BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00013912
         (591 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   231   1e-58
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       224   2e-56
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      219   6e-55
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      214   1e-53
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   213   3e-53
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   212   5e-53
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   207   2e-51
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   202   4e-50
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   200   3e-49
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   199   5e-49
ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   189   4e-46
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   189   4e-46
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   184   1e-44
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   181   1e-43
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   181   1e-43
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   181   1e-43
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   179   5e-43
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   178   9e-43
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   175   1e-41
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       174   1e-41

>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  231 bits (589), Expect = 1e-58
 Identities = 117/198 (59%), Positives = 143/198 (72%), Gaps = 2/198 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMNL 182
           TGKETV A+K +  +N      +VQFT + DAELII L NQ   RL+YG  YLKAR+M  
Sbjct: 27  TGKETVYALKIRQQKNGGRAYAIVQFTKSTDAELIIRLTNQ---RLYYGSSYLKAREMEN 83

Query: 183 DIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVDY 362
           DIV KPRTF++++E   +HFGCQ+S EKF VLW   D TV FG+G+RKL F LSH  V+Y
Sbjct: 84  DIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNFGMGMRKLQFLLSHHCVEY 143

Query: 363 KLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPPD 536
           +L+L YENIWQI    PR QT+KYLLIQL+GAPRI+EK  R SG + E+    +F+D PD
Sbjct: 144 RLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRIYEKDVRSSGLVFENPLLNYFMDVPD 203

Query: 537 DQWVRATDFSSSYCIGQS 590
           DQWVR TDF+ S CIGQS
Sbjct: 204 DQWVRTTDFTQSSCIGQS 221


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  224 bits (570), Expect = 2e-56
 Identities = 117/199 (58%), Positives = 144/199 (72%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ TV AIK +  +N   R++ +VQF T E AELII LAN    RLWYGR YL AR M 
Sbjct: 27  TGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAELIIRLANP---RLWYGRSYLLARVME 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  + S+++  +HFGCQISKEKFS LWR  + +V FGLGLR+L F+L++  V+
Sbjct: 84  RDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDFGLGLRRLNFYLTYGPVE 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPP 533
           Y+L+L YEN+WQI    PRGQTAKYLLIQL GAPR++EK  R S +I E+  F +F D P
Sbjct: 144 YRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRVYEKEVRISFDILENPLFNYFKDTP 203

Query: 534 DDQWVRATDFSSSYCIGQS 590
           DDQWVRATDF+ S CIG S
Sbjct: 204 DDQWVRATDFTESCCIGHS 222


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  219 bits (557), Expect = 6e-55
 Identities = 111/198 (56%), Positives = 141/198 (71%), Gaps = 2/198 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMNL 182
           TG+ETV A+K +  + +     +VQFT + DA LII LANQ   RL+YGR YLKAR+M  
Sbjct: 27  TGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGLIIRLANQ---RLYYGRSYLKAREMET 83

Query: 183 DIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVDY 362
           DIV KPR F++++E   ++FGCQ+S+EKF VLW+A + T+ FG G+RKL F LS+    Y
Sbjct: 84  DIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKY 143

Query: 363 KLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKR--DSGNIHEDYAFTFFLDPPD 536
           KLEL YENIWQI  RCP  QT+K+LLIQL+GAPRI+EK    S  + +D    +F D PD
Sbjct: 144 KLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPD 203

Query: 537 DQWVRATDFSSSYCIGQS 590
           DQWVR TDF+ S CIGQS
Sbjct: 204 DQWVRTTDFTRSNCIGQS 221


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  214 bits (545), Expect = 1e-53
 Identities = 109/198 (55%), Positives = 139/198 (70%), Gaps = 2/198 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMNL 182
           TG+ETV A+K +  + +     +VQFT + DA LII LANQ   RL+YGR YLKAR+M  
Sbjct: 27  TGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGLIIRLANQ---RLYYGRSYLKAREMET 83

Query: 183 DIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVDY 362
           DIV KPR F++++E   ++F C +S+EKF VLW+A + T+ FG G+RKL F LS+    Y
Sbjct: 84  DIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKY 143

Query: 363 KLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKR--DSGNIHEDYAFTFFLDPPD 536
           KLEL YENIWQI  RCP  QT+K+LLIQL+GAPRI+EK    S  + +D    +F D PD
Sbjct: 144 KLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPD 203

Query: 537 DQWVRATDFSSSYCIGQS 590
           DQWVR TDF+ S CIGQS
Sbjct: 204 DQWVRTTDFTRSNCIGQS 221


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  213 bits (542), Expect = 3e-53
 Identities = 109/199 (54%), Positives = 137/199 (68%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV A+K + I+    R + +VQFTTT  AE IISLAN    RLWYG  YL AR M+
Sbjct: 27  TGGGTVEALKIREIRTGGARKYAIVQFTTTRAAEQIISLANP---RLWYGHSYLNARPMD 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DI+ +PR+F++++E   +HFG Q SKEKFS +W   + +V FGLG+RKL+F LSH+  +
Sbjct: 84  RDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAE 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPP 533
           YKL L +ENIWQI    PRGQT KYLLIQLYGAPRI+E+    S N+ ED    +F D P
Sbjct: 144 YKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVP 203

Query: 534 DDQWVRATDFSSSYCIGQS 590
           D+QWVR TDF+ S  IG S
Sbjct: 204 DEQWVRTTDFTPSCGIGHS 222


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  212 bits (540), Expect = 5e-53
 Identities = 111/199 (55%), Positives = 138/199 (69%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV A+K +  +    R + +VQFTT E A+ IISLA +  E+LWYGR YL AR+M 
Sbjct: 27  TGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAADTIISLACRT-EKLWYGRSYLNARRME 85

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            D V +PRTFM+++EH  +HFGC+IS EKF+VLWR  + TV FG G+RK+ F LSH   +
Sbjct: 86  QDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEE 145

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPP 533
           Y+LEL YENIW+I   CPR Q  KYLLIQL GAPRIF+K  R    ++E   F FF + P
Sbjct: 146 YRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVP 205

Query: 534 DDQWVRATDFSSSYCIGQS 590
           DDQWVR TDF+ S  IGQS
Sbjct: 206 DDQWVRTTDFTPSNFIGQS 224


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  207 bits (526), Expect = 2e-51
 Identities = 110/199 (55%), Positives = 136/199 (68%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R + +VQFT+   AELIISLANQ   RLWYG  YLKAR   
Sbjct: 27  TGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAELIISLANQ---RLWYGSSYLKARATE 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
           +DIV KPRT+M ++E  ++ FGCQ+S EKF VLW      V FG+G+RK+ FHL +  V+
Sbjct: 84  VDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVE 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPP 533
           Y+LELSYE IWQI   CPR Q+ KYLLIQL GAPRI++K   +SG I ++    FF +  
Sbjct: 144 YRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEAS 203

Query: 534 DDQWVRATDFSSSYCIGQS 590
           DDQWVR TDF+SS  IGQS
Sbjct: 204 DDQWVRTTDFTSSCSIGQS 222


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score =  202 bits (515), Expect = 4e-50
 Identities = 104/199 (52%), Positives = 136/199 (68%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ TV AIK ++ +    RAF ++QFTT   A  ++S AN  +  L YG  YLKAR+M 
Sbjct: 27  TGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSATSMMSRANNILRTLRYGTSYLKAREME 86

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV +PR F++S++   + FGCQISK +FSVLW+ +D  V FG G+RK++F  SH++V 
Sbjct: 87  RDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQ 146

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEK--RDSGNIHEDYAFTFFLDPP 533
           YKLELSYENIW+I    PR +T +YLLIQL GAPR+FE     S NI +D  F FF D P
Sbjct: 147 YKLELSYENIWKIELHRPRNETTRYLLIQLLGAPRVFENDVPTSTNIFDDPLFNFFKDAP 206

Query: 534 DDQWVRATDFSSSYCIGQS 590
           D+QW+RA DF+    IGQS
Sbjct: 207 DEQWIRAIDFTPESRIGQS 225


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  200 bits (508), Expect = 3e-49
 Identities = 107/197 (54%), Positives = 137/197 (69%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQN-TSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ T+ A++ K  ++  S+    VQFT+   AELIISLA Q    LWYG +YLKAR+M+
Sbjct: 27  TGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAELIISLAKQ----LWYGGNYLKAREMD 82

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
           LDI+ KPRTF++S++   +HFG Q+S E+F VLW+A + +VKFG GLRK YF LSH   +
Sbjct: 83  LDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEE 142

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           YKLELS ENIWQI  R PRGQ  K+LLIQL  AP+I+EK  S       A ++F + PDD
Sbjct: 143 YKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVS-------ALSYFKETPDD 195

Query: 540 QWVRATDFSSSYCIGQS 590
           QWVR  DF+ S  IGQS
Sbjct: 196 QWVREIDFTPSCSIGQS 212


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  199 bits (506), Expect = 5e-49
 Identities = 103/197 (52%), Positives = 137/197 (69%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQN-TSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ T+ A++ K  ++  S+    VQFT+ E AE II+L  +++   WYGR+YLKAR+M+
Sbjct: 27  TGEGTIEALEIKQPRSGASMTHAKVQFTSFELAEFIITLCKKKV---WYGRNYLKAREMD 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
           LDI+ KPR F++S++   +HFGCQ+S E+F VLW+A + +VKFG GLRK YF LSH   +
Sbjct: 84  LDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEE 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           YKLELSYENIWQI  + PRGQ  K+LLIQL GAP+I+EK             +F + PDD
Sbjct: 144 YKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEK------DVPVLSYYFKEAPDD 197

Query: 540 QWVRATDFSSSYCIGQS 590
           QWVR  DF+ S  IGQS
Sbjct: 198 QWVREIDFTPSCFIGQS 214


>ref|XP_004498237.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Cicer
           arietinum]
          Length = 1100

 Score =  189 bits (481), Expect = 4e-46
 Identities = 98/201 (48%), Positives = 131/201 (65%), Gaps = 5/201 (2%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ +V AIK +  +    RA+ ++QF T   A  ++SL N+    L YG  YLK R+M 
Sbjct: 29  TGEGSVVAIKIREGKARVQRAYAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMV 88

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV  PRT++ S++   ++FGCQISKE+FS+LWR RD +V    G+RK  F + HD+  
Sbjct: 89  RDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKK 148

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFE----KRDSGNIHEDYAFTFFLD 527
           +K +LSYENIW+I    P G+TAKYLLIQL GAPRIFE       S N++ED    +F +
Sbjct: 149 FKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKE 208

Query: 528 PPDDQWVRATDFSSSYCIGQS 590
            PDDQW+RA DF+   CIGQS
Sbjct: 209 SPDDQWIRAVDFTPFNCIGQS 229


>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
           arietinum]
          Length = 1126

 Score =  189 bits (481), Expect = 4e-46
 Identities = 98/201 (48%), Positives = 131/201 (65%), Gaps = 5/201 (2%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ +V AIK +  +    RA+ ++QF T   A  ++SL N+    L YG  YLK R+M 
Sbjct: 29  TGEGSVVAIKIREGKARVQRAYAIIQFNTANQATHMLSLHNRSSTMLRYGNSYLKIREMV 88

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV  PRT++ S++   ++FGCQISKE+FS+LWR RD +V    G+RK  F + HD+  
Sbjct: 89  RDIVPNPRTYLESLDDVTLYFGCQISKERFSILWRKRDVSVDLSAGMRKWRFCMCHDNKK 148

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFE----KRDSGNIHEDYAFTFFLD 527
           +K +LSYENIW+I    P G+TAKYLLIQL GAPRIFE       S N++ED    +F +
Sbjct: 149 FKFDLSYENIWKIEQYQPWGKTAKYLLIQLIGAPRIFELYVPTSTSTNVYEDPLKNYFKE 208

Query: 528 PPDDQWVRATDFSSSYCIGQS 590
            PDDQW+RA DF+   CIGQS
Sbjct: 209 SPDDQWIRAVDFTPFNCIGQS 229


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  184 bits (468), Expect = 1e-44
 Identities = 98/197 (49%), Positives = 129/197 (65%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R F +VQFT+   A LII++A    ERL+YGR YLKA +M 
Sbjct: 27  TGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHARLIITMA---AERLYYGRSYLKAFEME 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  ++SI +  ++FGCQ+S +K   LW A +  V FG G+RKL+F +S    D
Sbjct: 84  QDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAHNVCVSFGTGMRKLHFSMSWYQKD 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           Y+LELSYENIWQI    P+G ++K+L+IQ+ GAP+IFEK D           F+ D  D+
Sbjct: 144 YRLELSYENIWQIDLHSPQGGSSKFLVIQVIGAPKIFEKEDQPVNFLFGMMDFYSDGSDE 203

Query: 540 QWVRATDFSSSYCIGQS 590
           QW+R TDF+SS CIGQS
Sbjct: 204 QWIRTTDFTSSSCIGQS 220


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca
           subsp. vesca]
          Length = 1119

 Score =  181 bits (460), Expect = 1e-43
 Identities = 97/199 (48%), Positives = 130/199 (65%), Gaps = 3/199 (1%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFVVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMNL 182
           TG+ +V A+K +  ++      ++QF +   AE IISLAN    RLWYGR YL AR  + 
Sbjct: 27  TGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEKIISLANA---RLWYGRSYLNARPAH- 82

Query: 183 DIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVDY 362
           DIV KPRTF++S+   ++H GCQ++K+KFSVLW   + +V FG G+R L F L +    Y
Sbjct: 83  DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGTAEVSVDFGFGMRNLQFRLLYRQKVY 142

Query: 363 KLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKR---DSGNIHEDYAFTFFLDPP 533
           +L+LSYENIWQI     RG++AKYL+IQLYG PRI+++      GN +ED    +F DP 
Sbjct: 143 RLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRIYQQEVCSSGGNGYED--MNYFRDP- 199

Query: 534 DDQWVRATDFSSSYCIGQS 590
            D WVR TDF+   CIGQS
Sbjct: 200 -DDWVRTTDFTPGSCIGQS 217


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  181 bits (459), Expect = 1e-43
 Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R + +VQFT+     LII+ A    ERL+YGR YLKA ++ 
Sbjct: 27  TGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAA---AERLYYGRSYLKAFEVE 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  +++I    + FGCQ+S +KF  LW A+D  V FG+G+RKL+F  S    D
Sbjct: 84  QDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKD 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           Y+LELSYENIWQI    P+G+++K+L+IQ+ GAP+IFEK D           F+ D  D+
Sbjct: 144 YRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDE 203

Query: 540 QWVRATDFSSSYCIGQS 590
           QW+R TDF+SS CIGQS
Sbjct: 204 QWIRTTDFTSSSCIGQS 220


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  181 bits (459), Expect = 1e-43
 Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R + +VQFT+     LII+ A    ERL+YGR YLKA ++ 
Sbjct: 27  TGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAA---AERLYYGRSYLKAFEVE 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  +++I    + FGCQ+S +KF  LW A+D  V FG+G+RKL+F  S    D
Sbjct: 84  QDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKD 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           Y+LELSYENIWQI    P+G+++K+L+IQ+ GAP+IFEK D           F+ D  D+
Sbjct: 144 YRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDE 203

Query: 540 QWVRATDFSSSYCIGQS 590
           QW+R TDF+SS CIGQS
Sbjct: 204 QWIRTTDFTSSSCIGQS 220


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  179 bits (454), Expect = 5e-43
 Identities = 99/197 (50%), Positives = 135/197 (68%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFV-VQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG+ TV A++ K  +    RA+  VQFT    AE II LA     RL+YG  YLKA + +
Sbjct: 27  TGEGTVIALEVKTAK-VGRRAYARVQFTNIRCAETIIDLAKN---RLYYGTSYLKAYESD 82

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
           +DIVQ PRTF + +E+  ++FGCQIS  KFSVLW+    TVKFG G++K++F L H+ V+
Sbjct: 83  IDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGESVTVKFGTGMKKMHFFLRHNSVE 142

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           YK++LSYENIWQI      GQ++K L+IQL+GAPRI++K  SG++     +++F+   DD
Sbjct: 143 YKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPRIYKKL-SGSV-----YSYFMVTQDD 196

Query: 540 QWVRATDFSSSYCIGQS 590
           QWVR TDF+ S  IGQS
Sbjct: 197 QWVRTTDFTQS-LIGQS 212


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  178 bits (452), Expect = 9e-43
 Identities = 95/197 (48%), Positives = 129/197 (65%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R F +VQFT    A  II+ A ++  RL+YGR YL A +++
Sbjct: 27  TGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYARQIITGAAER--RLYYGRSYLNAFEVD 84

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  +++I    ++FGCQ+S +KF  LW A+D  V FG+G+RKL+F  S    D
Sbjct: 85  QDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKD 144

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           Y+LELSYENIWQI    P+G+++K+L+IQ+ GAP+IFEK D           F+ D  D+
Sbjct: 145 YRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIFEKEDQPINLLFGMMDFYSDGSDE 204

Query: 540 QWVRATDFSSSYCIGQS 590
           QW+R TDF+SS CIGQS
Sbjct: 205 QWIRTTDFTSSSCIGQS 221


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
           gi|557094740|gb|ESQ35322.1| hypothetical protein
           EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  175 bits (443), Expect = 1e-41
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 1/197 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAF-VVQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV AIK +  +    R + +VQFT    A  II+ A    E L+YGR YLKA ++ 
Sbjct: 27  TGSGTVYAIKVRQPKKGGPRVYAIVQFTNERHARWIITRAE---EGLYYGRSYLKASEVE 83

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIV KPR  ++ I    I+FGCQ++ +K SVLW A++  V FG G+RKL+F +S    D
Sbjct: 84  QDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQNVCVSFGTGMRKLHFSISWYEKD 143

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           Y+LEL YENIW+I    P+G+ +K+L+IQ+ GAP+IFEK D           FF D  D+
Sbjct: 144 YRLELPYENIWRIDLYSPQGRASKFLVIQVIGAPKIFEKEDQPVNLLFGMLDFFSDGSDE 203

Query: 540 QWVRATDFSSSYCIGQS 590
           QW+R TDF+SS CIGQS
Sbjct: 204 QWIRTTDFTSSSCIGQS 220


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  174 bits (442), Expect = 1e-41
 Identities = 95/192 (49%), Positives = 132/192 (68%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3   TGKETVRAIKFKNIQNTSLRAFV-VQFTTTEDAELIISLANQQIERLWYGRHYLKARKMN 179
           TG  TV A++ K  +    RAF  VQF   + AE II LA++    L+YG  YLKA +M 
Sbjct: 27  TGNGTVYALEVKQSKG-GRRAFAKVQFANNKSAEFIIDLASKG---LYYGPSYLKAWEMK 82

Query: 180 LDIVQKPRTFMNSIEHTIIHFGCQISKEKFSVLWRARDATVKFGLGLRKLYFHLSHDHVD 359
            DIVQ PRT++  ++   ++FGCQIS +KF+VL  ++D ++KFG+GL+K+YF LSH   D
Sbjct: 83  TDIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-SKDVSIKFGIGLKKIYFFLSHASAD 140

Query: 360 YKLELSYENIWQIHYRCPRGQTAKYLLIQLYGAPRIFEKRDSGNIHEDYAFTFFLDPPDD 539
           YKL+LSYENIWQ+    P GQ A++LL+QL+GAPRI+++       ED  ++FF + PDD
Sbjct: 141 YKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRL------EDSCYSFFKETPDD 194

Query: 540 QWVRATDFSSSY 575
           QWVR TDF+ S+
Sbjct: 195 QWVRTTDFTPSW 206