BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00013891
         (528 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              245   4e-63
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   245   4e-63
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   221   6e-56
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   219   2e-55
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   219   3e-55
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   219   3e-55
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   217   2e-54
ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar...   217   2e-54
gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]            217   2e-54
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   216   2e-54
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   215   6e-54
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]           215   6e-54
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]            215   6e-54
ref|XP_007018506.1| RNA-dependent RNA polymerase family protein,...   213   3e-53
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   212   5e-53
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]   209   3e-52
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   209   3e-52
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   206   3e-51
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ...   206   3e-51
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            206   3e-51

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  245 bits (626), Expect = 4e-63
 Identities = 116/175 (66%), Positives = 143/175 (81%)
 Frame = +1

Query: 1    NATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEP 180
            NATYV+A+E+FVGNAKY IFFPIKG RSLADEMANSDFDGDMY+VSRN QLL++F+ SEP
Sbjct: 597  NATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEP 656

Query: 181  WKRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
            W R  S + V  + P +FS ++LE +LFQ FLTTRF  S  +G+A+D+WL FMDRLLTL 
Sbjct: 657  WMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLR 716

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSY 525
            +DC+ EK+CLKRKML+L DIYY ALDAPK+ +K+ V  ELKA+ +PH+M RE SY
Sbjct: 717  DDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSY 771


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  245 bits (626), Expect = 4e-63
 Identities = 116/175 (66%), Positives = 143/175 (81%)
 Frame = +1

Query: 1    NATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEP 180
            NATYV+A+E+FVGNAKY IFFPIKG RSLADEMANSDFDGDMY+VSRN QLL++F+ SEP
Sbjct: 611  NATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEP 670

Query: 181  WKRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
            W R  S + V  + P +FS ++LE +LFQ FLTTRF  S  +G+A+D+WL FMDRLLTL 
Sbjct: 671  WMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLR 730

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSY 525
            +DC+ EK+CLKRKML+L DIYY ALDAPK+ +K+ V  ELKA+ +PH+M RE SY
Sbjct: 731  DDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESSY 785


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  221 bits (564), Expect = 6e-56
 Identities = 109/171 (63%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYV+ +EDFVGNAKY IFFP KG RSLADEM+  DFDGDM+FVSRNP+LLE+FK +EPW
Sbjct: 545  ATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPW 604

Query: 184  KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLGE 363
                S   V +R P+EFS E+LE +LF+ FL  RF PS T+GVA+DSWLA MDRLLTLG 
Sbjct: 605  TPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGN 664

Query: 364  DCAPEKDCLKRKMLQLVDIYYVALDAPKT-AVKIEVPNELKAKMYPHYMER 513
            DC  E  C+K+ +  L+DIYY ALDAPK    KIEVP  LKA+++PH+ME+
Sbjct: 665  DCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEK 715


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  219 bits (559), Expect = 2e-55
 Identities = 106/177 (59%), Positives = 134/177 (75%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+E++VGN+KY +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLEHFKPSEPW
Sbjct: 651  ATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHFKPSEPW 710

Query: 184  KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
                P SK     R P++ S E+LE +LF+ FL   FH S  +G+A+DSWL  MDRLL L
Sbjct: 711  VSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLKAGFHASNVIGIAADSWLTIMDRLLIL 769

Query: 358  GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            G++ A EK  +K+KML+L+DIYY ALDAPK   K+ +PNEL+  ++PHYMERE  +K
Sbjct: 770  GDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHYMEREKKFK 826


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  219 bits (558), Expect = 3e-55
 Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYV+ +EDFVGNAKY IFFP KG RSLADEM+  DFDGDM+FVSRNPQLLE FK +EPW
Sbjct: 545  ATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPW 604

Query: 184  KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLGE 363
                S   V +R P+EFS E+LE +LF+ FL  RF PS T+GVA+DSWLA MDRLLTLG 
Sbjct: 605  TPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGN 664

Query: 364  DCAPEKDCLKRKMLQLVDIYYVALDAPKT-AVKIEVPNELKAKMYPHYM 507
            DCA E  C+K  +  L+DIYY ALDAPK    +IEVP  LKA+++PH+M
Sbjct: 665  DCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM 713


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  219 bits (558), Expect = 3e-55
 Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYV+ +EDFVGNAKY IFFP KG RSLADEM+  DFDGDM+FVSRNPQLLE FK +EPW
Sbjct: 567  ATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPW 626

Query: 184  KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLGE 363
                S   V +R P+EFS E+LE +LF+ FL  RF PS T+GVA+DSWLA MDRLLTLG 
Sbjct: 627  TPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGN 686

Query: 364  DCAPEKDCLKRKMLQLVDIYYVALDAPKT-AVKIEVPNELKAKMYPHYM 507
            DCA E  C+K  +  L+DIYY ALDAPK    +IEVP  LKA+++PH+M
Sbjct: 687  DCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLKAELFPHFM 735


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  217 bits (552), Expect = 2e-54
 Identities = 106/177 (59%), Positives = 131/177 (74%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+E++VGN+KY +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLE FKPSEPW
Sbjct: 659  ATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSEPW 718

Query: 184  KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
                P SK     R P +FS E+LE +LF  FL  RFH S  +G+A+DSWL  MDR LTL
Sbjct: 719  VSLSPPSKSNST-RKPIDFSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTL 777

Query: 358  GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            G++ A EK  +KRKML L+DIYY ALDA K  VK+ +P+ LK  ++PHYMER+  +K
Sbjct: 778  GDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKKFK 834


>ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
            gi|322967571|sp|O82189.2|RDR4_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 4;
            Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
            4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA
            polymerase family protein [Arabidopsis thaliana]
          Length = 927

 Score =  217 bits (552), Expect = 2e-54
 Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVK++E +VGN+KYG+FFP KG RSL DE+A  DFDGDMYF+SRNP+LLEH+KPSEPW
Sbjct: 647  ATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPW 706

Query: 184  KRPCSKQKVID-RNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
                 + K+   R P+E S E LE +LF+ FL T F PS  +G A+DSWLA MDR LTLG
Sbjct: 707  VSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLG 766

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            ++   EK  +K+KML+L DIYY A+DAPKT  ++ +P ++K  ++PHYMER  ++K
Sbjct: 767  DENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKTFK 822


>gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
          Length = 905

 Score =  217 bits (552), Expect = 2e-54
 Identities = 101/176 (57%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVK++E +VGN+KYG+FFP KG RSL DE+A  DFDGDMYF+SRNP+LLEH+KPSEPW
Sbjct: 643  ATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPW 702

Query: 184  KRPCSKQKVID-RNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
                 + K+   R P+E S E LE +LF+ FL T F PS  +G A+DSWLA MDR LTLG
Sbjct: 703  VSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLG 762

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            ++   EK  +K+KML+L DIYY A+DAPKT  ++ +P ++K  ++PHYMER  ++K
Sbjct: 763  DENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMERNKTFK 818


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  216 bits (551), Expect = 2e-54
 Identities = 103/177 (58%), Positives = 133/177 (75%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+E++VGN+K+ +FFP KG RSL DE+A  DFDGD+YF+SRNP+LLEHFKPSEPW
Sbjct: 654  ATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDIYFISRNPELLEHFKPSEPW 713

Query: 184  KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
                P SK     R P +FS E+LE +LF+ FL   FH S  +G+A+DSWL  MDR L L
Sbjct: 714  VSLTPPSKSNSA-RGPCQFSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLIL 772

Query: 358  GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            G++ A EK  +K+KML+L+DIYY ALDAPK   K+ +PNEL+  ++PHYMER+  +K
Sbjct: 773  GDESADEKAEMKQKMLELIDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKKFK 829


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  215 bits (547), Expect = 6e-54
 Identities = 103/177 (58%), Positives = 134/177 (75%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+E++VGN+K+ +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLE+FKPSEPW
Sbjct: 647  ATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 706

Query: 184  KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
                P SK     R P++ S E+LE +LF+ FLT  FH S  +G+A+DSWL  MDR L L
Sbjct: 707  VSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLIL 765

Query: 358  GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            G+D A EK  +K+KML+L+DIYY ALDAPK   K+ +PN+LK  ++PHYMER+  ++
Sbjct: 766  GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKKFQ 822


>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
          Length = 339

 Score =  215 bits (547), Expect = 6e-54
 Identities = 103/177 (58%), Positives = 134/177 (75%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4   ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
           ATYVKA+E++VGN+K+ +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLE+FKPSEPW
Sbjct: 9   ATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 68

Query: 184 KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
               P SK     R P++ S E+LE +LF+ FLT  FH S  +G+A+DSWL  MDR L L
Sbjct: 69  VSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLIL 127

Query: 358 GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
           G+D A EK  +K+KML+L+DIYY ALDAPK   K+ +PN+LK  ++PHYMER+  ++
Sbjct: 128 GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKKFQ 184


>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
          Length = 929

 Score =  215 bits (547), Expect = 6e-54
 Identities = 103/177 (58%), Positives = 134/177 (75%), Gaps = 2/177 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+E++VGN+K+ +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLE+FKPSEPW
Sbjct: 567  ATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPW 626

Query: 184  KR--PCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTL 357
                P SK     R P++ S E+LE +LF+ FLT  FH S  +G+A+DSWL  MDR L L
Sbjct: 627  VSLTPPSKSNS-GRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLIL 685

Query: 358  GEDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
            G+D A EK  +K+KML+L+DIYY ALDAPK   K+ +PN+LK  ++PHYMER+  ++
Sbjct: 686  GDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKKFQ 742


>ref|XP_007018506.1| RNA-dependent RNA polymerase family protein, putative isoform 2,
           partial [Theobroma cacao] gi|508723834|gb|EOY15731.1|
           RNA-dependent RNA polymerase family protein, putative
           isoform 2, partial [Theobroma cacao]
          Length = 292

 Score =  213 bits (541), Expect = 3e-53
 Identities = 102/176 (57%), Positives = 132/176 (75%)
 Frame = +1

Query: 1   NATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEP 180
           NA YV+++ ++VG+AKY IFFP KG RSLADEMA  DFDGD YFVS+NPQLL++FK SEP
Sbjct: 29  NARYVESLNEYVGHAKYAIFFPCKGPRSLADEMAGGDFDGDTYFVSKNPQLLDYFKVSEP 88

Query: 181 WKRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
           W    S   V  + P EFS E+LE +LF+ FL TRF PS  M +ASD+ +A MDRLLTL 
Sbjct: 89  WTENSSTCGVSTKGPCEFSNEELEDELFKLFLRTRFQPSNAMAIASDNCMAVMDRLLTLE 148

Query: 361 EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSYK 528
           +  +PE+  LK+ + +L+D+YY +LDAPKT  KIEVP EL+A  +PHY+ER+ S+K
Sbjct: 149 DSNSPEEFLLKKNLQRLIDLYYESLDAPKTGKKIEVPRELRADAFPHYLERQKSFK 204


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  212 bits (539), Expect = 5e-53
 Identities = 96/174 (55%), Positives = 130/174 (74%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATY++ + + VGNAK+ IFF  +G RS ADE+AN DFDGDMY++S NP+LL +FK   PW
Sbjct: 660  ATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPPW 719

Query: 184  KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLGE 363
            +R  S++    R P E+S ++LE++LF  FL +RFHPS     A+DSWL +MDRLLTLG+
Sbjct: 720  ERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLGD 779

Query: 364  DCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSY 525
            +CA EK CL +KML+L D+YY A+DAPK+  K+EVP +LK + YPH+MER + Y
Sbjct: 780  ECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKPERYPHFMERTYQY 833


>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
          Length = 898

 Score =  209 bits (532), Expect = 3e-52
 Identities = 106/176 (60%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            A YVK +E+F+GNAKYGIFF  KG RS A E+A  DFDGD Y+VSRNP+LL  FK SEPW
Sbjct: 664  AVYVKGLEEFIGNAKYGIFFSTKGQRSAAYEIATGDFDGDTYWVSRNPELLTFFKASEPW 723

Query: 184  KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLGE 363
            KR         R+P +FS+ +LE +LFQ FL +R  PS  MG A+DSWL +MDRLLTLG+
Sbjct: 724  KRVYPAPDAEKRDPRKFSSSELERELFQLFLDSR-TPSYNMGTAADSWLTYMDRLLTLGD 782

Query: 364  DCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMER--EHSY 525
            D A EK+ LK KM++LVDIYY ALDAPK+  KI VP++LKA+++PH+ME+  E SY
Sbjct: 783  DRAAEKNSLKTKMIKLVDIYYDALDAPKSGKKINVPDDLKAELFPHHMEKAIEKSY 838


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  209 bits (532), Expect = 3e-52
 Identities = 105/175 (60%), Positives = 127/175 (72%), Gaps = 1/175 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVK +E  VGNAKYGIFF  KG RS+ADEM   DFDGD+Y+VSRNPQLLE +KPSEPW
Sbjct: 1073 ATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPW 1132

Query: 184  -KRPCSKQKVIDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
             +   S +K   R P++ S EDLE  LF+ FLTTRF PS  M  A+D+WLA+MD  LTLG
Sbjct: 1133 IEASISTKKNPSRCPSDHSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLG 1192

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMEREHSY 525
            +    EK+ +K K+LQLVD+YY ALDA K  VK++VP ELK   +PHYM +  SY
Sbjct: 1193 DSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGKNRSY 1247


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  206 bits (524), Expect = 3e-51
 Identities = 98/172 (56%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+ED+VGNAK+ +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLEHFKPSEPW
Sbjct: 658  ATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPW 717

Query: 184  KRPCSKQKV-IDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
                   K+   R P+E S E+LE +LF+ FL  RF     +G+A+D WL  MD  LTLG
Sbjct: 718  VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 777

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMERE 516
            ++ A EK   K+ +L+L+DIYY ALDAPK   K+++P +L+ K +PHYMER+
Sbjct: 778  DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERD 829


>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 934

 Score =  206 bits (524), Expect = 3e-51
 Identities = 98/172 (56%), Positives = 127/172 (73%), Gaps = 1/172 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+ED+VGN+KY +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLE+FKPSEPW
Sbjct: 600  ATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEYFKPSEPW 659

Query: 184  KRPCSKQKVID-RNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
                   K+   R P+E S E+LE +LF+ FL  RF     +G+A+D WL  MD LLTLG
Sbjct: 660  VSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPLLTLG 719

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMERE 516
            ++ A EK   K+ +L+L+DIYY ALDAPK   K+++P +L+ K +PHYMER+
Sbjct: 720  DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERD 771


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  206 bits (524), Expect = 3e-51
 Identities = 98/172 (56%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
 Frame = +1

Query: 4    ATYVKAMEDFVGNAKYGIFFPIKGCRSLADEMANSDFDGDMYFVSRNPQLLEHFKPSEPW 183
            ATYVKA+ED+VGNAK+ +FFP KG RSL DE+A  DFDGDMYF+SRNP+LLEHFKPSEPW
Sbjct: 632  ATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPW 691

Query: 184  KRPCSKQKV-IDRNPNEFSAEDLESQLFQRFLTTRFHPSRTMGVASDSWLAFMDRLLTLG 360
                   K+   R P+E S E+LE +LF+ FL  RF     +G+A+D WL  MD  LTLG
Sbjct: 692  VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLG 751

Query: 361  EDCAPEKDCLKRKMLQLVDIYYVALDAPKTAVKIEVPNELKAKMYPHYMERE 516
            ++ A EK   K+ +L+L+DIYY ALDAPK   K+++P +L+ K +PHYMER+
Sbjct: 752  DESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERD 803