BLASTX nr result
ID: Paeonia23_contig00006358
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Paeonia23_contig00006358
(6363 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subun... 679 0.0
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatu... 664 0.0
ref|XP_003605603.1| 30S ribosomal protein S11 [Medicago truncatu... 581 e-162
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa... 484 e-133
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops... 481 e-132
ref|YP_008963723.1| RNA polymerase alpha subunit (chloroplast) [... 474 e-130
gb|ADD31228.1| RNA polymerase alpha subunit protein [Gunnera man... 473 e-130
ref|YP_008963511.1| RNA polymerase alpha subunit (chloroplast) [... 472 e-130
gb|ADD31234.1| RNA polymerase alpha subunit protein [Staphylea c... 472 e-129
gb|ADD31230.1| RNA polymerase alpha subunit protein [Liquidambar... 471 e-129
ref|YP_004021348.1| RNA polymerase alpha subunit [Theobroma caca... 469 e-129
ref|YP_008577440.1| RNA polymerase alpha subunit (chloroplast) [... 468 e-128
gb|ADM14340.1| RNA polymerase alpha subunit [Punica granatum] 468 e-128
gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta] 468 e-128
gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia inv... 467 e-128
gb|ADH94376.1| RNA polymerase alpha subunit [Syzygium cumini] 467 e-128
ref|YP_008965524.1| RNA polymerase alpha subunit [Pyrus spinosa]... 467 e-128
gb|ADM14339.1| RNA polymerase alpha subunit [Punica granatum] 467 e-128
ref|YP_008577525.1| RNA polymerase alpha subunit (chloroplast) [... 466 e-128
gb|AEX58487.1| RNA polymerase alpha subunit (chloroplast) [Theob... 466 e-128
>ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Cucumis
sativus]
Length = 466
Score = 679 bits (1753), Expect = 0.0
Identities = 344/432 (79%), Positives = 374/432 (86%), Gaps = 2/432 (0%)
Frame = +3
Query: 5070 MAKPIPKMGSRRNGRISSRKSARRIPKGVIHVQASFNNTMVTVTDVRGRVVSWSSAGTCG 5249
MAKPIP++GSRRNGRISSRKS RRIPKGVIHVQASFNNT+VTVTDVRGRV+SWSSAGTCG
Sbjct: 1 MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 5250 FKGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 5429
FKGTRRGTPFAAQTAAGNAIR V+DQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
Query: 5430 DVTPMPHNGCRPPKKRRV*KSMEEISREINDSTI*SNNITMVREKVTVSTRTLQWKCVES 5609
DVTPMPHNGCRPPKKR +K+ VSTRTL+WKCVES
Sbjct: 121 DVTPMPHNGCRPPKKR---------------------------QKIRVSTRTLKWKCVES 153
Query: 5610 RTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGI 5789
R DSKRLYYGRFILSPL KGQ DTIG+AMR+ALLGEIEGTCITRAK EKIPHEYSTIVGI
Sbjct: 154 RADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGI 213
Query: 5790 QESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQDIASPPSVEIVDNTQHIASLK 5969
QESVHEILMNLKE+VLRSNLYG R+ASICV+GPG VTAQDI PPSVEIVDNTQHIA+L
Sbjct: 214 QESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLM 273
Query: 5970 EPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVRNTNYSIHYYGNGNEKQEILF 6149
EPINLCI L+IERNRGY I+TPN+F+D SYP+DA+FMPVRN N+SIH Y NGNEKQEILF
Sbjct: 274 EPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILF 333
Query: 6150 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--GSFHFEDNQHKASFLPLPIFAFHD 6323
LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE +FH ++N+ K + LP+F FH+
Sbjct: 334 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKKKVT---LPLFTFHE 390
Query: 6324 RLDKLTKNKKEM 6359
+L KL K KKE+
Sbjct: 391 KLAKLRKKKKEI 402
>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
gi|355507111|gb|AES88253.1| 30S ribosomal protein S11
[Medicago truncatula]
Length = 466
Score = 664 bits (1712), Expect = 0.0
Identities = 339/432 (78%), Positives = 368/432 (85%), Gaps = 2/432 (0%)
Frame = +3
Query: 5070 MAKPIPKMGSRRNGRISSRKSARRIPKGVIHVQASFNNTMVTVTDVRGRVVSWSSAGTCG 5249
MAK IPK+GSR+NGRI SRK R+IPKGVI+VQASFNNT+VTVTDVRGRV+SWSSAG+CG
Sbjct: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
Query: 5250 FKGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 5429
FKGTRRGTPFAAQTAA NAIRTV+DQGMQRA V+IKGPGLGRDAALRAI RSGILL FIR
Sbjct: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
Query: 5430 DVTPMPHNGCRPPKKRRV*KSMEEISREINDSTI*SNNITMVREKVTVSTRTLQWKCVES 5609
DVTP+PHNGCR PKKR +KV VS RTLQWKCVES
Sbjct: 121 DVTPIPHNGCRAPKKR---------------------------QKVKVSARTLQWKCVES 153
Query: 5610 RTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGI 5789
R DSKRLYYGRFILSPL+KGQADTIG+AMRR LLGEIEGTCITRAK EKIPHEYSTIVGI
Sbjct: 154 RVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIVGI 213
Query: 5790 QESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQDIASPPSVEIVDNTQHIASLK 5969
QES+HEILMNLKE+VL+SNLYG R+ASIC +GPGYVTAQDI PPSVEIVDNTQHIA+L
Sbjct: 214 QESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLT 273
Query: 5970 EPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVRNTNYSIHYYGNGNEKQEILF 6149
EPINLCI LQIER RGYRIKT N+ +DGSY IDAVFMPVRN N+SIH Y NGNEKQEILF
Sbjct: 274 EPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILF 333
Query: 6150 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFEDNQHKASFLPLPIFAFHDRL 6329
LEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE + +FE+NQHK + LP+F FHDRL
Sbjct: 334 LEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENNQHKVT---LPLFTFHDRL 390
Query: 6330 --DKLTKNKKEM 6359
DKL KNKKE+
Sbjct: 391 LKDKLRKNKKEI 402
>ref|XP_003605603.1| 30S ribosomal protein S11 [Medicago truncatula]
gi|355506658|gb|AES87800.1| 30S ribosomal protein S11
[Medicago truncatula]
Length = 430
Score = 581 bits (1497), Expect = e-162
Identities = 306/432 (70%), Positives = 334/432 (77%), Gaps = 2/432 (0%)
Frame = +3
Query: 5070 MAKPIPKMGSRRNGRISSRKSARRIPKGVIHVQASFNNTMVTVTDVRGRVVSWSSAGTCG 5249
MAK IPK+GSR+NGRI SRK R+IPKGVI+VQASFNNT+VTVTDVRGRV+SWSSAG+CG
Sbjct: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
Query: 5250 FKGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 5429
FKGTRRGTPFAAQTAA NAIRTV+DQGMQRA V+IKGPGLGRDAALRAI RSGILL FIR
Sbjct: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
Query: 5430 DVTPMPHNGCRPPKKRRV*KSMEEISREINDSTI*SNNITMVREKVTVSTRTLQWKCVES 5609
DVTP+PHNGCR PKKRR KCVES
Sbjct: 121 DVTPIPHNGCRAPKKRR--------------------------------------KCVES 142
Query: 5610 RTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGTCITRAKFEKIPHEYSTIVGI 5789
R DSKRLYYGRFILSPL+KGQADTIG+AMRR LLGEIEGTCITRAK EKIPHEYSTIVGI
Sbjct: 143 RVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIVGI 202
Query: 5790 QESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQDIASPPSVEIVDNTQHIASLK 5969
QES+HEILMNLKE+VL+SNLYG R+ASIC +GPGYVTAQDI PPSVEIVDNTQHIA+L
Sbjct: 203 QESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLT 262
Query: 5970 EPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVRNTNYSIHYYGNGNEKQEILF 6149
EPINLCI LQIER RGYRIKT N+ +DGSY IDAVFMPVRN N+SIH Y NGNEKQEILF
Sbjct: 263 EPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILF 322
Query: 6150 LEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFEDNQHKASFLPLPIFAFHDRL 6329
LEIWTNG +E + +FE+NQHK + LP+F FHDRL
Sbjct: 323 LEIWTNG-------------------------KEENLNFENNQHKVT---LPLFTFHDRL 354
Query: 6330 --DKLTKNKKEM 6359
DKL KNKKE+
Sbjct: 355 LKDKLRKNKKEI 366
>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
Length = 337
Score = 484 bits (1245), Expect = e-133
Identities = 240/270 (88%), Positives = 251/270 (92%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTL+WKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYG RNASICV GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EPI+LCIGLQIE+NRGYRIKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQHK + LP+F FHDRL KL KNKKE+
Sbjct: 241 DNQHKVT---LPLFTFHDRLAKLRKNKKEI 267
>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
Length = 337
Score = 481 bits (1239), Expect = e-132
Identities = 240/270 (88%), Positives = 251/270 (92%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG +ASICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EPI+LCIGLQIERNRGYRIKT N+F+DGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQHKA+F P+F FHDRL KL KNKKE+
Sbjct: 241 DNQHKATF---PLFTFHDRLAKLRKNKKEI 267
>ref|YP_008963723.1| RNA polymerase alpha subunit (chloroplast) [Liquidambar formosana]
gi|491650402|gb|AGL13462.1| RNA polymerase alpha subunit
(chloroplast) [Liquidambar formosana]
Length = 337
Score = 474 bits (1221), Expect = e-130
Identities = 237/269 (88%), Positives = 248/269 (92%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYG R+ASICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EPI+LCIGL++ERNRGYRIKTPN+F+D SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLKMERNRGYRIKTPNNFQDRSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKE 6356
DNQHK LP+F FHDRL KL KNKK+
Sbjct: 241 DNQHKTI---LPLFTFHDRLAKLKKNKKK 266
>gb|ADD31228.1| RNA polymerase alpha subunit protein [Gunnera manicata]
Length = 330
Score = 473 bits (1216), Expect = e-130
Identities = 232/270 (85%), Positives = 249/270 (92%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREK+TVSTRTLQWKCVESRTDSKRLYYGRFI+SPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKITVSTRTLQWKCVESRTDSKRLYYGRFIMSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE++L+SN+YG R+ASICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIILKSNIYGTRDASICVRGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EPI+LCI LQIE+NRGYRIKTPN ++DGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIQLQIEKNRGYRIKTPNTYQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNG EKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGKEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQ+K + LP F FHDRL KL KNKKE+
Sbjct: 241 DNQYKVT---LPFFTFHDRLAKLRKNKKEI 267
>ref|YP_008963511.1| RNA polymerase alpha subunit (chloroplast) [Penthorum chinense]
gi|403226812|gb|AFR25691.1| RNA polymerase alpha subunit
(chloroplast) [Penthorum chinense]
Length = 337
Score = 472 bits (1215), Expect = e-130
Identities = 234/270 (86%), Positives = 246/270 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREK+ VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKIRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYG NASIC RGPG VTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTHNASICFRGPGSVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EP++LCIGLQIERNRGY IKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPVDLCIGLQIERNRGYCIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQE+LFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQELLFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEANLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQHK LP+F FH+RL KL KNKKE+
Sbjct: 241 DNQHK---FTLPLFTFHNRLAKLRKNKKEI 267
>gb|ADD31234.1| RNA polymerase alpha subunit protein [Staphylea colchica]
Length = 342
Score = 472 bits (1214), Expect = e-129
Identities = 236/273 (86%), Positives = 247/273 (90%), Gaps = 2/273 (0%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR D KRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADRKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG R+ASIC++GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICIKGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPN--HFRDGSYPIDAVFMP 6083
I PPSVEIVDNTQHIASL EP++LCIGLQIERNRGY IKTPN HF+DGSYPIDAVFMP
Sbjct: 121 IILPPSVEIVDNTQHIASLTEPMDLCIGLQIERNRGYSIKTPNNFHFQDGSYPIDAVFMP 180
Query: 6084 VRNTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFH 6263
VRN NYSIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H
Sbjct: 181 VRNVNYSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEDNGH 240
Query: 6264 FEDNQHKASFLPLPIFAFHDRLDKLTKNKKEMK 6362
E+N HK L LP+F FHDRL KL K KKE K
Sbjct: 241 LENNHHK---LTLPLFTFHDRLAKLRKKKKEQK 270
>gb|ADD31230.1| RNA polymerase alpha subunit protein [Liquidambar styraciflua]
Length = 338
Score = 471 bits (1212), Expect = e-129
Identities = 238/274 (86%), Positives = 249/274 (90%), Gaps = 3/274 (1%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYG R+ASICVRGPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRDASICVRGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPPSVEIVDNTQHIASL EPI+LCIGL++ERNRGYRIKTPN+F+D SYPIDAVFMPVR
Sbjct: 121 IISPPSVEIVDNTQHIASLTEPIDLCIGLKMERNRGYRIKTPNNFQDRSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNENEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKL---TKNKKEMK 6362
DNQHK LP+F FHDRL KL TK KK +K
Sbjct: 241 DNQHKTI---LPLFTFHDRLAKLKEKTKKKKALK 271
>ref|YP_004021348.1| RNA polymerase alpha subunit [Theobroma cacao]
gi|309321298|gb|ADO64841.1| RNA polymerase alpha subunit
[Theobroma cacao] gi|328924811|gb|ADO64922.2| RNA
polymerase alpha subunit [Theobroma cacao]
gi|371925968|gb|AEX57758.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926050|gb|AEX57839.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926132|gb|AEX57920.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926214|gb|AEX58001.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926296|gb|AEX58082.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926378|gb|AEX58163.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926460|gb|AEX58244.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926542|gb|AEX58325.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926624|gb|AEX58406.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
gi|371926788|gb|AEX58568.1| RNA polymerase alpha subunit
(chloroplast) [Theobroma cacao]
Length = 327
Score = 469 bits (1207), Expect = e-129
Identities = 233/270 (86%), Positives = 244/270 (90%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESRTDSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG RNA IC +GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PPSVEIVDNTQHIASL EPI+LCIGLQIERNRGYRIKTPN+F DGSYP+DAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTPNNFHDGSYPLDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQH + LP F FHDRL KL K KKE+
Sbjct: 241 NNQHNVT---LPFFPFHDRLAKLRKKKKEI 267
>ref|YP_008577440.1| RNA polymerase alpha subunit (chloroplast) [Eucalyptus guilfoylei]
gi|442568679|gb|AGC58849.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus guilfoylei]
Length = 337
Score = 468 bits (1204), Expect = e-128
Identities = 233/270 (86%), Positives = 246/270 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG RNASICV+GPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I P SVEIVDNTQ+IA+L EPINLCIGLQIERNRGY IKTP +F+DGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + HFE
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHFE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQ+K + LP F FHDRL KL K KKE+
Sbjct: 241 NNQYKVT---LPFFTFHDRLAKLRKTKKEI 267
>gb|ADM14340.1| RNA polymerase alpha subunit [Punica granatum]
Length = 337
Score = 468 bits (1203), Expect = e-128
Identities = 232/268 (86%), Positives = 244/268 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG NASICV+GPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PPSVEI+DNTQHIASL EPINLCIGLQIERNRGY IKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIASLMEPINLCIGLQIERNRGYHIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKK 6353
+NQ+K + LP+F FHDRL KL K KK
Sbjct: 241 NNQYKVT---LPLFTFHDRLTKLRKTKK 265
>gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]
Length = 337
Score = 468 bits (1203), Expect = e-128
Identities = 233/270 (86%), Positives = 245/270 (90%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG +ASICVRGPGYVT QD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PP VEIVDNTQHIASL EPI+LCIGLQIERNRGY IKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH Y NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE + H E
Sbjct: 181 NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQH +PLP F FHD+L KL KNKK++
Sbjct: 241 DNQHT---IPLPPFNFHDKLAKLRKNKKKI 267
>gb|ADM92734.1| RNA polymerase alpha subunit protein [Davidia involucrata]
Length = 328
Score = 467 bits (1202), Expect = e-128
Identities = 230/270 (85%), Positives = 248/270 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFE+IPHEYSTIVG QESVHEILMNLKE+VLRSNLYG +ASICV+GPGYVTAQD
Sbjct: 61 CITRAKFERIPHEYSTIVGTQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I SPP VEIVD+TQ+IASL EPI+LCIGLQIERNRGYRIK PN+F+DGSYPIDAVFMPVR
Sbjct: 121 IISPPYVEIVDSTQYIASLTEPIDLCIGLQIERNRGYRIKMPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
DNQHK + LP+F FH++L KL KNKK++
Sbjct: 241 DNQHKVT---LPLFTFHEKLAKLRKNKKKI 267
>gb|ADH94376.1| RNA polymerase alpha subunit [Syzygium cumini]
Length = 337
Score = 467 bits (1202), Expect = e-128
Identities = 233/270 (86%), Positives = 246/270 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG RNASICV+GPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I P SVEIVDNTQ+IASL EPINLCIGLQIERNRGY IKTP +F+DGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIASLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQ+K + LP+F FHDRL KL K KKE+
Sbjct: 241 NNQYKVT---LPLFTFHDRLVKLRKTKKEI 267
>ref|YP_008965524.1| RNA polymerase alpha subunit [Pyrus spinosa]
gi|565666496|emb|CDI73596.1| RNA polymerase alpha subunit
[Pyrus spinosa]
Length = 331
Score = 467 bits (1201), Expect = e-128
Identities = 231/270 (85%), Positives = 248/270 (91%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKVTVSTRTLQWKCVESR DSKRLYYGRFIL+PL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VL+SNLYG RNASICV+GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLKSNLYGTRNASICVKGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PPSVEIVDNTQ+IA+L EPINLCI LQIERNRGYRIKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH Y NGNEKQEILFLEIWTNGSLTPKEALHEASRNLI+LFIPFLHAEE + H E
Sbjct: 181 NANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQHK + LP+F +HDRL K KNKKE+
Sbjct: 241 NNQHKVT---LPLFTYHDRLAKQRKNKKEI 267
>gb|ADM14339.1| RNA polymerase alpha subunit [Punica granatum]
Length = 337
Score = 467 bits (1201), Expect = e-128
Identities = 232/270 (85%), Positives = 245/270 (90%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRS LYG NASICV+GPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSYLYGTCNASICVKGPGCVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PPSVEI+DNTQHIASL EPINLCIGLQIERNRGY IKTPN+F+DGSYPIDAVFMPVR
Sbjct: 121 IILPPSVEIIDNTQHIASLMEPINLCIGLQIERNRGYHIKTPNNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEE + H E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLLIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQ+K + LP+F FHDRL KL K KKE+
Sbjct: 241 NNQYKVT---LPLFTFHDRLTKLRKTKKEI 267
>ref|YP_008577525.1| RNA polymerase alpha subunit (chloroplast) [Eucalyptus erythrocorys]
gi|442568765|gb|AGC58934.1| RNA polymerase alpha subunit
(chloroplast) [Eucalyptus erythrocorys]
Length = 337
Score = 466 bits (1200), Expect = e-128
Identities = 232/270 (85%), Positives = 245/270 (90%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESR DSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAKFEKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG RNASICV+GPG VTAQD
Sbjct: 61 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I P SVEIVDNTQ+IA+L EPINLCIGLQIERNRGY IKTP +F+DGSYPIDAVFMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID FIPFLHAEE +FH E
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDFFIPFLHAEEENFHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQ+K + LP F FHDRL KL K KKE+
Sbjct: 241 NNQYKVT---LPFFTFHDRLAKLRKTKKEI 267
>gb|AEX58487.1| RNA polymerase alpha subunit (chloroplast) [Theobroma grandiflorum]
Length = 327
Score = 466 bits (1200), Expect = e-128
Identities = 232/270 (85%), Positives = 244/270 (90%)
Frame = +3
Query: 5550 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLKKGQADTIGVAMRRALLGEIEGT 5729
MVREKV VSTRTLQWKCVESRTDSKRLYYGRFILSPL KGQADTIG+AMRRALLGEIEGT
Sbjct: 1 MVREKVKVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60
Query: 5730 CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGIRNASICVRGPGYVTAQD 5909
CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VLRSNLYG RNA IC +GPGYVTAQD
Sbjct: 61 CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNAFICAKGPGYVTAQD 120
Query: 5910 IASPPSVEIVDNTQHIASLKEPINLCIGLQIERNRGYRIKTPNHFRDGSYPIDAVFMPVR 6089
I PPSVEIVDNTQ+IASL EPI+LCIGLQIERNRGYRIKTPN+F DGSYP+DAVFMPVR
Sbjct: 121 IILPPSVEIVDNTQNIASLTEPIDLCIGLQIERNRGYRIKTPNNFHDGSYPLDAVFMPVR 180
Query: 6090 NTNYSIHYYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEGSFHFE 6269
N N+SIH YGN NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE + H E
Sbjct: 181 NANHSIHCYGNDNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240
Query: 6270 DNQHKASFLPLPIFAFHDRLDKLTKNKKEM 6359
+NQH + LP F FHDRL KL K KKE+
Sbjct: 241 NNQHNVT---LPFFPFHDRLAKLRKKKKEI 267