BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00015674
         (542 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prun...   180   2e-43
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   178   9e-43
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   177   2e-42
ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [A...   175   6e-42
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I...   175   7e-42
ref|XP_004976019.1| PREDICTED: DNA-directed RNA polymerases I, I...   174   1e-41
ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, I...   172   4e-41
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   172   5e-41
ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II a...   171   8e-41
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a...   171   8e-41
ref|XP_007218418.1| hypothetical protein PRUPE_ppa011542mg [Prun...   171   8e-41
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun...   171   1e-40
ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, I...   170   2e-40
ref|XP_007014514.1| DNA-directed RNA polymerase II, putative iso...   169   5e-40
ref|XP_004967757.1| PREDICTED: DNA-directed RNA polymerases I, I...   168   7e-40
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   168   7e-40
ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit famil...   168   9e-40
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...   167   2e-39
gb|AFK38034.1| unknown [Lotus japonicus]                              167   2e-39
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   167   2e-39

>ref|XP_007219752.1| hypothetical protein PRUPE_ppa024345mg [Prunus persica]
           gi|462416214|gb|EMJ20951.1| hypothetical protein
           PRUPE_ppa024345mg [Prunus persica]
          Length = 206

 Score =  180 bits (456), Expect = 2e-43
 Identities = 85/159 (53%), Positives = 122/159 (76%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ +R+RRT+ +MLRDR Y V D EINM  EQF AK+GE +KR+D  I+K K  D  D
Sbjct: 7   EITRLYRVRRTVMQMLRDRKYLVGDFEINMTREQFKAKYGENMKREDLTINKTKRNDSTD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           Q+YVFFPEEPKVGVK++K+Y+ RM +D V  AI+V ++ ++P A+  I +++  F+M+VF
Sbjct: 67  QLYVFFPEEPKVGVKTIKTYTNRMKSDNVARAILVTQQNMTPMARTCISEISSKFHMEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +E +L+VNVT+HVLVP+H+LLT ++K  LL+R+ V ET+
Sbjct: 127 QEPELMVNVTEHVLVPEHQLLTNEEKKTLLERYTVKETQ 165


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  178 bits (451), Expect = 9e-43
 Identities = 86/159 (54%), Positives = 123/159 (77%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E  + FRIRRT+ +MLRDRGY V D EINM  EQF+AK GE +KR+D VI+K    D  D
Sbjct: 7   EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFP+E KVGVK++K+Y+ RM ++ V+ AI+VV++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA+LLVN+ +HVLVP+H++LT ++K  LLKR+ V ET+
Sbjct: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQ 165


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  177 bits (448), Expect = 2e-42
 Identities = 86/165 (52%), Positives = 126/165 (76%)
 Frame = +3

Query: 48  MSEFNGENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCK 227
           MS    E ++ FRIR+T+ +ML+DRGY V D EINM   QFV+K GE +KR+D VI+K K
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 228 EKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKC 407
             D  DQIYVFFPEE KVGVK++K+Y+ RM ++ V+ AI+VV++ L+P A+  I +++  
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 408 FNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           F+++VF+EA+LLVN+ +HVLVP+H++LT ++K  LL+R+ V ET+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQ 165


>ref|XP_006858910.1| hypothetical protein AMTR_s00068p00034280 [Amborella trichopoda]
           gi|548863022|gb|ERN20377.1| hypothetical protein
           AMTR_s00068p00034280 [Amborella trichopoda]
          Length = 206

 Score =  175 bits (444), Expect = 6e-42
 Identities = 81/165 (49%), Positives = 126/165 (76%)
 Frame = +3

Query: 48  MSEFNGENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCK 227
           MS  + + +K FRIRRTL +MLRDRGY V D EINM   QF+ K G+ +K+DD VI+K  
Sbjct: 1   MSGMDDQTSKLFRIRRTLMQMLRDRGYLVGDFEINMTKAQFIEKFGDEVKKDDLVINKTM 60

Query: 228 EKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKC 407
             +P +QIYVFFPEE KVGVK+VK+Y+ RM ++ V+ AI+V+++ L+P A+  + +++  
Sbjct: 61  RNNPSEQIYVFFPEEQKVGVKTVKTYTERMKSENVFRAILVLQQNLTPFARQCVQEISAK 120

Query: 408 FNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           F++++F+E++LLVN+ +HVLVP+H++LT ++K  LL+R+ + ET+
Sbjct: 121 FHLEIFQESELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQ 165


>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like isoform 1 [Solanum lycopersicum]
           gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           isoform 2 [Solanum lycopersicum]
          Length = 206

 Score =  175 bits (443), Expect = 7e-42
 Identities = 82/159 (51%), Positives = 121/159 (76%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E +K FR+R+TL EML DRGY V D EINM   QF+ K+GE +KR+D VI K K  +  D
Sbjct: 7   ELSKLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVIQKAKRNNSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEEPKVGVK++K+Y+ RM  + V+ AI++V++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA++LVN+  HVL+P+H+LL+ ++K  LL+R+ V ET+
Sbjct: 127 QEAEMLVNIKNHVLIPEHQLLSPEEKKTLLERYTVKETQ 165


>ref|XP_004976019.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Setaria italica]
          Length = 206

 Score =  174 bits (441), Expect = 1e-41
 Identities = 79/165 (47%), Positives = 126/165 (76%)
 Frame = +3

Query: 48  MSEFNGENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCK 227
           M+   GE  + +RIRRT+ +MLRDRGY + + +I +K E F+ ++G+ ++RDD VI++CK
Sbjct: 1   MASSEGETNRLWRIRRTVMQMLRDRGYLITEADIGLKREAFIDRYGDPVRRDDLVINRCK 60

Query: 228 EKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKC 407
           + DP DQIYVFFP EPK GVK++++Y  +M  + V+ AI+VV++ LS  A+ ++ +V++ 
Sbjct: 61  KDDPADQIYVFFPNEPKPGVKTIRNYVEKMKQENVFAAILVVQQALSAFARSAVQEVSQK 120

Query: 408 FNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           ++++VF+EA+LLVN+ +HVLVP+HELLT + K  LL+R+ V ET+
Sbjct: 121 YHLEVFQEAELLVNIKEHVLVPEHELLTPELKKMLLQRYTVKETQ 165


>ref|XP_004511874.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  172 bits (437), Expect = 4e-41
 Identities = 84/159 (52%), Positives = 119/159 (74%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ +RIR+T+ EMLRDR Y V D EINM   QF  K+GE +KR+D VI+K K+  P D
Sbjct: 7   EITRLYRIRKTVMEMLRDRNYLVGDFEINMSKHQFKEKYGENMKREDLVINKTKKDKPSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEE KVGVK++K+Y  RM ++ VY AI+V +  L+P A+ S+ +++  F+++VF
Sbjct: 67  QIYVFFPEEVKVGVKTMKTYINRMNSENVYRAILVCQTSLTPFARTSVAEISSKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA+LLVN+  HVLVP+H++LT  +K  LL+R+ V ET+
Sbjct: 127 QEAELLVNIKDHVLVPEHQVLTDTEKKTLLERYTVKETQ 165


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  172 bits (436), Expect = 5e-41
 Identities = 84/160 (52%), Positives = 122/160 (76%), Gaps = 1/160 (0%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ FRIR+T+++MLRDRGY V D EI+M  EQF  K+GE +KR+D VI+K K  D  D
Sbjct: 7   EITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIID-VNKCFNMDV 422
           QIYVFFPEE KVG+K +K+Y+ RM ++ V+ AI+VV++ L+P A+  + +  +K F+++V
Sbjct: 67  QIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLEV 126

Query: 423 FEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           F+EA+LLVN+  HVLVP+H+LL  ++K  LL+R+ V ET+
Sbjct: 127 FQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQ 166


>ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  171 bits (434), Expect = 8e-41
 Identities = 80/159 (50%), Positives = 120/159 (75%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E ++ FR+R+TL EML DRGY V D EINM   QF+ K+GE +KR+D V+ K K  +  D
Sbjct: 7   ELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVLQKAKRNNSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEEPKVGVK++K+Y+ RM  + V+ AI++V++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA++LVN+  HVL+P+H LL+ ++K  LL+R+ V ET+
Sbjct: 127 QEAEMLVNIKNHVLIPEHLLLSPEEKKSLLERYTVKETQ 165


>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  171 bits (434), Expect = 8e-41
 Identities = 80/159 (50%), Positives = 120/159 (75%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E ++ FR+R+TL EML DRGY V D EINM   +F+ K+GE +KR+D V+ K K  +  D
Sbjct: 7   ELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAKRNNSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEEPKVGVK++K+Y+ RM  + V+ AI++V++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA++LVN+  HVL+PKH+ LT ++K  LL+R+ V ET+
Sbjct: 127 QEAEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQ 165


>ref|XP_007218418.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
           gi|462414880|gb|EMJ19617.1| hypothetical protein
           PRUPE_ppa011542mg [Prunus persica]
          Length = 206

 Score =  171 bits (434), Expect = 8e-41
 Identities = 81/159 (50%), Positives = 121/159 (76%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ +R+R+T+ +ML+DR Y V D EINM  EQF +K+GE +KR+D  I+K K  D  D
Sbjct: 7   EITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTKRSDSSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEEPKVGVK++K+Y+ RM ++ V  A++V ++ L+P AK  I +++  F+++VF
Sbjct: 67  QIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA+LLVN+ +HVLVP+H +LT ++K  LL+R+ V ET+
Sbjct: 127 QEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQ 165


>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score =  171 bits (432), Expect = 1e-40
 Identities = 82/159 (51%), Positives = 121/159 (76%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ FRIRRT+ +MLRDR Y V D E+NM  EQF  K+GE +KR+D +I+K +  D  D
Sbjct: 7   EITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSRRNDSPD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEE KVGVK++K+Y  RM ++ V  A++VV++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA+LLVN+ +HVLVP+H++LT ++K  LL+R+ V ET+
Sbjct: 127 QEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQ 165


>ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  170 bits (430), Expect = 2e-40
 Identities = 82/159 (51%), Positives = 120/159 (75%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E T+ +RIR+T+  MLRDR Y V D E+NM   +F  K+GE +KR+D VI+K K+  P D
Sbjct: 7   EITRLYRIRKTVMVMLRDRNYLVGDFEVNMSKHEFKEKYGENMKREDLVINKTKKDKPSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFPEE KVGVK++K+Y+ RM ++ VY AI+V +  L+P A+  I +V+  F+++VF
Sbjct: 67  QIYVFFPEEVKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFARTCIAEVSSKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA+LLVN+ +HVLVP+H++LT+ +K  LL+R+ V ET+
Sbjct: 127 QEAELLVNIKEHVLVPEHQVLTETEKKTLLERYTVKETQ 165


>ref|XP_007014514.1| DNA-directed RNA polymerase II, putative isoform 1 [Theobroma
           cacao] gi|590582044|ref|XP_007014515.1| DNA-directed RNA
           polymerase II, putative isoform 1 [Theobroma cacao]
           gi|508784877|gb|EOY32133.1| DNA-directed RNA polymerase
           II, putative isoform 1 [Theobroma cacao]
           gi|508784878|gb|EOY32134.1| DNA-directed RNA polymerase
           II, putative isoform 1 [Theobroma cacao]
          Length = 208

 Score =  169 bits (427), Expect = 5e-40
 Identities = 86/167 (51%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
 Frame = +3

Query: 48  MSEFNGENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGI--KRDDFVIHK 221
           MS  + + TK F+ RRT+ +MLRDRGYSV D +I    +QF+ K G+ I  KRDD +IH 
Sbjct: 1   MSVSDEQITKLFKARRTVLQMLRDRGYSVDDSDIKTTRQQFIEKFGDNIHLKRDDLLIHC 60

Query: 222 CKEKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVN 401
            K   P+DQIYVFFP E KVGV  V++ + RM  D V+NAI+VV+K L+  AK +I ++N
Sbjct: 61  NKGDAPIDQIYVFFPAELKVGVPMVRNCAKRMKADNVFNAILVVQKALTAPAKAAINEIN 120

Query: 402 KCFNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
             F+MDVFEEA+LL N+T+H+ VPKH +LT  +K +LL++++V ET+
Sbjct: 121 SYFHMDVFEEAELLTNITEHMFVPKHTVLTDQEKKKLLEKYRVKETQ 167


>ref|XP_004967757.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Setaria italica]
          Length = 207

 Score =  168 bits (426), Expect = 7e-40
 Identities = 79/166 (47%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
 Frame = +3

Query: 48  MSEFNGENTKFFRIRRTLYEMLRDRGYSVPD-DEINMKFEQFVAKHGEGIKRDDFVIHKC 224
           M+   GE  + +RIRRTL +ML DRGY + + D+I +K E F+ ++G+ ++RDD VI++ 
Sbjct: 1   MASSEGETNRLWRIRRTLMQMLLDRGYMILEKDDIGLKREAFIDRYGDPVRRDDLVINRY 60

Query: 225 KEKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNK 404
           K+ DP DQIYVFFP EPK GVK++++Y  +M  + V+  I+VV++ LS  A+ ++ +V++
Sbjct: 61  KKDDPADQIYVFFPNEPKPGVKTIRNYVEKMKQENVFAGILVVQQALSAFARSAVQEVSQ 120

Query: 405 CFNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
            ++++VF+EA+LLVN+ +HVLVP+HELLT DQK +LL+++ V ET+
Sbjct: 121 KYHLEVFQEAELLVNIKEHVLVPEHELLTLDQKKKLLEQYTVKETQ 166


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  168 bits (426), Expect = 7e-40
 Identities = 84/175 (48%), Positives = 124/175 (70%), Gaps = 1/175 (0%)
 Frame = +3

Query: 21  AFLRTFSAKMSEFNGEN-TKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIK 197
           AF  T + K   F+ E  T+ +RIR+T+ +ML+DR Y V D E+NM    F  K+GE +K
Sbjct: 195 AFCDTTTKKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMK 254

Query: 198 RDDFVIHKCKEKDPLDQIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQA 377
           R+D VI+K K+  P DQIYVFFPEE KVGVK++K+Y+ RM ++ VY AI+V +  L+P A
Sbjct: 255 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFA 314

Query: 378 KHSIIDVNKCFNMDVFEEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           K  + ++   F+++VF+EA+LLVN+ +HVLVP+H++L   +K  LL+R+ V ET+
Sbjct: 315 KTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQ 369


>ref|XP_007013104.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao] gi|508783467|gb|EOY30723.1| Eukaryotic
           rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  168 bits (425), Expect = 9e-40
 Identities = 79/159 (49%), Positives = 122/159 (76%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E  + FRIR+T+ +ML+DRGY V D EI M   QF++K+GE +KR+D VI+K K  D  D
Sbjct: 7   EIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTKRNDNSD 66

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           QIYVFFP+E KVGVK++K+Y+ RM ++ V+ A++VV++ L+P A+  I +++  F+++VF
Sbjct: 67  QIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSKFHLEVF 126

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +E++LLVNV +H LVP+H++LT ++K  LL+R+ V ET+
Sbjct: 127 QESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQ 165


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score =  167 bits (423), Expect = 2e-39
 Identities = 75/159 (47%), Positives = 120/159 (75%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E  + +RI++TL +MLRDRGY + D E+ M  +QF+ KHG+ +KR+D V  K K  D  D
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           Q+Y+FFP+E KVGVK++K Y+ RM ++ V+ AI+VV++ L+P A+  I +++  F+++VF
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVF 125

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA++LVN+ +HVLVP+H++LT ++K  LL+R+ V ET+
Sbjct: 126 QEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQ 164


>gb|AFK38034.1| unknown [Lotus japonicus]
          Length = 206

 Score =  167 bits (423), Expect = 2e-39
 Identities = 79/157 (50%), Positives = 117/157 (74%)
 Frame = +3

Query: 72  TKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLDQI 251
           TK  RIR+T+ +MLRDR Y V D EINM   +F  K+G+ +KR+D  I+K K+  P DQI
Sbjct: 9   TKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTKKDGPSDQI 68

Query: 252 YVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVFEE 431
           YVFFP+EPKVGVK++K+Y+ RM ++ V+ AI+V +  L+P AK  I +++  F ++VF+E
Sbjct: 69  YVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSKFQLEVFQE 128

Query: 432 AQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           A+LLVN+ +HVLVP+H++L + +K  LL+R+ V ET+
Sbjct: 129 AELLVNIKEHVLVPEHQILNETEKKTLLERYTVKETQ 165


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  167 bits (423), Expect = 2e-39
 Identities = 75/159 (47%), Positives = 120/159 (75%)
 Frame = +3

Query: 66  ENTKFFRIRRTLYEMLRDRGYSVPDDEINMKFEQFVAKHGEGIKRDDFVIHKCKEKDPLD 245
           E  + +RI++TL +ML+DRGY + D E+ M  +QF+ KHG+ +KR+D V  K K  D  D
Sbjct: 6   EIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRNDNSD 65

Query: 246 QIYVFFPEEPKVGVKSVKSYSIRMTNDKVYNAIIVVRKGLSPQAKHSIIDVNKCFNMDVF 425
           Q+Y+FFP+E KVGVK++K Y+ RM ++ VY AI+VV++ L+P A+  I +++  F+++VF
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVF 125

Query: 426 EEAQLLVNVTKHVLVPKHELLTKDQKDELLKRFKVTETR 542
           +EA++LVN+ +HVLVP+H++LT ++K  LL+R+ V ET+
Sbjct: 126 QEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQ 164