BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Paeonia23_contig00012016
         (893 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   284   4e-74
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   273   7e-71
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              272   1e-70
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   272   1e-70
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   272   1e-70
ref|XP_007014568.1| Pseudouridine synthase isoform 2 [Theobroma ...   270   7e-70
ref|XP_007222727.1| hypothetical protein PRUPE_ppa006478mg [Prun...   265   2e-68
ref|XP_007014569.1| Pseudouridine synthase isoform 3 [Theobroma ...   263   7e-68
ref|XP_007014567.1| Pseudouridine synthase isoform 1 [Theobroma ...   263   7e-68
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        259   1e-66
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   259   1e-66
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   259   1e-66
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   257   4e-66
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   257   4e-66
ref|XP_007160215.1| hypothetical protein PHAVU_002G302500g [Phas...   249   1e-63
ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mi...   249   1e-63
ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-lik...   246   7e-63
ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [A...   241   2e-61
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   239   8e-61
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   238   2e-60

>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  284 bits (726), Expect = 4e-74
 Identities = 148/251 (58%), Positives = 176/251 (70%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ DVK QDIED+IN AAPG LRV+SV++VSR FHPNFSAKWRHYFYIFP NDG++GEQ
Sbjct: 185 TWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ 244

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            SE+E+D++     + +  + +  P  Y+                 S  KP +FS+ RV+
Sbjct: 245 ISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVD 304

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLRQLEGKLLSYK+FARDTKASRN GPPTECF++HARA EARL  S  D GEG KVMC+
Sbjct: 305 QLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFS--DDGEGTKVMCI 362

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL+DVG+
Sbjct: 363 ELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGF 422

Query: 171 AEFDSKNCLIR 139
            EFD + C IR
Sbjct: 423 TEFDPQICFIR 433


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 443

 Score =  273 bits (698), Expect = 7e-71
 Identities = 149/255 (58%), Positives = 176/255 (69%), Gaps = 5/255 (1%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DV+  +IED+IN++APG +RV+SV++VSR FHPNFSAKWR Y YIFP NDGE+ EQ
Sbjct: 197 TWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQ 256

Query: 711 RSESELDVESTGMAKIHDMERNG-----SPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFS 547
             +SE D+E+    + +D +RNG     S +H +                    KPR FS
Sbjct: 257 SFDSE-DLENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDELEGAK------KPRIFS 309

Query: 546 VLRVNKLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGR 367
           + RVN+LL+QLEGKLLSYK+FARDTKASRN GPPTECFIYHARA EARLP    D GEGR
Sbjct: 310 ICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLP--CPDHGEGR 367

Query: 366 KVMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCL 187
           KVMCVELV NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL
Sbjct: 368 KVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCL 427

Query: 186 VDVGYAEFDSKNCLI 142
            DVGY EFD++ C++
Sbjct: 428 FDVGYTEFDAQICIV 442


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  272 bits (696), Expect = 1e-70
 Identities = 147/251 (58%), Positives = 171/251 (68%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ DVK QDIED+IN AAPG LRV+SV++VSR FHPNFSAKWRHYFYIFP NDG++GEQ
Sbjct: 185 TWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQ 244

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            SE+E+D++            N + K                       KP +FS+ RV+
Sbjct: 245 ISENEMDIQKISF--------NENRK-----------------------KPSTFSISRVD 273

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLRQLEGKLLSYK+FARDTKASRN GPPTECF++HARA EARL  S  D GEG KVMC+
Sbjct: 274 QLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFS--DDGEGTKVMCI 331

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCL+DVG+
Sbjct: 332 ELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGF 391

Query: 171 AEFDSKNCLIR 139
            EFD + C IR
Sbjct: 392 TEFDPQICFIR 402


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  272 bits (695), Expect = 1e-70
 Identities = 146/250 (58%), Positives = 170/250 (68%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  +IED+IN+AAPG +RV+SV+QVSR FHPNFSAKWR Y YIFP NDGE+ EQ
Sbjct: 210 TWRKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQ 269

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             +SE++VE+   +     + NG  ++ +                    KPR+F++ RVN
Sbjct: 270 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE------KPRNFTICRVN 323

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
            LL++LEGKLLSYK FARDTKASRN GPPTECFIYHARA EA LP  V D GEGRKVMCV
Sbjct: 324 LLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCV 383

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT +R         ALLKL+D            PEGLCLVDVGY
Sbjct: 384 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGY 443

Query: 171 AEFDSKNCLI 142
             FD +N LI
Sbjct: 444 TNFDPQNSLI 453


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
           gi|557556408|gb|ESR66422.1| hypothetical protein
           CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  272 bits (695), Expect = 1e-70
 Identities = 146/250 (58%), Positives = 170/250 (68%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  +IED+IN+AAPG +RV+SV+QVSR FHPNFSAKWR Y YIFP NDGE+ EQ
Sbjct: 203 TWRKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEKREQ 262

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             +SE++VE+   +     + NG  ++ +                    KPR+F++ RVN
Sbjct: 263 SIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE------KPRNFTICRVN 316

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
            LL++LEGKLLSYK FARDTKASRN GPPTECFIYHARA EA LP  V D GEGRKVMCV
Sbjct: 317 LLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCV 376

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT +R         ALLKL+D            PEGLCLVDVGY
Sbjct: 377 ELVANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGY 436

Query: 171 AEFDSKNCLI 142
             FD +N LI
Sbjct: 437 TNFDPQNSLI 446


>ref|XP_007014568.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
           gi|508784931|gb|EOY32187.1| Pseudouridine synthase
           isoform 2 [Theobroma cacao]
          Length = 446

 Score =  270 bits (689), Expect = 7e-70
 Identities = 147/250 (58%), Positives = 173/250 (69%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  DIED+IN+ APG LRV+SV++VSR FHPNFSAKWRHY YIFP ++ E  +Q
Sbjct: 197 TWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQ 256

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             E++ +VE+      ++ +RNG  ++                   +  KP  FSV RVN
Sbjct: 257 SCENKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAAN-KPTRFSVCRVN 315

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL+QLE KLLSYKMFARDTKASRN GPPTECF+YHARAAEAR+P SV D GEGR+VMCV
Sbjct: 316 QLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMCV 375

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLM             P+GLCLVDVGY
Sbjct: 376 ELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGY 435

Query: 171 AEFDSKNCLI 142
            EFD +NCL+
Sbjct: 436 TEFDPQNCLL 445


>ref|XP_007222727.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
           gi|462419663|gb|EMJ23926.1| hypothetical protein
           PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  265 bits (676), Expect = 2e-68
 Identities = 141/250 (56%), Positives = 174/250 (69%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK+QDI D+IN+AAPG LRV+SVT+VSR FHPNF+AKWRHY YIFP ND E+ EQ
Sbjct: 162 TWRKDVKSQDITDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDMEQ 221

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            ++S  + ++    + +   +NG  +  +                   +KPR F+V RVN
Sbjct: 222 SNQSGENAQNFKSLENYHEHKNGCDQCNEANVGNLVINDNEDLET---LKPREFTVSRVN 278

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL++LEGKLLSYKMFARDTK SRNEGPPTECF+YHARA E++LP S  +  +GR+VMC+
Sbjct: 279 QLLQKLEGKLLSYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCS--EHEKGRRVMCI 336

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLR+MVRVLVATSIR         ALLKLMD            P+GLCLVDVGY
Sbjct: 337 ELVANRFLRRMVRVLVATSIREAAAGADEDALLKLMDATCRRATAPPAPPDGLCLVDVGY 396

Query: 171 AEFDSKNCLI 142
            EFD ++CLI
Sbjct: 397 EEFDPQDCLI 406


>ref|XP_007014569.1| Pseudouridine synthase isoform 3 [Theobroma cacao]
           gi|508784932|gb|EOY32188.1| Pseudouridine synthase
           isoform 3 [Theobroma cacao]
          Length = 303

 Score =  263 bits (672), Expect = 7e-68
 Identities = 146/250 (58%), Positives = 172/250 (68%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  DIED+IN+ APG LRV+SV++VSR FHPNFSAKWRHY YIFP ++ E  +Q
Sbjct: 56  TWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQ 115

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             E++ +VE+      ++ +RNG  ++                   +  KP  FSV RVN
Sbjct: 116 SCENKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAAN-KPTRFSVCRVN 174

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL+QLE KLLSYKMFARDTKASRN GPPTECF+YHARAAEAR+P S  D GEGR+VMCV
Sbjct: 175 QLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCS--DHGEGREVMCV 232

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLM             P+GLCLVDVGY
Sbjct: 233 ELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGY 292

Query: 171 AEFDSKNCLI 142
            EFD +NCL+
Sbjct: 293 TEFDPQNCLL 302


>ref|XP_007014567.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
           gi|508784930|gb|EOY32186.1| Pseudouridine synthase
           isoform 1 [Theobroma cacao]
          Length = 444

 Score =  263 bits (672), Expect = 7e-68
 Identities = 146/250 (58%), Positives = 172/250 (68%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  DIED+IN+ APG LRV+SV++VSR FHPNFSAKWRHY YIFP ++ E  +Q
Sbjct: 197 TWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQ 256

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             E++ +VE+      ++ +RNG  ++                   +  KP  FSV RVN
Sbjct: 257 SCENKKEVENFISDGNYNEQRNGYLENIRWENVENLIISDNMGLEAAN-KPTRFSVCRVN 315

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL+QLE KLLSYKMFARDTKASRN GPPTECF+YHARAAEAR+P S  D GEGR+VMCV
Sbjct: 316 QLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCS--DHGEGREVMCV 373

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLM             P+GLCLVDVGY
Sbjct: 374 ELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGY 433

Query: 171 AEFDSKNCLI 142
            EFD +NCL+
Sbjct: 434 TEFDPQNCLL 443


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  259 bits (661), Expect = 1e-66
 Identities = 146/250 (58%), Positives = 169/250 (67%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR D+  QDIE++IN AA G L+  SV++VSR FHPNFSAKWR Y YIFP ND E+ EQ
Sbjct: 204 TWRKDITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEEDEEQ 263

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            +++  ++E+      ++   +G  +  D                  G KP SFSV RV+
Sbjct: 264 SNKNGENLET------YEKIESGCGEWNDESFGNLIIDDSEELES--GKKPSSFSVSRVD 315

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLR LEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLP+S  D  EGRK+MCV
Sbjct: 316 QLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTS--DCTEGRKIMCV 373

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         ALLKLMD            P+GLCLVDVGY
Sbjct: 374 ELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGLCLVDVGY 433

Query: 171 AEFDSKNCLI 142
           +EF   NCLI
Sbjct: 434 SEFKPNNCLI 443


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  259 bits (661), Expect = 1e-66
 Identities = 145/250 (58%), Positives = 165/250 (66%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK QDIEDSIN+AAPG LR  SV+QVSR FHPNFSAKWR Y YI P NDGE  E 
Sbjct: 195 TWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP 254

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            S +  +VE+        +E +   K  D                 +  KP++FS+ RVN
Sbjct: 255 DSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEELVSAD-KPQTFSITRVN 313

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLR+LEGKLLSYKMFARDTKASRNEGPPTECF+YHARAAE RLP    + G GR VMCV
Sbjct: 314 QLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLP--CLEQGVGRSVMCV 371

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT+IR         ALL+LMD            P+GL LVDVGY
Sbjct: 372 ELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGY 431

Query: 171 AEFDSKNCLI 142
            +FDS+ C I
Sbjct: 432 TDFDSQICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  259 bits (661), Expect = 1e-66
 Identities = 145/250 (58%), Positives = 165/250 (66%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK QDIEDSIN+AAPG LR  SV+QVSR FHPNFSAKWR Y YI P NDGE  E 
Sbjct: 195 TWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENMEP 254

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            S +  +VE+        +E +   K  D                 +  KP++FS+ RVN
Sbjct: 255 DSTTWENVENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSAD-KPQTFSITRVN 313

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLR+LEGKLLSYKMFARDTKASRNEGPPTECF+YHARAAE RLP    + G GR VMCV
Sbjct: 314 QLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLP--CLEQGVGRSVMCV 371

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT+IR         ALL+LMD            P+GL LVDVGY
Sbjct: 372 ELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGY 431

Query: 171 AEFDSKNCLI 142
            +FDS+ C I
Sbjct: 432 TDFDSQICFI 441


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
           gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 457

 Score =  257 bits (657), Expect = 4e-66
 Identities = 143/250 (57%), Positives = 165/250 (66%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  +IED+IN  APG +RV S+++VSR FHPNFSAKWR Y YIFP NDGE  E+
Sbjct: 211 TWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREE 270

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             E E  +E+    +  + +RN   +                       KPRSFSV RVN
Sbjct: 271 -IEGEGGIENFSSHENCEKQRNECGE-LASEENVENSIISDEDELQGAKKPRSFSVCRVN 328

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL+QLEGKLLSYKMFARDTKASRN GPPTECF+YHARA E RLPS   D  +G +VMCV
Sbjct: 329 QLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVMCV 386

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           EL+ NRFLRKMVRVLVATS+R         ALLKLMD            P+GLCLVDVGY
Sbjct: 387 ELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGY 446

Query: 171 AEFDSKNCLI 142
            EFD +NCLI
Sbjct: 447 TEFDPRNCLI 456


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
           gi|550318755|gb|ERP50021.1| hypothetical protein
           POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  257 bits (657), Expect = 4e-66
 Identities = 143/250 (57%), Positives = 165/250 (66%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVK  +IED+IN  APG +RV S+++VSR FHPNFSAKWR Y YIFP NDGE  E+
Sbjct: 202 TWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREE 261

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
             E E  +E+    +  + +RN   +                       KPRSFSV RVN
Sbjct: 262 -IEGEGGIENFSSHENCEKQRNECGE-LASEENVENSIISDEDELQGAKKPRSFSVCRVN 319

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL+QLEGKLLSYKMFARDTKASRN GPPTECF+YHARA E RLPS   D  +G +VMCV
Sbjct: 320 QLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVMCV 377

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           EL+ NRFLRKMVRVLVATS+R         ALLKLMD            P+GLCLVDVGY
Sbjct: 378 ELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGY 437

Query: 171 AEFDSKNCLI 142
            EFD +NCLI
Sbjct: 438 TEFDPRNCLI 447


>ref|XP_007160215.1| hypothetical protein PHAVU_002G302500g [Phaseolus vulgaris]
           gi|561033630|gb|ESW32209.1| hypothetical protein
           PHAVU_002G302500g [Phaseolus vulgaris]
          Length = 440

 Score =  249 bits (636), Expect = 1e-63
 Identities = 139/250 (55%), Positives = 164/250 (65%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ DVK +DIED+IN AA G LRV+SV++VSR FHPNFSAKWRHY YIFP  +G     
Sbjct: 211 TWKKDVKPRDIEDAINQAALGKLRVISVSEVSRVFHPNFSAKWRHYLYIFPLTNG----Y 266

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
           R +S  + ES  ++K ++M  + S    +                    K   FSV +VN
Sbjct: 267 RDQSNSNGESCDISKYNEMHDSSSKDGIENQE-----------------KSYLFSVSKVN 309

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
            LLR+LEGKLLSYKMFARDTKASRN+GPPTECF+YHARA E +LP++  D GE  KVMCV
Sbjct: 310 VLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPTT--DCGEETKVMCV 367

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         AL+KLMD            P+GLCLVDVGY
Sbjct: 368 ELVANRFLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGY 427

Query: 171 AEFDSKNCLI 142
            EFD + C I
Sbjct: 428 TEFDPQKCFI 437


>ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
           isoform X1 [Glycine max]
          Length = 444

 Score =  249 bits (635), Expect = 1e-63
 Identities = 136/250 (54%), Positives = 164/250 (65%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ DVK +DIED+IN AAPG LRV+SV++VSR FHPNFSAKWR Y YIFP  +G   +Q
Sbjct: 214 TWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGYTDQ 273

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
            S++    +S    +IHD       ++                      K  +FS+ +VN
Sbjct: 274 SSDNGEFYDSFKYNEIHDSASKDELENEK--------------------KSYAFSISKVN 313

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LLR+LEGKLLSYKMFARDTKASRN+GPPTECF+YHARA E +LP++  D GE  KVMCV
Sbjct: 314 RLLRKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEVKLPAT--DHGEETKVMCV 371

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR         AL+KLMD            P+GLCLVDVGY
Sbjct: 372 ELVANRFLRKMVRVLVATSIREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGY 431

Query: 171 AEFDSKNCLI 142
            EF+ + C I
Sbjct: 432 TEFEPQKCFI 441


>ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca
           subsp. vesca]
          Length = 410

 Score =  246 bits (629), Expect = 7e-63
 Identities = 136/254 (53%), Positives = 165/254 (64%), Gaps = 4/254 (1%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW  DV+ QDI D+I+ AAPG LR +SVT+VSR FHPNFSAKWR Y YIFP ND EE  +
Sbjct: 161 TWSKDVRCQDIADAIDNAAPGKLRTVSVTEVSRVFHPNFSAKWRRYLYIFPFNDDEEDRE 220

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGV----KPRSFSV 544
           +S      ++   A+I  ++ N                         G+    KP+ FSV
Sbjct: 221 QSN-----DTGENAQILKIKENHHEHEVVSDNCSEANVGNTNITDDVGLEAEKKPQMFSV 275

Query: 543 LRVNKLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRK 364
            RVNKLL++LEGKLLSYKMFARDTKASRNEGPPTECF++HARA E RLP S  +  +GR+
Sbjct: 276 SRVNKLLQKLEGKLLSYKMFARDTKASRNEGPPTECFVFHARAREYRLPCS--EHEKGRR 333

Query: 363 VMCVELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLV 184
           +MC+EL+ NRFLR+M+RVLVATSIR         AL+KLMD            P+GLCLV
Sbjct: 334 IMCIELIANRFLRRMIRVLVATSIREAAAGADEDALIKLMDATCRRATAPPAPPDGLCLV 393

Query: 183 DVGYAEFDSKNCLI 142
           DVGY EFD  +CLI
Sbjct: 394 DVGYEEFDPLDCLI 407


>ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [Amborella trichopoda]
           gi|548854646|gb|ERN12556.1| hypothetical protein
           AMTR_s00025p00208060 [Amborella trichopoda]
          Length = 371

 Score =  241 bits (616), Expect = 2e-61
 Identities = 134/251 (53%), Positives = 154/251 (61%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TWR DVKTQ+IE +IN  APG LR + V++VSR FHPNFSAKWRHY YIFP    EE   
Sbjct: 128 TWRTDVKTQEIEHAINTVAPGQLRAVYVSEVSRAFHPNFSAKWRHYLYIFPLKVEEES-- 185

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
                L +E+ G   I     +   K +                     KP  FSV +V+
Sbjct: 186 -----LGLENIGGGFIQCNNHDEERKEWVENGLENGCSIMVDEDYLERSKPMRFSVSKVD 240

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           ++LRQLEG+LLSYKMFARDTK+SRNEGPPTECF+YHARAAE RLP   +  G G  VMCV
Sbjct: 241 RILRQLEGRLLSYKMFARDTKSSRNEGPPTECFLYHARAAETRLPCPDEVDGNGLGVMCV 300

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVATSIR          LL+LMD            P+GLCLVDVGY
Sbjct: 301 ELVANRFLRKMVRVLVATSIREAAAGAGDDVLLRLMDATCRRATAPPAPPDGLCLVDVGY 360

Query: 171 AEFDSKNCLIR 139
            +F   N  IR
Sbjct: 361 EDFKPGNTFIR 371


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  239 bits (611), Expect = 8e-61
 Identities = 133/250 (53%), Positives = 161/250 (64%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ D+  +DIED+IN  APG LRV+SV +VSR FHPNFSAKWR Y YIFP  D  + +Q
Sbjct: 193 TWKKDINPRDIEDAINDGAPGKLRVISVHEVSRAFHPNFSAKWRRYLYIFPLTDEGDKDQ 252

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
              +E   +     ++ D       ++                     +K   FSV +VN
Sbjct: 253 SGSNEESCDRFIYNEVCDSVSKDELENE--------------------MKSYVFSVRKVN 292

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL++LEGKLLSYKMFARDTKASRN+GPPTECF+YHARA EARLP++  D+GE R VMC+
Sbjct: 293 RLLQKLEGKLLSYKMFARDTKASRNDGPPTECFVYHARAMEARLPTT--DNGEAR-VMCI 349

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT+IR         ALL+LMD            P+GLCLVDVGY
Sbjct: 350 ELVANRFLRKMVRVLVATTIREAAAGAEDDALLRLMDATCRRATAPPAPPDGLCLVDVGY 409

Query: 171 AEFDSKNCLI 142
           AEFD K C I
Sbjct: 410 AEFDQKKCFI 419


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
           gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase
           A [Medicago truncatula]
          Length = 400

 Score =  238 bits (608), Expect = 2e-60
 Identities = 129/250 (51%), Positives = 163/250 (65%)
 Frame = -3

Query: 891 TWRNDVKTQDIEDSINAAAPGMLRVLSVTQVSRTFHPNFSAKWRHYFYIFPSNDGEEGEQ 712
           TW+ D+K ++IED+IN AAPG LRV+SV +VSR FHPNFSAKWR Y YIFP  DG++ +Q
Sbjct: 170 TWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQ 229

Query: 711 RSESELDVESTGMAKIHDMERNGSPKHYDXXXXXXXXXXXXXXXXXSGVKPRSFSVLRVN 532
              +    +S    +I D +     +  +                    K   F V +VN
Sbjct: 230 SGGNGESCDSFIYNEICDSDSKDELEKEN--------------------KSYVFGVRKVN 269

Query: 531 KLLRQLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPSSVKDSGEGRKVMCV 352
           +LL++LEGK+LSYKMFARDTKASRN+GPPTECF++HARA EA+LP  + ++GE  +VMC+
Sbjct: 270 RLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLP--ITENGEETRVMCI 327

Query: 351 ELVGNRFLRKMVRVLVATSIRXXXXXXXXXALLKLMDXXXXXXXXXXXXPEGLCLVDVGY 172
           ELV NRFLRKMVRVLVAT+IR         ALLKLMD            P+GLCLVDVGY
Sbjct: 328 ELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLCLVDVGY 387

Query: 171 AEFDSKNCLI 142
           AEF+ + C I
Sbjct: 388 AEFEREKCFI 397