BLASTX nr result

ID: Ophiopogon27_contig00054820 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00054820
         (375 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020081720.1| uncharacterized protein LOC109705399 [Ananas...    38   2e-07

>ref|XP_020081720.1| uncharacterized protein LOC109705399 [Ananas comosus]
          Length = 198

 Score = 38.1 bits (87), Expect(3) = 2e-07
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 1   RFERMWLRQEGFRDCMAYLVATSDP*VSHCRQFSGKIWICS-ECKKWCKTNFYSVKKKKN 177
           RFER+WL +E F   +        P  S     S K+  C    K+W KTNFYS+   K 
Sbjct: 55  RFERVWLSKEDFAANVPCWWNEVTPKTSAILTLSAKLRHCRIRIKEWRKTNFYSISSTKR 114

Query: 178 L 180
           L
Sbjct: 115 L 115



 Score = 33.5 bits (75), Expect(3) = 2e-07
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +2

Query: 317 RSKVRWLIEGDNNTKFFH 370
           RSK  WL EGD+NTKFFH
Sbjct: 161 RSKQFWLEEGDSNTKFFH 178



 Score = 30.0 bits (66), Expect(3) = 2e-07
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 204 VELLEESGDLSSVERAQREYLNVEYKLLTNKE*VIWN 314
           ++LLEE   LS   R +R+ +  +++++  +E ++WN
Sbjct: 123 IDLLEERFALSHESRDRRDAIKAQFQIILQEEEILWN 159


Top