BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00015714
         (705 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21137.3| unnamed protein product [Vitis vinifera]              363   3e-98
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   363   3e-98
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   351   2e-94
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   348   8e-94
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   348   1e-93
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   348   1e-93
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   348   1e-93
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...   346   5e-93
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   345   6e-93
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   341   2e-91
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   338   1e-90
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   337   2e-90
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob...   337   2e-90
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   337   2e-90
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...   335   7e-90
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   334   2e-89
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   334   2e-89
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   332   1e-88
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   327   2e-87
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus...   322   1e-85

>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  363 bits (932), Expect = 3e-98
 Identities = 177/238 (74%), Positives = 199/238 (83%), Gaps = 4/238 (1%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCAD----FRRRGKALSRVHELMKK 170
            LG SSDKEVVDLID++ DDA I NIL ASI++AD+        FRR+G A+S V +L+K 
Sbjct: 337  LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS 396

Query: 171  CRFPPGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXX 350
            C+FPPGE I++CISKYLF + + +KQKA FLGYMVKCLLQAYTG+RKCDNRDDFRNK   
Sbjct: 397  CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE 456

Query: 351  XXXXXXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAW 530
                       VHI+HAERRMVKAMQR+LYGDR LRPIE+YLDASIITNGLSRAFSTG W
Sbjct: 457  LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQW 516

Query: 531  SHPFKKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            SHPFK+MERISGVVATLRRTNPLQ TADMRKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 517  SHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 574


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  363 bits (932), Expect = 3e-98
 Identities = 177/238 (74%), Positives = 199/238 (83%), Gaps = 4/238 (1%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCAD----FRRRGKALSRVHELMKK 170
            LG SSDKEVVDLID++ DDA I NIL ASI++AD+        FRR+G A+S V +L+K 
Sbjct: 301  LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS 360

Query: 171  CRFPPGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXX 350
            C+FPPGE I++CISKYLF + + +KQKA FLGYMVKCLLQAYTG+RKCDNRDDFRNK   
Sbjct: 361  CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE 420

Query: 351  XXXXXXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAW 530
                       VHI+HAERRMVKAMQR+LYGDR LRPIE+YLDASIITNGLSRAFSTG W
Sbjct: 421  LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQW 480

Query: 531  SHPFKKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            SHPFK+MERISGVVATLRRTNPLQ TADMRKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 481  SHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 538


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  351 bits (900), Expect = 2e-94
 Identities = 168/234 (71%), Positives = 192/234 (82%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+EVVDLID    D +IINIL ASI+DADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324  LGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLVKSCKFP 383

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI +YLF +L+ LKQKA FLGYMVKCLL +Y G+RK DNRDDFRNK       
Sbjct: 384  PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 443

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                   VH+KHAERRMVKA+QRDL GDR ++PIEHYLDASIITNGLSRAFSTG W HP+
Sbjct: 444  LLERELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPY 503

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TAD+RKTRQ+V YTGKVGDARYPHPSHWGK+CF
Sbjct: 504  KRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCF 557


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score =  348 bits (894), Expect = 8e-94
 Identities = 166/234 (70%), Positives = 191/234 (81%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+E+VDLID    D +IINIL ASI+DADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 322  LGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFRKGKKALAYVDRLIKSCKFP 381

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI +YLF +L+ LKQKA FLGYMVKCLL +Y G+RK DNRDDFRNK       
Sbjct: 382  PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 441

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                    HIKHAERRMVKA+QRDL GDR ++P+EHYLDASIITNGLSRAFSTG W HP+
Sbjct: 442  LLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDASIITNGLSRAFSTGHWCHPY 501

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TAD+RKTRQ+V YTGKVGDARYPHPSHWGK+CF
Sbjct: 502  KRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPHPSHWGKVCF 555


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score =  348 bits (893), Expect = 1e-93
 Identities = 165/234 (70%), Positives = 192/234 (82%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324  LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 383

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI+ YLF +L+  KQKA FLGYMVKCLL ++ G+RK DNRDDFRNK       
Sbjct: 384  PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 443

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                    HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG W HP+
Sbjct: 444  LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPY 503

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TADMRK+RQ+V YTGKVGDARYPHPSHWGK+CF
Sbjct: 504  KRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCF 557


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score =  348 bits (893), Expect = 1e-93
 Identities = 165/234 (70%), Positives = 192/234 (82%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 324  LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 383

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI+ YLF +L+  KQKA FLGYMVKCLL ++ G+RK DNRDDFRNK       
Sbjct: 384  PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 443

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                    HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG W HP+
Sbjct: 444  LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPY 503

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TADMRK+RQ+V YTGKVGDARYPHPSHWGK+CF
Sbjct: 504  KRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCF 557


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  348 bits (893), Expect = 1e-93
 Identities = 165/234 (70%), Positives = 192/234 (82%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+EVV+LID   +D +I+NIL ASI++ADKNC DFR+  KAL+ V  L+K C+FP
Sbjct: 318  LGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFRKGKKALAYVDRLIKNCKFP 377

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI+ YLF +L+  KQKA FLGYMVKCLL ++ G+RK DNRDDFRNK       
Sbjct: 378  PQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGRRKVDNRDDFRNKRLELAGE 437

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                    HIKHAERRMVKAMQRDLYGDR ++PIEHYLDASIITNGLSRAFSTG W HP+
Sbjct: 438  LLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPY 497

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TADMRK+RQ+V YTGKVGDARYPHPSHWGK+CF
Sbjct: 498  KRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDARYPHPSHWGKLCF 551


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score =  346 bits (887), Expect = 5e-93
 Identities = 167/234 (71%), Positives = 190/234 (81%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSD+EVVDLID    D  IINIL ASI+DADKNC DFR+  +AL+ V  L+K C+FP
Sbjct: 322  LGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFRKGKRALAYVDRLIKSCKFP 381

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E +E+CI +YLF +L+ LKQKA FLGYMVKCLL +Y G+RK DNRDDFRNK       
Sbjct: 382  PQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGE 441

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                   VHIKHAERRMVKA+QRDL GDR + PIEHYLDASIITNGLSRAFSTG W HP+
Sbjct: 442  LLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDASIITNGLSRAFSTGHWCHPY 501

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER+SGVVATLRRTNPLQ TAD+RKTRQ+V YTGKVGDARYP+PSHWGK+CF
Sbjct: 502  KRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDARYPNPSHWGKVCF 555


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  345 bits (886), Expect = 6e-93
 Identities = 167/234 (71%), Positives = 190/234 (81%)
 Frame = +3

Query: 3   LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
           LG SSDKEVV+LID   +D+ I+N+L ASIYDAD+NC  FRR   A++ + + ++ C+FP
Sbjct: 125 LGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENCKFP 184

Query: 183 PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
           P E IE  +S YLF +L+  +QKA FLGYMVKCLLQAYTG+RK DNRDDFRNK       
Sbjct: 185 PQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLELAGE 244

Query: 363 XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                  VH+KHAERRMVKAMQRDLYG+R +  IEHYLDASIITNGLSRAFSTGAWSHP+
Sbjct: 245 LLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPY 304

Query: 543 KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
           KKMERISGVVATLRRTNPLQT ADMRKTRQ+V YTGKVGDARYPHPSHWGKICF
Sbjct: 305 KKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICF 358


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  341 bits (874), Expect = 2e-91
 Identities = 162/234 (69%), Positives = 189/234 (80%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSDKE+V+LID++ +D SI+NILFASI+DAD  C +FR+   AL  V +L+K   FP
Sbjct: 300  LGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFP 359

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            PGE  E+C++ YLF SL   KQKA FLGYMVKCLLQAY+G+RKCDNRDDFRNK       
Sbjct: 360  PGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 419

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                   VHI HA +RM KA+QRDLYGDR++RPIE+YLDASI+TNGLSRAFSTGAWSHPF
Sbjct: 420  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 479

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+ ERISG+VA L R NPLQT  D+R+TRQ+VQYTGKVGDARYPHPSHWGKICF
Sbjct: 480  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 533


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1181

 Score =  338 bits (866), Expect = 1e-90
 Identities = 161/234 (68%), Positives = 183/234 (78%)
 Frame = +3

Query: 3   LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
           LGV SDKEV+DLIDY+++DASI+NI FASI+DAD+ C  FRR  +AL  V +L+KK RFP
Sbjct: 298 LGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFP 357

Query: 183 PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
           P E IED IS YLF  L S + KA FLGYMVKCLL+AYTG RKCDNRD FRNK       
Sbjct: 358 PKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASE 417

Query: 363 XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                  VH+ HA RRM KA+QRDLYGDR + PIEHYLDASI+TNGL+RAFSTGAW HPF
Sbjct: 418 LLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPF 477

Query: 543 KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
           K MER+SGVV  L R NPLQT  D+RKTRQ+V YTGKVGDARYPHPSHWG++CF
Sbjct: 478 KWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCF 531


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
           gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
           isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  337 bits (864), Expect = 2e-90
 Identities = 164/234 (70%), Positives = 186/234 (79%)
 Frame = +3

Query: 3   LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V +L+K  RFP
Sbjct: 290 LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 349

Query: 183 PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
           P E IE+C+S YLF +L S KQKA FLGYMVKCLLQAYTG+ KCDNRDDFRNK       
Sbjct: 350 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 409

Query: 363 XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                  VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTGAWSHP+
Sbjct: 410 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPY 469

Query: 543 KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
           K+MERISGVVA L R NPLQT  D+RKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 470 KRMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCF 523


>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
           gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
           isoform 2 [Theobroma cacao]
          Length = 961

 Score =  337 bits (864), Expect = 2e-90
 Identities = 164/234 (70%), Positives = 186/234 (79%)
 Frame = +3

Query: 3   LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V +L+K  RFP
Sbjct: 63  LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 122

Query: 183 PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
           P E IE+C+S YLF +L S KQKA FLGYMVKCLLQAYTG+ KCDNRDDFRNK       
Sbjct: 123 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 182

Query: 363 XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                  VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTGAWSHP+
Sbjct: 183 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPY 242

Query: 543 KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
           K+MERISGVVA L R NPLQT  D+RKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 243 KRMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCF 296


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
           gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
           isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  337 bits (864), Expect = 2e-90
 Identities = 164/234 (70%), Positives = 186/234 (79%)
 Frame = +3

Query: 3   LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
           LGVSSDKEVV+LIDY ++D+SI NILFASI +AD  C  F +   A+  V +L+K  RFP
Sbjct: 290 LGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKFCQGRNAIDYVGKLVKDTRFP 349

Query: 183 PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
           P E IE+C+S YLF +L S KQKA FLGYMVKCLLQAYTG+ KCDNRDDFRNK       
Sbjct: 350 PEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTGRLKCDNRDDFRNKRLELAGE 409

Query: 363 XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                  VHI HA RRM K +QRDLY DR++RPIEHYLDASI+TNGLSRAFSTGAWSHP+
Sbjct: 410 LLERELKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPY 469

Query: 543 KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
           K+MERISGVVA L R NPLQT  D+RKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 470 KRMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCF 523


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
            gi|462422378|gb|EMJ26641.1| hypothetical protein
            PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  335 bits (860), Expect = 7e-90
 Identities = 166/238 (69%), Positives = 188/238 (78%), Gaps = 4/238 (1%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNC----ADFRRRGKALSRVHELMKK 170
            LGVSSD+EV++LIDY ++DASI NILFASI DADK        FRR   AL  V E+++K
Sbjct: 305  LGVSSDREVMNLIDYDSEDASISNILFASIRDADKLNDKVDGGFRRGKNALKYVDEVIRK 364

Query: 171  CRFPPGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXX 350
              FPPGE +E+CIS YLF +L  LKQKA FLGYMVK LLQAY G+RKCDNRDDFRNK   
Sbjct: 365  TAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLD 424

Query: 351  XXXXXXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAW 530
                        HI HA RRM KA+QRDLYGDR++RPIEHYLDASI+TNG+SRAFSTGAW
Sbjct: 425  LAGELLERELKAHIGHARRRMAKALQRDLYGDRAVRPIEHYLDASIVTNGISRAFSTGAW 484

Query: 531  SHPFKKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
             HPFK+MER+SGVVAT+ R NPLQT  DMRKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 485  CHPFKRMERMSGVVATVGRANPLQTMVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 542


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score =  334 bits (856), Expect = 2e-89
 Identities = 162/236 (68%), Positives = 186/236 (78%), Gaps = 2/236 (0%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASI--YDADKNCADFRRRGKALSRVHELMKKCR 176
            LGVSSDKE+VDLIDY  DD +++NILFAS+   D D    DFRR  +AL+ +   ++K  
Sbjct: 304  LGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTS 363

Query: 177  FPPGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXX 356
            FPP + IEDC++ YLFASL   KQK HFLGYMVKCLLQAYTG+RKCDNRDDFRNK     
Sbjct: 364  FPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELA 423

Query: 357  XXXXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSH 536
                     VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTGAW+H
Sbjct: 424  AELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAWAH 483

Query: 537  PFKKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
             FK+MERISGVVATL R NPLQT A++R+TRQ+V YTGKVGDARYPHPSHWG++CF
Sbjct: 484  AFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 539


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score =  334 bits (856), Expect = 2e-89
 Identities = 162/236 (68%), Positives = 186/236 (78%), Gaps = 2/236 (0%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASI--YDADKNCADFRRRGKALSRVHELMKKCR 176
            LGVSSDKE+VDLIDY  DD +++NILFAS+   D D    DFRR  +AL+ +   ++K  
Sbjct: 304  LGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKRALTFLDNEIRKTS 363

Query: 177  FPPGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXX 356
            FPP + IEDC++ YLFASL   KQK HFLGYMVKCLLQAYTG+RKCDNRDDFRNK     
Sbjct: 364  FPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELA 423

Query: 357  XXXXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSH 536
                     VHI HA RRM KA+QRDLYGDR + PIEHYLDASIITNGLSRAFSTGAW+H
Sbjct: 424  AELLERELKVHIAHARRRMEKALQRDLYGDRQVHPIEHYLDASIITNGLSRAFSTGAWAH 483

Query: 537  PFKKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
             FK+MERISGVVATL R NPLQT A++R+TRQ+V YTGKVGDARYPHPSHWG++CF
Sbjct: 484  AFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCF 539


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score =  332 bits (850), Expect = 1e-88
 Identities = 160/234 (68%), Positives = 178/234 (76%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSDKEV+DLIDY  +DASI NILFASI DAD+   DFRR   AL  V   +K   FP
Sbjct: 308  LGVSSDKEVIDLIDYGIEDASISNILFASIRDADERKDDFRRGNNALRYVENAIKSTTFP 367

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            PGE +EDCIS YLF ++  LKQKA FLGYMVKCLLQ   G RKCDNRDDFRNK       
Sbjct: 368  PGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGE 427

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                    H+ HA R+M KA+QRDL GD  +RP+EHYLDASI+TNG+SRAFSTGAW HPF
Sbjct: 428  LLERELKAHVSHARRKMAKALQRDLGGDHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPF 487

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MERISGVVA + R NPLQT  DMRKTRQ+VQYTGK GDARYPHPSHWGK+CF
Sbjct: 488  KRMERISGVVANIGRANPLQTMIDMRKTRQQVQYTGKAGDARYPHPSHWGKVCF 541


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  327 bits (838), Expect = 2e-87
 Identities = 158/234 (67%), Positives = 183/234 (78%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LGVSSDKEVVDLID+ TDDASI+NILF SI  +D+ CA FRR+ KAL  V + +KK +FP
Sbjct: 301  LGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCAGFRRQKKALGFVEKHIKKTQFP 360

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E  E+C+  +LF +L  + QKA FLGYMVKCLLQA+TG+RKC+N+DDFRNK       
Sbjct: 361  PRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAFTGRRKCNNKDDFRNKRLDLAGE 420

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                     + HA +R  KA+QRDLYGD+ LR IE YLDASI+TNGLSRAFSTGAW HPF
Sbjct: 421  LLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYLDASIVTNGLSRAFSTGAWCHPF 480

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            KK ERISGVVA + RTNPLQT  DMRKTRQ+VQYTGKVGDARYPHPSHWGK+CF
Sbjct: 481  KKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 534


>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
          Length = 1211

 Score =  322 bits (824), Expect = 1e-85
 Identities = 156/234 (66%), Positives = 178/234 (76%)
 Frame = +3

Query: 3    LGVSSDKEVVDLIDYSTDDASIINILFASIYDADKNCADFRRRGKALSRVHELMKKCRFP 182
            LG+ +DKEVV LID   +D+ I NIL ASIYDADK    FR+ G +   + ELM+ C+FP
Sbjct: 313  LGIPNDKEVVKLIDLDIEDSDIANILIASIYDADKKYEGFRKEGNSSKHIKELMQNCKFP 372

Query: 183  PGEPIEDCISKYLFASLTSLKQKAHFLGYMVKCLLQAYTGQRKCDNRDDFRNKXXXXXXX 362
            P E IED I  YLF  L +  QKA FLGYMVKCLL+AY G+RK +NRDDFRNK       
Sbjct: 373  PTESIEDLIKNYLFPHLKTPIQKACFLGYMVKCLLEAYKGRRKVENRDDFRNKRLELAGE 432

Query: 363  XXXXXXXVHIKHAERRMVKAMQRDLYGDRSLRPIEHYLDASIITNGLSRAFSTGAWSHPF 542
                   VHIKHAERRM KAMQRDLY DR ++ I+ YLDASI+TNGLSRAFSTGAW HPF
Sbjct: 433  LLERELRVHIKHAERRMTKAMQRDLYRDREVQSIDQYLDASIVTNGLSRAFSTGAWCHPF 492

Query: 543  KKMERISGVVATLRRTNPLQTTADMRKTRQKVQYTGKVGDARYPHPSHWGKICF 704
            K+MER SGVVAT+RRTNPLQ  ADMRKTRQ+V YTG+VGDARYPHPSHWGK+CF
Sbjct: 493  KRMERTSGVVATIRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKVCF 546