BLASTX nr result
ID: Ophiopogon27_contig00052008
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00052008
(572 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|POG75724.1| hypothetical protein GLOIN_2v1561717 [Rhizophagus... 150 2e-40
gb|PKY22649.1| hypothetical protein RhiirB3_436660 [Rhizophagus ... 150 5e-40
gb|PKK69999.1| hypothetical protein RhiirC2_780273 [Rhizophagus ... 150 5e-40
gb|PKC07869.1| hypothetical protein RhiirA5_417654 [Rhizophagus ... 150 5e-40
dbj|GBC50870.1| U11/U12 small nuclear ribonucleoprotein 65 kDa p... 147 1e-38
gb|EXX54920.1| hypothetical protein RirG_230110 [Rhizophagus irr... 137 5e-35
ref|XP_004920860.1| PREDICTED: RNA-binding protein 40-like [Xeno... 71 6e-12
gb|AAI59025.1| rnpc3 protein, partial [Xenopus tropicalis] 71 7e-11
ref|NP_001016017.1| RNA-binding protein 40 [Xenopus tropicalis] ... 71 7e-11
ref|XP_012816491.1| PREDICTED: RNA-binding protein 40 isoform X1... 71 7e-11
ref|XP_010017746.1| PREDICTED: RNA-binding protein 40, partial [... 69 2e-10
gb|KFQ54071.1| RNA-binding protein 40, partial [Nestor notabilis] 69 2e-10
gb|EPZ32198.1| hypothetical protein O9G_002550 [Rozella allomyci... 69 3e-10
gb|OCA13857.1| hypothetical protein XENTR_v90029041mg [Xenopus t... 66 3e-10
ref|XP_018114136.1| PREDICTED: RNA-binding protein 40-like [Xeno... 69 4e-10
pdb|5OBN|A Chain A, NMR solution structure of U11/U12 65K protei... 65 4e-10
ref|XP_012432562.1| PREDICTED: RNA-binding protein 40-like [Taen... 65 5e-10
pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U... 65 5e-10
ref|XP_020907511.1| RNA-binding protein 40-like isoform X2 [Exai... 68 5e-10
ref|XP_020907510.1| RNA-binding protein 40-like isoform X1 [Exai... 68 6e-10
>gb|POG75724.1| hypothetical protein GLOIN_2v1561717 [Rhizophagus irregularis DAOM
181602=DAOM 197198]
Length = 390
Score = 150 bits (379), Expect = 2e-40
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 317 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 376
Query: 390 YNKPMVIQFSNKVS 349
YNKPMVIQFSNKVS
Sbjct: 377 YNKPMVIQFSNKVS 390
>gb|PKY22649.1| hypothetical protein RhiirB3_436660 [Rhizophagus irregularis]
Length = 445
Score = 150 bits (379), Expect = 5e-40
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 372 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 431
Query: 390 YNKPMVIQFSNKVS 349
YNKPMVIQFSNKVS
Sbjct: 432 YNKPMVIQFSNKVS 445
>gb|PKK69999.1| hypothetical protein RhiirC2_780273 [Rhizophagus irregularis]
Length = 445
Score = 150 bits (379), Expect = 5e-40
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 372 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 431
Query: 390 YNKPMVIQFSNKVS 349
YNKPMVIQFSNKVS
Sbjct: 432 YNKPMVIQFSNKVS 445
>gb|PKC07869.1| hypothetical protein RhiirA5_417654 [Rhizophagus irregularis]
gb|PKC63427.1| hypothetical protein RhiirA1_463771 [Rhizophagus irregularis]
gb|PKY54197.1| hypothetical protein RhiirA4_472867 [Rhizophagus irregularis]
Length = 445
Score = 150 bits (379), Expect = 5e-40
Identities = 72/74 (97%), Positives = 73/74 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 372 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 431
Query: 390 YNKPMVIQFSNKVS 349
YNKPMVIQFSNKVS
Sbjct: 432 YNKPMVIQFSNKVS 445
>dbj|GBC50870.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Rhizophagus
irregularis DAOM 181602]
Length = 458
Score = 147 bits (371), Expect = 1e-38
Identities = 70/72 (97%), Positives = 71/72 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 372 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 431
Query: 390 YNKPMVIQFSNK 355
YNKPMVIQFSNK
Sbjct: 432 YNKPMVIQFSNK 443
>gb|EXX54920.1| hypothetical protein RirG_230110 [Rhizophagus irregularis DAOM
197198w]
Length = 442
Score = 137 bits (345), Expect = 5e-35
Identities = 65/67 (97%), Positives = 66/67 (98%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYIL 391
IKNLAPKK KKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVE+ATQALNDVHGYIL
Sbjct: 372 IKNLAPKKVKKEDLEYLFGRYFHTKSQMDIRLHPRGQAFVIFPNVEMATQALNDVHGYIL 431
Query: 390 YNKPMVI 370
YNKPMVI
Sbjct: 432 YNKPMVI 438
>ref|XP_004920860.1| PREDICTED: RNA-binding protein 40-like [Xenopus tropicalis]
Length = 175
Score = 70.9 bits (172), Expect = 6e-12
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+A+++DL+++FGR+ K+ DIRL +GQAF+ FP ++A QA
Sbjct: 82 VKNLS-KQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQA 140
Query: 417 LNDVHGYILYNKPMVIQFS 361
L VHGY+L++KPMVIQF+
Sbjct: 141 LKHVHGYVLHDKPMVIQFA 159
>gb|AAI59025.1| rnpc3 protein, partial [Xenopus tropicalis]
Length = 520
Score = 70.9 bits (172), Expect = 7e-11
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+A+++DL+++FGR+ K+ DIRL +GQAF+ FP ++A QA
Sbjct: 427 VKNLS-KQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQA 485
Query: 417 LNDVHGYILYNKPMVIQFS 361
L VHGY+L++KPMVIQF+
Sbjct: 486 LKHVHGYVLHDKPMVIQFA 504
>ref|NP_001016017.1| RNA-binding protein 40 [Xenopus tropicalis]
emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus tropicalis]
Length = 527
Score = 70.9 bits (172), Expect = 7e-11
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+A+++DL+++FGR+ K+ DIRL +GQAF+ FP ++A QA
Sbjct: 434 VKNLS-KQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQA 492
Query: 417 LNDVHGYILYNKPMVIQFS 361
L VHGY+L++KPMVIQF+
Sbjct: 493 LKHVHGYVLHDKPMVIQFA 511
>ref|XP_012816491.1| PREDICTED: RNA-binding protein 40 isoform X1 [Xenopus tropicalis]
gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus tropicalis]
gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus tropicalis]
gb|OCA38663.1| hypothetical protein XENTR_v90012179mg [Xenopus tropicalis]
gb|OCA38664.1| hypothetical protein XENTR_v90012179mg [Xenopus tropicalis]
Length = 527
Score = 70.9 bits (172), Expect = 7e-11
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+A+++DL+++FGR+ K+ DIRL +GQAF+ FP ++A QA
Sbjct: 434 VKNLS-KQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQA 492
Query: 417 LNDVHGYILYNKPMVIQFS 361
L VHGY+L++KPMVIQF+
Sbjct: 493 LKHVHGYVLHDKPMVIQFA 511
>ref|XP_010017746.1| PREDICTED: RNA-binding protein 40, partial [Nestor notabilis]
Length = 479
Score = 69.3 bits (168), Expect = 2e-10
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQM-----DIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K+ +++DL+++FGRY +S++ DIRL +GQAF+ PN + AT+A
Sbjct: 386 VKNLA-KQVQEKDLKFIFGRYVDFQSEVERNMFDIRLMKEGRMKGQAFIGLPNEKAATKA 444
Query: 417 LNDVHGYILYNKPMVIQFS 361
LN+ +GY+L+ KPMV+QF+
Sbjct: 445 LNEANGYVLFEKPMVVQFA 463
>gb|KFQ54071.1| RNA-binding protein 40, partial [Nestor notabilis]
Length = 480
Score = 69.3 bits (168), Expect = 2e-10
Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQM-----DIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K+ +++DL+++FGRY +S++ DIRL +GQAF+ PN + AT+A
Sbjct: 387 VKNLA-KQVQEKDLKFIFGRYVDFQSEVERNMFDIRLMKEGRMKGQAFIGLPNEKAATKA 445
Query: 417 LNDVHGYILYNKPMVIQFS 361
LN+ +GY+L+ KPMV+QF+
Sbjct: 446 LNEANGYVLFEKPMVVQFA 464
>gb|EPZ32198.1| hypothetical protein O9G_002550 [Rozella allomycis CSF55]
Length = 321
Score = 68.6 bits (166), Expect = 3e-10
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLF-GRYFHTKSQMDIRLHPRGQAFVIFPNVEIATQALNDVHGYI 394
IKNL KK KKEDL ++F GR +GQAF+ FP+VEIA +AL++VHGYI
Sbjct: 256 IKNLDHKKVKKEDLRFVFEGRM-------------KGQAFIKFPSVEIAQKALDEVHGYI 302
Query: 393 LYNKPMVIQ 367
LY+KPM+I+
Sbjct: 303 LYDKPMIIE 311
>gb|OCA13857.1| hypothetical protein XENTR_v90029041mg [Xenopus tropicalis]
Length = 171
Score = 66.2 bits (160), Expect = 3e-10
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 9/76 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+A+++DL+++FGR+ K+ DIRL +GQAF+ FP ++A QA
Sbjct: 82 VKNLS-KQAEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQA 140
Query: 417 LNDVHGYILYNKPMVI 370
L VHGY+L++KPMVI
Sbjct: 141 LKHVHGYVLHDKPMVI 156
>ref|XP_018114136.1| PREDICTED: RNA-binding protein 40-like [Xenopus laevis]
gb|OCT85273.1| hypothetical protein XELAEV_18023438mg [Xenopus laevis]
Length = 527
Score = 68.6 bits (166), Expect = 4e-10
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFH-----TKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNL+ K+ +++DL+++FGR+ K+ DIRL +GQAF+ FP +A QA
Sbjct: 434 VKNLS-KQVEEKDLKFIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTENVAAQA 492
Query: 417 LNDVHGYILYNKPMVIQFS 361
L VHGY+L++KPMVIQF+
Sbjct: 493 LKHVHGYVLHDKPMVIQFA 511
>pdb|5OBN|A Chain A, NMR solution structure of U11/U12 65K protein's C-terminal
RRM domain (381-516)
Length = 136
Score = 65.1 bits (157), Expect = 4e-10
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQ-----MDIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K +++DL+Y+FGRY S+ DIRL +GQAF+ PN + A +A
Sbjct: 44 VKNLA-KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKA 102
Query: 417 LNDVHGYILYNKPMVIQFS 361
L + +GY+L+ KPMV+QF+
Sbjct: 103 LKEANGYVLFGKPMVVQFA 121
>ref|XP_012432562.1| PREDICTED: RNA-binding protein 40-like [Taeniopygia guttata]
Length = 143
Score = 65.1 bits (157), Expect = 5e-10
Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQM-----DIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K+ +++DL+++FGRY +S++ DIRL +GQAF+ PN + A +A
Sbjct: 50 VKNLA-KQVQEKDLKFIFGRYVDFQSEVERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKA 108
Query: 417 LNDVHGYILYNKPMVIQFS 361
L + +GY+L+ KPMV+QF+
Sbjct: 109 LKEANGYVLFEKPMVVQFA 127
>pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U12 65K PROTEIN
Length = 143
Score = 65.1 bits (157), Expect = 5e-10
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYFHTKSQ-----MDIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K +++DL+Y+FGRY S+ DIRL +GQAF+ PN + A +A
Sbjct: 50 VKNLA-KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKA 108
Query: 417 LNDVHGYILYNKPMVIQFS 361
L + +GY+L+ KPMV+QF+
Sbjct: 109 LKEANGYVLFGKPMVVQFA 127
>ref|XP_020907511.1| RNA-binding protein 40-like isoform X2 [Exaiptasia pallida]
Length = 453
Score = 68.2 bits (165), Expect = 5e-10
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYF-----HTKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K+ +++DL+Y+FGRY K + DIR +GQAF+ P+ A +A
Sbjct: 367 VKNLA-KQVEEKDLQYIFGRYVDFSSEEEKDRFDIRHMKEGRMKGQAFITLPSESKAKRA 425
Query: 417 LNDVHGYILYNKPMVIQFS 361
L DVHGYIL+ KPMVIQF+
Sbjct: 426 LKDVHGYILHGKPMVIQFA 444
>ref|XP_020907510.1| RNA-binding protein 40-like isoform X1 [Exaiptasia pallida]
Length = 472
Score = 68.2 bits (165), Expect = 6e-10
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = -3
Query: 570 IKNLAPKKAKKEDLEYLFGRYF-----HTKSQMDIRL----HPRGQAFVIFPNVEIATQA 418
+KNLA K+ +++DL+Y+FGRY K + DIR +GQAF+ P+ A +A
Sbjct: 386 VKNLA-KQVEEKDLQYIFGRYVDFSSEEEKDRFDIRHMKEGRMKGQAFITLPSESKAKRA 444
Query: 417 LNDVHGYILYNKPMVIQFS 361
L DVHGYIL+ KPMVIQF+
Sbjct: 445 LKDVHGYILHGKPMVIQFA 463