G A+S V  L+K 
Sbjct: 301 LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS 360

Query: 354 CRFPPEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXX 175
           C+FPP E I++CISKYLF + + +KQKA FLGYMVKCLLQA+TG+RKCD+RDDFRNK   
Sbjct: 361 CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE 420

Query: 174 XXXXXXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                     RVHI+HAERRMVKAMQR+LYGDR LRPIE+YLDASIITNGLSRAFSTG
Sbjct: 421 LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTG 478


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  235 bits (599), Expect = 5e-60
 Identities = 117/174 (67%), Positives = 138/174 (79%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+EVVDLID    D +IINIL ASI+DADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324 LGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKFP 383

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI +YLF +L+ LKQKA FLGYMVKCLL ++ G+RK D+RDDFRNK       
Sbjct: 384 PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 443

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 RVH+KHAERRMVKA+QRDL GDR ++PIEHYLDASIITNGLSRAFSTG
Sbjct: 444 LLERELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTG 497


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1219

 Score =  233 bits (593), Expect = 3e-59
 Identities = 115/174 (66%), Positives = 137/174 (78%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+E+VDLID    D +IINIL ASI+DADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 322 LGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLIKSCKFP 381

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI +YLF +L+ LKQKA FLGYMVKCLL ++ G+RK D+RDDFRNK       
Sbjct: 382 PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 441

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 R HIKHAERRMVKA+QRDL GDR ++P+EHYLDASIITNGLSRAFSTG
Sbjct: 442 LLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDASIITNGLSRAFSTG 495


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
           lycopersicum]
          Length = 1219

 Score =  233 bits (593), Expect = 3e-59
 Identities = 117/174 (67%), Positives = 136/174 (78%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSD+EVVDLID    D  IINIL ASI+DADKNC DFR+  +AL+ V  L+K C+FP
Sbjct: 322 LGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFRKGKRALAYVDRLIKSCKFP 381

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E +E+CI +YLF +L+ LKQKA FLGYMVKCLL ++ G+RK D+RDDFRNK       
Sbjct: 382 PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 441

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 RVHIKHAERRMVKA+QRDL GDR + PIEHYLDASIITNGLSRAFSTG
Sbjct: 442 LLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDASIITNGLSRAFSTG 495


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1181

 Score =  231 bits (590), Expect = 6e-59
 Identities = 113/174 (64%), Positives = 132/174 (75%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGV SDKEV+DLIDY ++DASI+NI FASI+DAD+ C  FRR  +AL  V  L+KK RFP
Sbjct: 298 LGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFP 357

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E IED IS YLF  L S + KA FLGYMVKCLL+A+TG RKCD+RD FRNK       
Sbjct: 358 PKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASE 417

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 +VH+ HA RRM KA+QRDLYGDR + PIEHYLDASI+TNGL+RAFSTG
Sbjct: 418 LLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTG 471


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
           gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
           RNA polymerases IV and V subunit 2-like [Citrus
           sinensis] gi|557545145|gb|ESR56123.1| hypothetical
           protein CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  226 bits (575), Expect = 3e-57
 Identities = 111/174 (63%), Positives = 134/174 (77%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKE+V+LID+T +D SI+NILFASI+DAD  C +FR+   AL  V  L+K   FP
Sbjct: 300 LGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFP 359

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P E  E+C++ YLF SL   KQKA FLGYMVKCLLQA++G+RKCD+RDDFRNK       
Sbjct: 360 PGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 419

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 +VHI HA +RM KA+QRDLYGDR++RPIE+YLDASI+TNGLSRAFSTG
Sbjct: 420 LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 473


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  224 bits (570), Expect = 1e-56
 Identities = 113/176 (64%), Positives = 133/176 (75%), Gaps = 2/176 (1%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASI--YDADKNCADFRRRGKALSRVHDLMKKCR 349
           LGVSSDKE+VDLIDY  DD +++NILFAS+   D D    DFRR  +AL+ + + ++K  
Sbjct: 304 LGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTS 363

Query: 348 FPPEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXX 169
           FPP + IEDC++ YLFASL   KQK HFLGYMVKCLLQA+TG+RKCD+RDDFRNK     
Sbjct: 364 FPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELA 423

Query: 168 XXXXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                   +VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTG
Sbjct: 424 AELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTG 479


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  224 bits (570), Expect = 1e-56
 Identities = 113/176 (64%), Positives = 133/176 (75%), Gaps = 2/176 (1%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASI--YDADKNCADFRRRGKALSRVHDLMKKCR 349
           LGVSSDKE+VDLIDY  DD +++NILFAS+   D D    DFRR  +AL+ + + ++K  
Sbjct: 304 LGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTS 363

Query: 348 FPPEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXX 169
           FPP + IEDC++ YLFASL   KQK HFLGYMVKCLLQA+TG+RKCD+RDDFRNK     
Sbjct: 364 FPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELA 423

Query: 168 XXXXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                   +VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTG
Sbjct: 424 AELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTG 479


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
           gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
           isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  223 bits (569), Expect = 2e-56
 Identities = 113/174 (64%), Positives = 132/174 (75%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V  L+K  RFP
Sbjct: 290 LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 349

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           PEE IE+C+S YLF +L S KQKA FLGYMVKCLLQA+TG+ KCD+RDDFRNK       
Sbjct: 350 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 409

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 +VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTG
Sbjct: 410 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTG 463


>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
           gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
           isoform 2 [Theobroma cacao]
          Length = 961

 Score =  223 bits (569), Expect = 2e-56
 Identities = 113/174 (64%), Positives = 132/174 (75%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V  L+K  RFP
Sbjct: 63  LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 122

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           PEE IE+C+S YLF +L S KQKA FLGYMVKCLLQA+TG+ KCD+RDDFRNK       
Sbjct: 123 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 182

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 +VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTG
Sbjct: 183 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTG 236


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
           gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
           isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  223 bits (569), Expect = 2e-56
 Identities = 113/174 (64%), Positives = 132/174 (75%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V  L+K  RFP
Sbjct: 290 LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 349

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           PEE IE+C+S YLF +L S KQKA FLGYMVKCLLQA+TG+ KCD+RDDFRNK       
Sbjct: 350 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 409

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 +VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTG
Sbjct: 410 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTG 463


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  222 bits (565), Expect = 5e-56
 Identities = 110/174 (63%), Positives = 133/174 (76%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LG SSDKEVV+LID   +D+ I+N+L ASIYDAD+NC  FRR   A++ +   ++ C+FP
Sbjct: 125 LGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENCKFP 184

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P+E IE  +S YLF +L+  +QKA FLGYMVKCLLQA+TG+RK D+RDDFRNK       
Sbjct: 185 PQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELAGE 244

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 RVH+KHAERRMVKAMQRDLYG+R +  IEHYLDASIITNGLSRAFSTG
Sbjct: 245 LLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTG 298


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
           vesca subsp. vesca]
          Length = 1201

 Score =  217 bits (552), Expect = 2e-54
 Identities = 109/174 (62%), Positives = 126/174 (72%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKEV+DLIDY  +DASI NILFASI DAD+   DFRR   AL  V + +K   FP
Sbjct: 308 LGVSSDKEVIDLIDYGIEDASISNILFASIRDADERKDDFRRGNNALRYVENAIKSTTFP 367

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P E +EDCIS YLF ++  LKQKA FLGYMVKCLLQ   G RKCD+RDDFRNK       
Sbjct: 368 PGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGE 427

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 + H+ HA R+M KA+QRDL GD  +RP+EHYLDASI+TNG+SRAFSTG
Sbjct: 428 LLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHYLDASIVTNGVSRAFSTG 481


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
           gi|462422378|gb|EMJ26641.1| hypothetical protein
           PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  216 bits (549), Expect = 3e-54
 Identities = 112/178 (62%), Positives = 133/178 (74%), Gaps = 4/178 (2%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNC----ADFRRRGKALSRVHDLMKK 355
           LGVSSD+EV++LIDY ++DASI NILFASI DADK        FRR   AL  V ++++K
Sbjct: 305 LGVSSDREVMNLIDYDSEDASISNILFASIRDADKLNDKVDGGFRRGKNALKYVDEVIRK 364

Query: 354 CRFPPEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXX 175
             FPP E +E+CIS YLF +L  LKQKA FLGYMVK LLQA+ G+RKCD+RDDFRNK   
Sbjct: 365 TAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLD 424

Query: 174 XXXXXXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                     + HI HA RRM KA+QRDLYGDR++RPIEHYLDASI+TNG+SRAFSTG
Sbjct: 425 LAGELLERELKAHIGHARRRMAKALQRDLYGDRAVRPIEHYLDASIVTNGISRAFSTG 482


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  214 bits (545), Expect = 1e-53
 Identities = 108/174 (62%), Positives = 129/174 (74%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LGVSSDKEVVDLID+ TDDASI+NILF SI  +D+ CA FRR+ KAL  V   +KK +FP
Sbjct: 301 LGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCAGFRRQKKALGFVEKHIKKTQFP 360

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P E  E+C+  +LF +L  + QKA FLGYMVKCLLQAFTG+RKC+++DDFRNK       
Sbjct: 361 PRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAFTGRRKCNNKDDFRNKRLDLAGE 420

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 R  + HA +R  KA+QRDLYGD+ LR IE YLDASI+TNGLSRAFSTG
Sbjct: 421 LLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYLDASIVTNGLSRAFSTG 474


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score =  204 bits (520), Expect = 8e-51
 Identities = 104/174 (59%), Positives = 124/174 (71%)
 Frame = -3

Query: 522 LGVSSDKEVVDLIDYTTDDASIINILFASIYDADKNCADFRRRGKALSRVHDLMKKCRFP 343
           LG+ +DKEVV LID   +D+ I NIL ASIYDADK    FR+ G +   + +LM+ C+FP
Sbjct: 313 LGIPNDKEVVKLIDLDIEDSDIANILIASIYDADKKYEGFRKEGNSSKHIKELMQNCKFP 372

Query: 342 PEEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAFTGQRKCDSRDDFRNKXXXXXXX 163
           P E IED I  YLF  L +  QKA FLGYMVKCLL+A+ G+RK ++RDDFRNK       
Sbjct: 373 PTESIEDLIKNYLFPHLKTPIQKACFLGYMVKCLLEAYKGRRKVENRDDFRNKRLELAGE 432

Query: 162 XXXXXXRVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTG 1
                 RVHIKHAERRM KAMQRDLY DR ++ I+ YLDASI+TNGLSRAFSTG
Sbjct: 433 LLERELRVHIKHAERRMTKAMQRDLYRDREVQSIDQYLDASIVTNGLSRAFSTG 486