BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00013267
         (3467 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacillifo...   349   e-132
gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subc...   348   e-132
tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacillifo...   348   e-131
gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subc...   344   e-130
tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacillifo...   344   e-130
emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group] gi...   347   e-130
gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]     341   e-129
emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]         346   e-112
gb|AGC25937.1| hypothetical protein, partial [Piper DNA virus 1]      296   e-108
gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subc...   347   1e-98
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   259   4e-98
gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subc...   345   5e-98
gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-c...   345   2e-97
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               260   5e-96
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   259   5e-96
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               259   2e-95
emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]               249   7e-95
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...   257   7e-95
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|...   251   9e-95
gb|AHB61260.1| polyprotein [Rubus yellow net virus]                   238   1e-94

>tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1718

 Score =  349 bits (895), Expect(4) = e-132
 Identities = 167/270 (61%), Positives = 214/270 (79%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
            I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 1273 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 1332

Query: 313  EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
            E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 1333 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 1392

Query: 493  SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
            SIEWT FTCP+GH+EWLVMP GLKNAP+I QRKM +IF +++ F++ YIDD+L FS++  
Sbjct: 1393 SIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYK 1452

Query: 673  EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
            EH  HL+I   +   +G+I+ KKKM + K++I FLG  IG+G+I LQ HIA+  LEFPD 
Sbjct: 1453 EHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILEFPDA 1512

Query: 853  LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 1513 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 1542



 Score =  136 bits (342), Expect(4) = e-132
 Identities = 70/144 (48%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D   LGWGA+L  +P K++ K+ E++CRYASG Y+ K  V + 
Sbjct: 1573 LKPLELPLEESYFIIETDASQLGWGAVLKQRPTKYSSKSEEKVCRYASGSYKLK-TVGNT 1631

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+LA+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 1632 DREILAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWILFEDIIT 1688

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 1689 GNGYKVIFEHIKGKDNHLPDLLSR 1712



 Score = 36.2 bits (82), Expect(4) = e-132
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +2

Query: 26   YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
            Y  + S++DIE++I ++E + I+GE  ++YW+K+
Sbjct: 1238 YRDIKSKRDIEKIIQRLEDIQIIGEIPMKYWEKN 1271



 Score = 25.8 bits (55), Expect(4) = e-132
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     QR FN EDIKLV+
Sbjct: 1544 YAKLRKNGQRYFNSEDIKLVR 1564


>gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 730

 Score =  348 bits (892), Expect(4) = e-132
 Identities = 165/270 (61%), Positives = 215/270 (79%)
 Frame = +1

Query: 133 IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
           I CK++IINPEY ++T+ I A  +D+++FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 106 IECKINIINPEYIIKTSPIEATPKDIKEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 165

Query: 313 EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
           E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 166 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 225

Query: 493 SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
           SIEWT FTCP+GH+EWLVMP GLKNAP+I QRKM +IF +++ F++ YIDD+L FS++  
Sbjct: 226 SIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYK 285

Query: 673 EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
           EH  HL+I   +   +G+I+ KKKM + K++I FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 286 EHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDA 345

Query: 853 LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
           + + K++QQFLGLVNYAR++I +L K+AGP
Sbjct: 346 MNDKKKLQQFLGLVNYARNYINNLAKLAGP 375



 Score =  134 bits (338), Expect(4) = e-132
 Identities = 71/144 (49%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 406  LKPLELPLEESYFIIETDASQYGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 464

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 465  DREIMAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWVLFEDIIT 521

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 522  GNGYKVIFEHIKGKDNNLPDMLSR 545



 Score = 36.2 bits (82), Expect(4) = e-132
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE++I ++E + I+GE  ++YW+K+
Sbjct: 71  YRDIKSKRDIEKIIQRLEDIQIIGEIPMKYWEKN 104



 Score = 27.3 bits (59), Expect(4) = e-132
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK    SQR FN EDIKLV+
Sbjct: 377  YAKLRKNSQRYFNSEDIKLVR 397


>tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1718

 Score =  348 bits (892), Expect(4) = e-131
 Identities = 166/270 (61%), Positives = 214/270 (79%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
            I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 1273 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 1332

Query: 313  EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
            E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 1333 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 1392

Query: 493  SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
            SIEWT FTCP+GH+EWLVMP GLKNAP+I QRKM +IF +++ F++ YIDD+L FS++  
Sbjct: 1393 SIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYK 1452

Query: 673  EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
            EH  HL+I   +   +G+I+ KKKM + K++I FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 1453 EHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDA 1512

Query: 853  LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 1513 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 1542



 Score =  134 bits (336), Expect(4) = e-131
 Identities = 71/144 (49%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 1573 LKPLELPLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 1631

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 1632 DREIMAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWVLFEDIIT 1688

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 1689 GNGYKVIFEHIKGKDNNLPDMLSR 1712



 Score = 33.9 bits (76), Expect(4) = e-131
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 26   YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
            Y  + S++DIE++I ++E + I+GE   +YW K+
Sbjct: 1238 YRDIKSKRDIEKIIQRLEDIQIIGEIPXKYWXKN 1271



 Score = 25.8 bits (55), Expect(4) = e-131
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     QR FN EDIKLV+
Sbjct: 1544 YAKLRKNGQRYFNSEDIKLVR 1564


>gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 792

 Score =  344 bits (883), Expect(4) = e-130
 Identities = 163/270 (60%), Positives = 213/270 (78%)
 Frame = +1

Query: 133 IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
           I CK++I+NPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 168 IECKINILNPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 227

Query: 313 EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
           E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 228 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 287

Query: 493 SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
           SIEWT FTCP+GH+EWLVMP GLKNAP++ QRKM +IF  ++ FV+ YIDD+L FSK+  
Sbjct: 288 SIEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYK 347

Query: 673 EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
           +H  HL++   +   +G+I+ KKKM + K+++ FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 348 DHIAHLELFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDA 407

Query: 853 LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
           + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 408 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 437



 Score =  135 bits (339), Expect(4) = e-130
 Identities = 71/144 (49%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 468  LKPLELPLEESYFIIETDASQQGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 526

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 527  DREIMAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWILFEDIIT 583

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 584  GNGYRVIFEHIKGKDNSLPDMLSR 607



 Score = 35.8 bits (81), Expect(4) = e-130
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE+++ ++E + I+GE  ++YW+K+
Sbjct: 133 YRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKN 166



 Score = 24.6 bits (52), Expect(4) = e-130
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     Q+ FN EDIKLV+
Sbjct: 439  YAKLRKNGQKYFNSEDIKLVR 459


>tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
          Length = 1711

 Score =  344 bits (882), Expect(4) = e-130
 Identities = 164/270 (60%), Positives = 212/270 (78%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
            I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 1266 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 1325

Query: 313  EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
            E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 1326 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 1385

Query: 493  SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
            SIEWT FTCP+GH+EWLVMP GLKNAP++ QRKM +IF  ++ FV+ YIDD+L FSK+  
Sbjct: 1386 SIEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYK 1445

Query: 673  EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
             H  HL++   +   +G+I+ KKKM + K+++ FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 1446 XHIAHLELFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDA 1505

Query: 853  LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 1506 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 1535



 Score =  135 bits (339), Expect(4) = e-130
 Identities = 71/144 (49%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 1566 LKPLELPLEESYFIIETDASQQGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 1624

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 1625 DREIMAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWILFEDIIT 1681

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 1682 GNGYRVIFEHIKGKDNSLPDMLSR 1705



 Score = 35.8 bits (81), Expect(4) = e-130
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +2

Query: 26   YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
            Y  + S++DIE+++ ++E + I+GE  ++YW+K+
Sbjct: 1231 YRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKN 1264



 Score = 24.6 bits (52), Expect(4) = e-130
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     Q+ FN EDIKLV+
Sbjct: 1537 YAKLRKNGQKYFNSEDIKLVR 1557


>emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group]
           gi|116310779|emb|CAH67571.1| H0315A08.1 [Oryza sativa
           Indica Group]
          Length = 685

 Score =  347 bits (891), Expect(4) = e-130
 Identities = 166/270 (61%), Positives = 215/270 (79%)
 Frame = +1

Query: 133 IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
           I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 168 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 227

Query: 313 EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
           E VRG+SRMVINYKRLN+NT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 228 EEVRGKSRMVINYKRLNNNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 287

Query: 493 SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
           SIEWT FTCP+GH+EWLVMP GLKNAP+I QRKM +IF +++ F++ YIDD+L FS++  
Sbjct: 288 SIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYK 347

Query: 673 EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
           EH  HL+I I +   +G+I+ KKKM + K++I FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 348 EHIAHLEIFIRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDA 407

Query: 853 LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
           + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 408 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 437



 Score =  130 bits (328), Expect(4) = e-130
 Identities = 70/144 (48%), Positives = 98/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 468  LKPLELPLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 526

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+ T+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 527  DREIMAIINAINAFRLYLGFK-EFTVITDCEAICRYYNQLN--SKKSSTRRWVLFEDIIT 583

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 584  GNGYKVIFEHIKGKDNNLPDMLSR 607



 Score = 35.0 bits (79), Expect(4) = e-130
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE++I ++E + I+GE  ++YW K+
Sbjct: 133 YRDIKSKRDIEKIIQRLEDIQIIGEIPIKYWGKN 166



 Score = 25.8 bits (55), Expect(4) = e-130
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     QR FN EDIKLV+
Sbjct: 439  YAKLRKNGQRYFNSEDIKLVR 459


>gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1326

 Score =  341 bits (875), Expect(4) = e-129
 Identities = 166/279 (59%), Positives = 214/279 (76%)
 Frame = +1

Query: 106  PKILG*RLKIFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKS 285
            P I   +  I CK++IINPEY ++T+ I A  +D+E FKMHI ELL+LG IR S SPH+S
Sbjct: 839  PMIYWEKNAIECKINIINPEYIIKTSPIEATPKDIEQFKMHIEELLKLGAIRESRSPHRS 898

Query: 286  SAFIVRKHSEIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
            +AFIVR H+E VRG+SRMV NYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+G
Sbjct: 899  AAFIVRNHAEEVRGKSRMVKNYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKTG 958

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            FWQVKM  ESIEWT FTCP+GH+EWLVMP GLKNAP+I QRKM +IF +++ F++ YI+D
Sbjct: 959  FWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIND 1018

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            +L FS++  EH  HL+I   +   +G+I+ KKKM + K++I FLG  I +G+I LQ HIA
Sbjct: 1019 LLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIREGKIHLQEHIA 1078

Query: 826  QMALEFPDKLENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            +  L+FPD + + KQ+QQFLGLVNYAR+ I +L K+AGP
Sbjct: 1079 KKILQFPDAINDKKQLQQFLGLVNYARNHINNLAKLAGP 1117



 Score =  134 bits (336), Expect(4) = e-129
 Identities = 71/144 (49%), Positives = 99/144 (68%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ 
Sbjct: 1148 LKPLELPLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNT 1206

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E++A+  A+++F L++  K E T+RT+CEAI  +YN++N  SK+SS RRW+ F D   
Sbjct: 1207 DREIMAIINAINAFRLYLGFK-EFTVRTDCEAICRYYNQLN--SKKSSTRRWVLFEDIIT 1263

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G  + FEHIKGK+N   D+LSR
Sbjct: 1264 GNGYKVIFEHIKGKDNNLPDMLSR 1287



 Score = 33.5 bits (75), Expect(4) = e-129
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y    S++DIE++I ++E + I+GE  + YW+K+
Sbjct: 813 YRDFKSKRDIEKIIQRLEDIQIIGEIPMIYWEKN 846



 Score = 25.4 bits (54), Expect(4) = e-129
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLV 1000
            +AK     QR FN EDIKLV
Sbjct: 1119 YAKLRKNGQRYFNSEDIKLV 1138


>emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]
          Length = 429

 Score =  346 bits (888), Expect(4) = e-112
 Identities = 165/270 (61%), Positives = 214/270 (79%)
 Frame = +1

Query: 133 IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
           I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 57  IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 116

Query: 313 EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
           E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 117 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 176

Query: 493 SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
           SIEWT FTCP+GH+EWLVMP GLKNAP+I QRK+ +IF +++ F++ YIDD+L FS++  
Sbjct: 177 SIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKIQNIFNENQEFILVYIDDLLVFSRTYK 236

Query: 673 EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
           EH  HL+I   +   +G+I+ KKKM + K++I FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 237 EHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDA 296

Query: 853 LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
           + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 297 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 326



 Score = 71.2 bits (173), Expect(4) = e-112
 Identities = 34/70 (48%), Positives = 50/70 (71%)
 Frame = +3

Query: 1038 LQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSIDTE 1217
            L+LPL+  Y IIE+D    GWGAIL  +P KF+ K+ E+ICRYASG Y+ K  V++ D E
Sbjct: 360  LELPLEESYFIIETDASQHGWGAILKQRPTKFSAKSEEKICRYASGSYKLK-TVNNTDRE 418

Query: 1218 LLAVSYALDS 1247
            ++A+  A+++
Sbjct: 419  IMAIINAINA 428



 Score = 36.2 bits (82), Expect(4) = e-112
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE++I ++E + I+GE  ++YW+K+
Sbjct: 22  YRDIKSKRDIEKIIQRLEDIQIIGEIPMKYWEKN 55



 Score = 25.8 bits (55), Expect(4) = e-112
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     QR FN EDIKLV+
Sbjct: 328  YAKLRKNGQRYFNSEDIKLVR 348


>gb|AGC25937.1| hypothetical protein, partial [Piper DNA virus 1]
          Length = 2027

 Score =  296 bits (758), Expect(4) = e-108
 Identities = 149/266 (56%), Positives = 190/266 (71%)
 Frame = +1

Query: 145  LDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHSEIVR 324
            L+I NP+  +RTA +    +D+E+FK  I ELL L +IRRS SPH+S+AFIVR H+E  R
Sbjct: 910  LNIKNPDLIIRTANLEYTPEDIEEFKKQIKELLDLKLIRRSTSPHRSAAFIVRNHAEQKR 969

Query: 325  GESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPESIEW 504
            G++R+V NYKRLNDNT +D Y++P K  ++N IQ  KIFSKFDLKSG+ Q+KM  E   W
Sbjct: 970  GKARIVYNYKRLNDNTHDDAYNLPHKDSILNLIQNKKIFSKFDLKSGYNQIKMKEEDRPW 1029

Query: 505  TTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR*EHRG 684
            T FTCPEG FEW V+ FGLKNAP+I QR MD +F K++ F I YIDDIL  S +  EH  
Sbjct: 1030 TAFTCPEGLFEWNVLSFGLKNAPAIFQRFMDSLFKKYE-FCIVYIDDILVASDTVQEHIK 1088

Query: 685  HLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDKLENL 864
            HL++V       GI+I KKK  + K  I FLG+ IG G+I+LQPHI   ALE+PDK+EN 
Sbjct: 1089 HLELVFKTIKEAGIVISKKKTEIAKTYINFLGLKIGKGQIELQPHIVTKALEYPDKIENK 1148

Query: 865  KQIQQFLGLVNYARSFIKDLGKIAGP 942
             ++Q FLGL+NYAR FI +L K+ GP
Sbjct: 1149 NKLQSFLGLLNYARKFIPNLSKLVGP 1174



 Score =  125 bits (314), Expect(4) = e-108
 Identities = 65/144 (45%), Positives = 96/144 (66%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            L  L+LPL+  Y +IE D    GWGAILI KP+++ EK+TE+IC YASG + +  N +S+
Sbjct: 1205 LKPLELPLENYYKVIEVDSSQDGWGAILITKPNEYAEKDTEKICAYASGNF-KNNNWTSL 1263

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+  V  A+++F+L++   ++ T+RT+CE IV F    N +S++ + +RWLNF +   
Sbjct: 1264 DMEIQGVINAINTFKLYL--NKKFTLRTDCENIVKFMK--NENSRKHNSKRWLNFQNAIQ 1319

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G ++ FEHI GK N  ADILSR
Sbjct: 1320 GMGYVVKFEHISGKSNTLADILSR 1343



 Score = 22.3 bits (46), Expect(4) = e-108
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 35  LMSEQDIEQLISKIEKLGILGENILR 112
           +M E     ++ ++EKLG++GE++ +
Sbjct: 876 IMDEVHNIPIMRELEKLGLIGEDLAK 901



 Score = 21.6 bits (44), Expect(4) = e-108
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            ++K     Q  FN ED++LVQ
Sbjct: 1176 YSKLRKNGQIYFNNEDVRLVQ 1196



 Score = 61.2 bits (147), Expect = 3e-06
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
 Frame = +1

Query: 1912 YDERLKQEKIRFGNQELLVFPRGKMSFKEFSHITLSKEQKCILDNLWISFNKKDQKYFLA 2091
            +DE +K     FG  +L  F   K  +    H+TL   Q+ +LDN+W   N K       
Sbjct: 1430 FDEPVKL--YNFGPYQLFSFRENK--YXPPDHVTLDDNQQVLLDNIW---NCKSVFQKQK 1482

Query: 2092 CMNSLSEHFHQTKT-----HFKFYVVFKGNLPGIWIFHTWIEVLDSIKDFKNPLFKGFNN 2256
            C+ +LS++    +      +F  YVV +G+  G+++   W     +I+    P +KGF  
Sbjct: 1483 CLQALSQYMSSIQKKPASKNFSHYVVTQGSNTGVFV--KWASAKRAIEGHDWPCYKGFYT 1540

Query: 2257 LSEALDHARNFLGLNFHI 2310
            + EAL +AR  LG NF++
Sbjct: 1541 MEEALAYARERLGHNFYV 1558


>gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1098

 Score =  347 bits (890), Expect(4) = 1e-98
 Identities = 164/270 (60%), Positives = 214/270 (79%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
            I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 502  IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 561

Query: 313  EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
            E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 562  EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEE 621

Query: 493  SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
            SIEWT FTCP+GH+EWLVMP GLKNAP++ QRKM +IF  ++ FV+ YIDD+L FSK+  
Sbjct: 622  SIEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYK 681

Query: 673  EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
            +H  HL++   +   +G+I+ KKKM ++K+++ FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 682  DHIAHLELFFRKVEQNGLILSKKKMEIYKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDA 741

Query: 853  LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 742  MNDKKKLQQFLGLVNYARNHINNLAKLAGP 771



 Score = 35.8 bits (81), Expect(4) = 1e-98
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE+++ ++E + I+GE  ++YW+K+
Sbjct: 467 YRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKN 500



 Score = 25.4 bits (54), Expect(4) = 1e-98
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLG 1097
            L  L+LPL+  Y IIE+D    G
Sbjct: 802  LKPLELPLEESYFIIETDASQQG 824



 Score = 24.6 bits (52), Expect(4) = 1e-98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     Q+ FN EDIKLV+
Sbjct: 773  YAKLRKNGQKYFNSEDIKLVR 793



 Score = 83.2 bits (204), Expect = 8e-13
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 17/148 (11%)
 Frame = +1

Query: 1933 EKIRFGNQ-ELLVFPRGKMSFKEFSHITLSKEQKCILDNLWISFNKK--DQKYFLACMNS 2103
            E   FG+  +L +FP     FK   HI L + Q+CILDN W  +N K  ++ Y L+ +NS
Sbjct: 835  ECFTFGDDNKLRIFPPNSYKFKPKDHIILDEVQECILDNFWYQYNNKREEKGYLLSILNS 894

Query: 2104 LSEHF-------------HQTKTHFKFYVVFKGNLPGIWI-FHTWIEVLDSIKDFKNPLF 2241
            LSE+F             H+       YVVF G LPG++I F   +      K      +
Sbjct: 895  LSEYFHLINGSLMPANEDHEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGISW 954

Query: 2242 KGFNNLSEALDHARNFLGLNFHISPSLR 2325
            K + ++ EAL  AR  LG+N+++ P+ +
Sbjct: 955  KKYKDIDEALSQARKILGINYYLEPAAK 982


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
            gi|584388573|gb|AHI90954.1| polyprotein [Hibiscus
            bacilliform virus GD1]
          Length = 1892

 Score =  259 bits (662), Expect(4) = 4e-98
 Identities = 129/282 (45%), Positives = 187/282 (66%), Gaps = 9/282 (3%)
 Frame = +1

Query: 124  RLKIFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIV 300
            R K+ C LDI NP+  +    I +   Q  E F+ HI  LL+L +IR S S H+++AFIV
Sbjct: 1313 RNKVLCYLDIKNPDMVIEDKPIKHVTPQMEESFRKHIKGLLELKVIRPSTSKHRTTAFIV 1372

Query: 301  RKHSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLK 459
               + +        +G+ RMV NYKRLND T  D Y +P    ++ R+   KI+SKFDLK
Sbjct: 1373 NSGTSVDPVTGKETKGKERMVFNYKRLNDLTEKDQYSLPGINTIMKRVGHAKIYSKFDLK 1432

Query: 460  SGFWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYI 639
            SGF QV MHPESI+WT F  P+G +EWLVMPFGLKNAP++ QRKMD++F   + F+  YI
Sbjct: 1433 SGFHQVAMHPESIKWTAFWVPDGLYEWLVMPFGLKNAPAVFQRKMDNVFKGTEAFIAVYI 1492

Query: 640  DDILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPH 819
            DDIL FS+S  EH  H+++++ +   +G+++   KM + ++++EFLG I+  GRI+LQPH
Sbjct: 1493 DDILVFSQSEEEHIKHIRVMLEKCRENGLVLSPTKMKIAQRKVEFLGAILEAGRIQLQPH 1552

Query: 820  IAQMALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            I +  + F D+ L+  K ++ FLGL+NYAR++I  +G++  P
Sbjct: 1553 IIKKVVNFKDEDLQETKGLRSFLGLLNYARAYIPQMGRLLSP 1594



 Score =  126 bits (316), Expect(4) = 4e-98
 Identities = 61/144 (42%), Positives = 96/144 (66%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP+L+LP    ++I+E+DGC  GWG +   K  ++  KNTERIC YASGK+      S+I
Sbjct: 1625 LPDLELPPQECFIILETDGCMEGWGGVCKWKKKEYDPKNTERICAYASGKFHP--IKSTI 1682

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV  +L++F++  + K  +TIRT+C+AI+ F++   + + + SR RW+NF D   
Sbjct: 1683 DAEIHAVMNSLEAFKIHYLDKPSLTIRTDCQAIIAFFD--TISNHKPSRLRWINFTDYVT 1740

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ ++F+H+KG++N  AD LSR
Sbjct: 1741 GLGIPVNFQHVKGEDNRLADALSR 1764



 Score = 23.9 bits (50), Expect(4) = 4e-98
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK S K ++  N+ED KLV+
Sbjct: 1596 YAKVSPKGEKKLNKEDWKLVR 1616



 Score = 21.9 bits (45), Expect(4) = 4e-98
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +2

Query: 62   LISKIEKLGILGENILRYWDKD 127
            L+ +++  G +GEN +++W ++
Sbjct: 1293 LMKELKDQGYIGENPMKHWARN 1314


>gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 764

 Score =  345 bits (885), Expect(4) = 5e-98
 Identities = 164/270 (60%), Positives = 213/270 (78%)
 Frame = +1

Query: 133 IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
           I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 168 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 227

Query: 313 EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
           E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 228 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 287

Query: 493 SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
           SIEWT FTCP+GH+EWLVMP GLKNAP++ QRKM +IF  ++ FV+ YIDD+L FSK+  
Sbjct: 288 SIEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYK 347

Query: 673 EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
           +H  HL++   +   +G+I+ KKKM + K+++ FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 348 DHIAHLELFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDA 407

Query: 853 LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
           + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 408 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 437



 Score = 35.8 bits (81), Expect(4) = 5e-98
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
           Y  + S++DIE+++ ++E + I+GE  ++YW+K+
Sbjct: 133 YRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKN 166



 Score = 25.4 bits (54), Expect(4) = 5e-98
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLG 1097
            L  L+LPL+  Y IIE+D    G
Sbjct: 468  LKPLELPLEESYFIIETDASQQG 490



 Score = 24.6 bits (52), Expect(4) = 5e-98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AK     Q+ FN EDIKLV+
Sbjct: 439  YAKLRKNGQKYFNSEDIKLVR 459



 Score = 83.2 bits (204), Expect = 8e-13
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 17/148 (11%)
 Frame = +1

Query: 1933 EKIRFGNQ-ELLVFPRGKMSFKEFSHITLSKEQKCILDNLWISFNKK--DQKYFLACMNS 2103
            E   FG+  +L +FP     FK   HI L + Q+CILDN W  +N K  ++ Y L+ +NS
Sbjct: 501  ECFTFGDDNKLRIFPPNSYKFKPKDHIILDEVQECILDNFWYQYNNKREEKGYLLSILNS 560

Query: 2104 LSEHF-------------HQTKTHFKFYVVFKGNLPGIWI-FHTWIEVLDSIKDFKNPLF 2241
            LSE+F             H+       YVVF G LPG++I F   +      K      +
Sbjct: 561  LSEYFHLINGSLMPANEDHEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGISW 620

Query: 2242 KGFNNLSEALDHARNFLGLNFHISPSLR 2325
            K + ++ EAL  AR  LG+N+++ P+ +
Sbjct: 621  KKYKDIDEALSQARKILGINYYLEPAAK 648


>gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
            Japonica Group]
          Length = 2828

 Score =  345 bits (885), Expect(4) = 2e-97
 Identities = 164/270 (60%), Positives = 213/270 (78%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKHS 312
            I CK++IINPEY ++T+ I A  +D+E+FKMHI ELL+LG IR S SPH+S+AFIVR H+
Sbjct: 2232 IECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHA 2291

Query: 313  EIVRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGFWQVKMHPE 492
            E VRG+SRMVINYKRLNDNT  D Y+IP+K + INRIQ  K FSKFDLK+GFWQVKM  E
Sbjct: 2292 EEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEE 2351

Query: 493  SIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDILGFSKSR* 672
            SIEWT FTCP+GH+EWLVMP GLKNAP++ QRKM +IF  ++ FV+ YIDD+L FSK+  
Sbjct: 2352 SIEWTAFTCPQGHYEWLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYK 2411

Query: 673  EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQMALEFPDK 852
            +H  HL++   +   +G+I+ KKKM + K+++ FLG  IG+G+I LQ HIA+  L+FPD 
Sbjct: 2412 DHIAHLELFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDA 2471

Query: 853  LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            + + K++QQFLGLVNYAR+ I +L K+AGP
Sbjct: 2472 MNDKKKLQQFLGLVNYARNHINNLAKLAGP 2501



 Score = 35.8 bits (81), Expect(4) = 2e-97
 Identities = 12/34 (35%), Positives = 26/34 (76%)
 Frame = +2

Query: 26   YYTLMSEQDIEQLISKIEKLGILGENILRYWDKD 127
            Y  + S++DIE+++ ++E + I+GE  ++YW+K+
Sbjct: 2197 YRDIKSKKDIEKIVQRLEDIQIIGEIPMKYWEKN 2230



 Score = 25.4 bits (54), Expect(4) = 2e-97
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLG 1097
            L  L+LPL+  Y IIE+D    G
Sbjct: 2532 LKPLELPLEESYFIIETDASQQG 2554



 Score = 23.1 bits (48), Expect(4) = 2e-97
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            + K     Q+ FN EDIKLV+
Sbjct: 2503 YTKLRKNGQKYFNSEDIKLVR 2523



 Score = 83.2 bits (204), Expect = 8e-13
 Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 17/148 (11%)
 Frame = +1

Query: 1933 EKIRFGNQ-ELLVFPRGKMSFKEFSHITLSKEQKCILDNLWISFNKK--DQKYFLACMNS 2103
            E   FG+  +L +FP     FK   HI L + Q+CILDN W  +N K  ++ Y L+ +NS
Sbjct: 2565 ECFTFGDDNKLRIFPPNSYKFKPKDHIILDEVQECILDNFWYQYNNKREEKGYLLSILNS 2624

Query: 2104 LSEHF-------------HQTKTHFKFYVVFKGNLPGIWI-FHTWIEVLDSIKDFKNPLF 2241
            LSE+F             H+       YVVF G LPG++I F   +      K      +
Sbjct: 2625 LSEYFHLINGSLMPANEDHEVIQQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGISW 2684

Query: 2242 KGFNNLSEALDHARNFLGLNFHISPSLR 2325
            K + ++ EAL  AR  LG+N+++ P+ +
Sbjct: 2685 KKYKDIDEALSQARKILGINYYLEPAAK 2712


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  260 bits (665), Expect(3) = 5e-96
 Identities = 137/280 (48%), Positives = 183/280 (65%), Gaps = 9/280 (3%)
 Frame = +1

Query: 130  KIFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRK 306
            K+ C LDI NP+  +    + +   Q  E F+ H+  LL++G IR S S H+++A IV  
Sbjct: 1366 KVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNS 1425

Query: 307  HSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
             + I       V+G+ RMV NYKRLND T  D Y +P    ++ R++   IFSKFDLKSG
Sbjct: 1426 GTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSG 1485

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            F QV MHP+SIEWT F  P G +EWLVMPFGLKNAP++ QRKMD  F   + F+  YIDD
Sbjct: 1486 FHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDD 1545

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            IL FSKS  EH  HL+I++S    +G+I+   KM + + +IEFLG II +G IKLQPHI 
Sbjct: 1546 ILVFSKSEREHEEHLKIMLSICQKNGLILSPTKMKIAQVEIEFLGAIIHNGLIKLQPHIV 1605

Query: 826  QMALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            Q  L F +K LE +K ++ +LGL+NYARS+I  +G++  P
Sbjct: 1606 QKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSP 1645



 Score =  117 bits (294), Expect(3) = 5e-96
 Identities = 59/144 (40%), Positives = 94/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP L+LP    ++IIE+DGC  GWG +   K  ++  +++ER+C YASGK+      S+I
Sbjct: 1676 LPALELPPADCFIIIETDGCMDGWGGVCKWKLAQYDPRSSERVCAYASGKFNPP--KSTI 1733

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV  +L++F+++ + K  + +RT+C+AI++F+NK N++  + SR RW+ F D   
Sbjct: 1734 DAEIHAVMNSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVN--KPSRVRWIAFTDFLT 1791

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ ++ EHI GK N  AD LSR
Sbjct: 1792 GLGIPVNIEHIDGKNNHLADALSR 1815



 Score = 25.0 bits (53), Expect(3) = 5e-96
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 44   EQDIEQLISKIEKLGILGENILRYWDKD 127
            +Q    LI +++  G +GE  ++YW K+
Sbjct: 1338 QQKFAGLIQELKAQGYIGEEPMKYWAKN 1365


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  259 bits (663), Expect(3) = 5e-96
 Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 9/280 (3%)
 Frame = +1

Query: 130  KIFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRK 306
            ++ C LDI NP+  +    + +   Q  E F+ H+  LL++G IR S S H+++A IV  
Sbjct: 889  RVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRRHVEALLKIGAIRPSKSRHRTTAIIVNS 948

Query: 307  HSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
             + I       V+G+ RMV NYKRLND T  D Y +P    ++ R++   IFSKFDLKSG
Sbjct: 949  GTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSG 1008

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            F QV MHP+S+EWT F  P G +EWLVMPFGLKNAP++ QRKMD  F   + F+  YIDD
Sbjct: 1009 FQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDD 1068

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            IL FSK+  EH  HLQI++S    +G+I+   KM + + +IEFLG II +G IKLQPHI 
Sbjct: 1069 ILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQAEIEFLGAIIHNGLIKLQPHIV 1128

Query: 826  QMALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            Q  L F +K LE +K ++ +LGL+NYARS+I  +G++  P
Sbjct: 1129 QKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSP 1168



 Score =  118 bits (296), Expect(3) = 5e-96
 Identities = 60/144 (41%), Positives = 94/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP L+LP    ++IIE+DGC  GWG +   K  ++  +++ER+C YASGK+      S+I
Sbjct: 1199 LPALELPPADCFIIIETDGCMDGWGGVCKWKIAQYDPRSSERVCAYASGKFNPP--KSTI 1256

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV  +L+SF+++ + K  + +RT+C+AI++F+NK N++  + SR RW+ F D   
Sbjct: 1257 DAEIHAVMNSLNSFKIYYLDKPSLCLRTDCQAIISFFNKSNVN--KPSRVRWIAFTDFLT 1314

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ ++ EHI GK N  AD LSR
Sbjct: 1315 GLGIPVNIEHIDGKNNHLADALSR 1338



 Score = 25.0 bits (53), Expect(3) = 5e-96
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 44  EQDIEQLISKIEKLGILGENILRYWDKD 127
           +Q    LI +++  G +GE  ++YW K+
Sbjct: 861 QQKFAGLIQELKAQGYIGEEPMKYWAKN 888


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  259 bits (662), Expect(3) = 2e-95
 Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 9/280 (3%)
 Frame = +1

Query: 130  KIFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRK 306
            ++ C LDI NP+  +    + +   Q  E F+ H+  LL++G IR S S H+++A IV  
Sbjct: 1367 QVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNS 1426

Query: 307  HSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
             + I       V+G+ RMV NYKRLND T  D Y +P    ++ R++   IFSKFDLKSG
Sbjct: 1427 GTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSG 1486

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            F QV MHP+S+EWT F  P G +EWLVMPFGLKNAP++ QRKMD  F   + F+  YIDD
Sbjct: 1487 FHQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDD 1546

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            IL FSK+  EH  HLQI++S    +G+I+   KM + + +IEFLG II +G IKLQPHI 
Sbjct: 1547 ILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQAEIEFLGAIIHNGLIKLQPHIV 1606

Query: 826  QMALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            Q  L F +K LE +K ++ +LGL+NYARS+I  +G++  P
Sbjct: 1607 QKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSP 1646



 Score =  117 bits (294), Expect(3) = 2e-95
 Identities = 59/144 (40%), Positives = 94/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP L+LP    ++IIE+DGC  GWG +   K  ++  +++ER+C YASGK+      S+I
Sbjct: 1677 LPALELPPADCFIIIETDGCMDGWGGVCKWKIAQYDPRSSERVCAYASGKFNPP--KSTI 1734

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV  +L++F+++ + K  + +RT+C+AI++F+NK N++  + SR RW+ F D   
Sbjct: 1735 DAEIHAVMNSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVN--KPSRVRWIAFTDFLT 1792

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ ++ EHI GK N  AD LSR
Sbjct: 1793 GLGIPVNIEHIDGKNNHLADALSR 1816



 Score = 24.3 bits (51), Expect(3) = 2e-95
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 44   EQDIEQLISKIEKLGILGENILRYWDKD 127
            +Q    LI  ++  G +GE  ++YW K+
Sbjct: 1339 QQKFAGLIQDLKAQGYIGEEPMKYWAKN 1366


>emb|CAE81285.1| polyprotein [Cacao swollen shoot virus]
          Length = 1770

 Score =  249 bits (635), Expect(4) = 7e-95
 Identities = 131/280 (46%), Positives = 179/280 (63%), Gaps = 9/280 (3%)
 Frame = +1

Query: 130  KIFCKLDIINPEYKVRTAKINANNQDVE-DFKMHISELLQLGIIRRSDSPHKSSAFIVRK 306
            KI C+LDI NP+  +    I      +E  F+ H+  LL +G+IR S S H+++AFIV  
Sbjct: 1197 KILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRTTAFIVES 1256

Query: 307  HSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
             + I       + G+ RMV NYKRLNDNT  D Y +P    ++ R+   KIFSKFDLKSG
Sbjct: 1257 GTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKFDLKSG 1316

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            F QV M  ESI WT F  P+G +EWLVMPFGLKNAP++ QRKMD  F   + F+  YIDD
Sbjct: 1317 FHQVAMAKESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIAVYIDD 1376

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            IL FS++  EH  H+ I+++    +G+++   K+ L +++IEFLG II  G++KLQPHI 
Sbjct: 1377 ILVFSETMAEHTKHIGIMLTICQENGLVLSPNKICLAQREIEFLGTIISQGQMKLQPHII 1436

Query: 826  QMALEFPD-KLENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            +  +   D +LE  K ++ FLGL+NYAR +I +LGK   P
Sbjct: 1437 KKIVNKADMELETTKGLRSFLGLLNYARIYIPNLGKKLSP 1476



 Score =  122 bits (307), Expect(4) = 7e-95
 Identities = 67/145 (46%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNV-SS 1205
            LP L +P     +IIESDGC  GWGA+   K  K   + TE++C YASGK+   G + S+
Sbjct: 1507 LPNLAIPPARCCIIIESDGCMEGWGAVCKWKLAKEDSRTTEKVCAYASGKF---GIIKST 1563

Query: 1206 IDTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRC 1385
            ID E+ A+  AL+SF++F + K+ + +RT+C+AIVTFYNK +  + + SR RW+ F D  
Sbjct: 1564 IDAEIFALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTS--THKPSRIRWITFSDYI 1621

Query: 1386 IQKGLIIHFEHIKGKENIAADILSR 1460
               G+ +  EHI GKEN  AD LSR
Sbjct: 1622 TGLGVQVTIEHINGKENQLADTLSR 1646



 Score = 26.9 bits (58), Expect(4) = 7e-95
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 53   IEQLISKIEKLGILGENILRYWDKD 127
            ++QL+ +++  G +GEN +++W K+
Sbjct: 1172 LQQLMERLKDQGFIGENPMQHWAKN 1196



 Score = 21.9 bits (45), Expect(4) = 7e-95
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 941  HAKTSIKSQRNFNQEDIKLVQ 1003
            +AKTS   ++ FN++D  L++
Sbjct: 1478 YAKTSPTGEKKFNRQDWHLIK 1498


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score =  257 bits (656), Expect(3) = 7e-95
 Identities = 135/280 (48%), Positives = 182/280 (65%), Gaps = 9/280 (3%)
 Frame = +1

Query: 130  KIFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRK 306
            ++ C LDI NP+  +    + +   Q  E F+ H+  LL++G IR S S H+++A IV  
Sbjct: 1382 QVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNS 1441

Query: 307  HSEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSG 465
             + I       V+G+ RMV NYKRLND T  D Y +P    ++ R++   IFSKFDLKSG
Sbjct: 1442 GTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSG 1501

Query: 466  FWQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDD 645
            F QV MHP+SIEWT F  P G +EWLVMPFGLKNAP+I QRKMD  F   + F+  YIDD
Sbjct: 1502 FHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAIFQRKMDHCFKGTEAFIAVYIDD 1561

Query: 646  ILGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIA 825
            IL FSK+  +H  HLQI+++    +G+I+   KM + + +IEFLG II  G IKLQPHI 
Sbjct: 1562 ILVFSKTEQDHEKHLQIMLAICQKNGLILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIV 1621

Query: 826  QMALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
            Q  L F +K LE +K ++ +LGL+NYARS+I  +G++  P
Sbjct: 1622 QKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLLSP 1661



 Score =  118 bits (295), Expect(3) = 7e-95
 Identities = 59/144 (40%), Positives = 94/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP L+LP    ++IIE+DGC  GWG +   K  ++  +++ER+C YASGK+      S+I
Sbjct: 1692 LPALELPPADCFIIIETDGCMDGWGGVCKWKVAQYDPRSSERVCAYASGKFNPP--KSTI 1749

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV  +L++F+++ + K  + +RT+C+AI++F+NK N++  + SR RW+ F D   
Sbjct: 1750 DAEIHAVMNSLNNFKIYYLDKSSLCLRTDCQAIISFFNKSNVN--KPSRVRWIAFTDFLT 1807

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ ++ EHI GK N  AD LSR
Sbjct: 1808 GLGIPVNIEHIDGKNNHLADALSR 1831



 Score = 24.3 bits (51), Expect(3) = 7e-95
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 44   EQDIEQLISKIEKLGILGENILRYWDKD 127
            +Q    LI  ++  G +GE  ++YW K+
Sbjct: 1354 QQKFAGLIQDLKAQGYIGEEPMKYWAKN 1381


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1] gi|333493962|gb|AEF56561.1|
            polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  251 bits (642), Expect(3) = 9e-95
 Identities = 126/279 (45%), Positives = 184/279 (65%), Gaps = 9/279 (3%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKI-NANNQDVEDFKMHISELLQLGIIRRSDSPHKSSAFIVRKH 309
            I C+LDI NP++ +    + N   Q  E FK HI  LL LG+IR S S H+++A +V   
Sbjct: 1258 ILCQLDIKNPDFIIEDRPLKNLTPQMKESFKKHIKVLLDLGVIRASKSRHRTTAMLVNSG 1317

Query: 310  SEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGF 468
            + +       ++ + RMV NYKRLND T  D Y +P    ++ ++   KIFSKFDLKSGF
Sbjct: 1318 TTVDPKTGKEIKRKERMVFNYKRLNDITHKDQYSLPGINTILKKVGNSKIFSKFDLKSGF 1377

Query: 469  WQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDI 648
             QV MHP+SIEWT F  P+G +EWLVMPFGLKNAPS+ QRKMD+ F   + F+  YIDDI
Sbjct: 1378 HQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECFKGTEDFIAVYIDDI 1437

Query: 649  LGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQ 828
            L FS++  +H  HL+ ++     +G+++   KM +  Q++EFLG  IG+ RI+LQPH+ +
Sbjct: 1438 LVFSENEKDHAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIK 1497

Query: 829  MALEFPD-KLENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
              +EF + +L+  K ++ +LG++NYAR++I +LG++  P
Sbjct: 1498 KIVEFNEAELKEKKGMRSWLGILNYARAYIPNLGRLLSP 1536



 Score =  121 bits (304), Expect(3) = 9e-95
 Identities = 60/144 (41%), Positives = 94/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP+L+LP +  ++I+E+DGC  GWG I   KP +   +  E++C YASGK+      S+I
Sbjct: 1567 LPDLELPPEDCFIILETDGCMTGWGGICKWKPKRNDPRRMEKVCAYASGKFSP--IKSTI 1624

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
            D E+ AV   L+  +++ + K+E+ IRT+C+AI++F+NK  L+  + SR RW+ F D   
Sbjct: 1625 DAEIHAVMNTLEKLKIYYLDKKELIIRTDCQAIISFFNKSALN--KPSRVRWVAFTDFIT 1682

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ + FEHI G++N+ AD LSR
Sbjct: 1683 GIGINVEFEHIDGRDNVLADSLSR 1706



 Score = 25.8 bits (55), Expect(3) = 9e-95
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 62   LISKIEKLGILGENILRYWDKD 127
            L+ ++++ G +GEN L++W K+
Sbjct: 1235 LLEELKEAGFIGENPLQHWKKN 1256


>gb|AHB61260.1| polyprotein [Rubus yellow net virus]
          Length = 1971

 Score =  238 bits (608), Expect(3) = 1e-94
 Identities = 125/279 (44%), Positives = 177/279 (63%), Gaps = 9/279 (3%)
 Frame = +1

Query: 133  IFCKLDIINPEYKVRTAKINANNQDVE-DFKMHISELLQLGIIRRSDSPHKSSAFIVRKH 309
            I CKLDI NP+  + +   +A +++ +  ++ HI  LL++ +I+ S S H+++AFI    
Sbjct: 1379 IKCKLDIKNPDIVISSKPPDAVSKETKAQYQRHIDALLKIKVIQPSKSRHRTAAFITNSG 1438

Query: 310  SEI-------VRGESRMVINYKRLNDNTRNDGYDIPDKTQLINRIQECKIFSKFDLKSGF 468
            + +       +RG+ RMV +Y+ LNDNT  D Y +P    +I+ I   KIFSKFDLKSGF
Sbjct: 1439 TTVDPITKKEIRGKERMVFDYRSLNDNTHKDQYTLPGINTIISAIGNAKIFSKFDLKSGF 1498

Query: 469  WQVKMHPESIEWTTFTCPEGHFEWLVMPFGLKNAPSILQRKMDDIFLKHKRFVITYIDDI 648
             QV M  ESI WT F  P G +EW VMPFGL NAP++ QRKMD  F     F+  YIDDI
Sbjct: 1499 HQVLMDEESIPWTAFVTPVGFYEWKVMPFGLANAPAVFQRKMDQCFAGTSEFIAVYIDDI 1558

Query: 649  LGFSKSR*EHRGHLQIVISEFINHGIIIRKKKMVLFKQQIEFLGVIIGDGRIKLQPHIAQ 828
            L FSK+  EH  HL I++    ++G+++   KM L   +I+FLG  IGDG+IKLQPHI +
Sbjct: 1559 LVFSKTLKEHEKHLSIMLGICRDNGLVLSPSKMRLAATEIDFLGASIGDGKIKLQPHIIK 1618

Query: 829  MALEFPDK-LENLKQIQQFLGLVNYARSFIKDLGKIAGP 942
               E  D+ L+ LK ++ +LG++NYAR++I   G + GP
Sbjct: 1619 KIAEVDDESLKTLKGLRSWLGVLNYARNYIPKCGTLLGP 1657



 Score =  135 bits (341), Expect(3) = 1e-94
 Identities = 71/144 (49%), Positives = 95/144 (65%)
 Frame = +3

Query: 1029 LPELQLPLDTDYLIIESDGCDLGWGAILIAKPHKFTEKNTERICRYASGKYQEKGNVSSI 1208
            LP L+LP +  Y+IIE+DGC  GWG +   KP+K      E IC YASGK+      S+I
Sbjct: 1688 LPGLKLPSEEAYMIIETDGCMEGWGGVCKWKPNKADSAGKEEICAYASGKFPTV--KSTI 1745

Query: 1209 DTELLAVSYALDSFELFIISKEEITIRTNCEAIVTFYNKMNLDSKRSSRRRWLNFIDRCI 1388
              E+ AV  +L+ F++F ++K+EITIRT+C AI+TFY K+N  +K+ SR RWL F D   
Sbjct: 1746 GAEIFAVMESLEKFKIFYMNKDEITIRTDCHAIITFYEKLN--AKKPSRVRWLAFCDYIT 1803

Query: 1389 QKGLIIHFEHIKGKENIAADILSR 1460
              G+ + FEHIKGK+N  AD LSR
Sbjct: 1804 NSGVKMKFEHIKGKDNQLADNLSR 1827



 Score = 24.3 bits (51), Expect(3) = 1e-94
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +2

Query: 11   DIEVLYYTL-MSEQDIEQL-----ISKIEKLGILGENILRYWDKD 127
            +IE +YY    SE+ + +L     + ++++ G +GE  +++W K+
Sbjct: 1333 EIERMYYANDYSEEGVSRLRNHKLLQELKEQGYIGEEPMKHWAKN 1377