BLASTX nr result
ID: Ophiopogon27_contig00051110
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00051110
(634 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|POG77578.1| pseudouridine synthase [Rhizophagus irregularis D... 365 e-124
dbj|GBC38765.1| rlua family pseudouridine synthase [Rhizophagus ... 365 e-124
gb|PKC11887.1| pseudouridine synthase [Rhizophagus irregularis] 365 e-124
gb|PKY41040.1| pseudouridine synthase [Rhizophagus irregularis] 365 e-124
gb|PKC71223.1| pseudouridine synthase [Rhizophagus irregularis] 365 e-124
gb|PKY13479.1| pseudouridine synthase [Rhizophagus irregularis] 362 e-123
gb|PKK73601.1| pseudouridine synthase [Rhizophagus irregularis] 362 e-123
ref|XP_016613171.1| RluA family pseudouridine synthase [Spizello... 136 3e-34
gb|PCJ02484.1| RNA pseudouridine synthase [OCS116 cluster bacter... 128 5e-32
gb|OJU32145.1| RNA pseudouridine synthase [Alphaproteobacteria b... 127 9e-32
ref|WP_020696912.1| RluA family pseudouridine synthase [Reyranel... 127 1e-31
gb|PCI85305.1| RNA pseudouridine synthase [Rhizobiales bacterium] 126 3e-31
gb|ODT99373.1| RNA pseudouridine synthase [Rhodospirillales bact... 125 4e-31
ref|WP_019646015.1| RluA family pseudouridine synthase [Novispir... 124 2e-30
gb|OUR77438.1| RNA pseudouridine synthase [Alphaproteobacteria b... 123 2e-30
ref|WP_090202460.1| RluA family pseudouridine synthase [Loktanel... 122 7e-30
gb|PLX34311.1| RluA family pseudouridine synthase [Rhizobiales b... 121 1e-29
ref|WP_015827885.1| RluA family pseudouridine synthase [Hirschia... 122 1e-29
gb|AGI73622.1| ribosomal large subunit pseudouridine synthase C ... 120 1e-29
ref|WP_015597654.1| RluA family pseudouridine synthase [Hyphomic... 120 2e-29
>gb|POG77578.1| pseudouridine synthase [Rhizophagus irregularis DAOM 181602=DAOM
197198]
Length = 352
Score = 365 bits (937), Expect = e-124
Identities = 182/213 (85%), Positives = 198/213 (92%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNEVKLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 40 SDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 99
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 100 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 159
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 160 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 219
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEK
Sbjct: 220 MYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEK 252
>dbj|GBC38765.1| rlua family pseudouridine synthase [Rhizophagus irregularis DAOM
181602]
Length = 378
Score = 365 bits (937), Expect = e-124
Identities = 182/213 (85%), Positives = 198/213 (92%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNEVKLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 31 SDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 90
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 91 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 150
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 151 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 210
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEK
Sbjct: 211 MYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEK 243
>gb|PKC11887.1| pseudouridine synthase [Rhizophagus irregularis]
Length = 384
Score = 365 bits (937), Expect = e-124
Identities = 181/213 (84%), Positives = 199/213 (93%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNE+KLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 37 SDMRLDRYLHLRTNLPTSTIQKKIRKNEIKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 96
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 97 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 156
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 157 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 216
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL+HTKI+ PIRYGGKPPFEK
Sbjct: 217 MYVAIVTKFLPRNLSHTKISIPIRYGGKPPFEK 249
>gb|PKY41040.1| pseudouridine synthase [Rhizophagus irregularis]
Length = 387
Score = 365 bits (937), Expect = e-124
Identities = 182/213 (85%), Positives = 198/213 (92%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNEVKLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 40 SDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 99
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 100 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 159
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 160 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 219
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEK
Sbjct: 220 MYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEK 252
>gb|PKC71223.1| pseudouridine synthase [Rhizophagus irregularis]
Length = 387
Score = 365 bits (937), Expect = e-124
Identities = 182/213 (85%), Positives = 198/213 (92%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNEVKLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 40 SDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 99
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 100 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 159
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 160 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 219
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL HTKI+ PIRYGGKPPFEK
Sbjct: 220 MYVAIVTKFLPRNLAHTKISIPIRYGGKPPFEK 252
>gb|PKY13479.1| pseudouridine synthase [Rhizophagus irregularis]
Length = 346
Score = 362 bits (930), Expect = e-123
Identities = 180/211 (85%), Positives = 197/211 (93%), Gaps = 2/211 (0%)
Frame = -1
Query: 628 MRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQPGD 455
MRLDRYLH RTNLPTS IQKKIRKNE+KLK HEN++LDS+++++ KT LSYKV+PGD
Sbjct: 1 MRLDRYLHLRTNLPTSTIQKKIRKNEIKLKPLAHENEELDSNEMRIKKTKTLSYKVRPGD 60
Query: 454 VVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQGGP 275
VV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQGGP
Sbjct: 61 VVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQGGP 120
Query: 274 KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY 95
KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY
Sbjct: 121 KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKMY 180
Query: 94 VAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
VAIVTKFLPRNL+HTKI+ PIRYGGKPPFEK
Sbjct: 181 VAIVTKFLPRNLSHTKISIPIRYGGKPPFEK 211
>gb|PKK73601.1| pseudouridine synthase [Rhizophagus irregularis]
Length = 387
Score = 362 bits (930), Expect = e-123
Identities = 181/213 (84%), Positives = 198/213 (92%), Gaps = 2/213 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKT--LSYKVQP 461
+DMRLDRYLH RTNLPTS IQKKIRKNEVKLK HEN++LDS+++++ KT LSYKV+P
Sbjct: 40 SDMRLDRYLHLRTNLPTSTIQKKIRKNEVKLKPLAHENEELDSNEMRIKKTKTLSYKVRP 99
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
GDVV +RSTDLYKEAKLVRPTR A +SFS EI+SIRSMIVY+D+EI+VINKPQGLATQG
Sbjct: 100 GDVVLVRSTDLYKEAKLVRPTRLAIKSFSENEIESIRSMIVYKDDEIIVINKPQGLATQG 159
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK
Sbjct: 160 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 219
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
MYVAIVTKFLPRNL+HTKI+ PIRYGGKP FEK
Sbjct: 220 MYVAIVTKFLPRNLSHTKISIPIRYGGKPSFEK 252
>ref|XP_016613171.1| RluA family pseudouridine synthase [Spizellomyces punctatus DAOM
BR117]
gb|KND05132.1| RluA family pseudouridine synthase [Spizellomyces punctatus DAOM
BR117]
Length = 460
Score = 136 bits (342), Expect = 3e-34
Identities = 91/217 (41%), Positives = 129/217 (59%), Gaps = 8/217 (3%)
Frame = -1
Query: 628 MRLDRYLHFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQ-LNKTLSYKVQPGDV 452
+RLD +L R KIRKN +LK HE S + ++ + +V GDV
Sbjct: 125 LRLDEFLEERL---------KIRKNLARLKVLNHEVAVRGSAHARFVDLKPAGQVHAGDV 175
Query: 451 VSIRSTDLYK-EAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQGGP 275
V + K EA++ + ++ E ++EI+ +RS ++Y+DE++LV+NKP GLA QGG
Sbjct: 176 VVVVMPKRRKPEAEMTKKEKKVLEEQLQDEIEVLRSNVLYKDEQVLVLNKPAGLAVQGGS 235
Query: 274 KTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRES--TIEK 101
K H+D LL LQFD +PPRLVHRLDK+TTGAL+L RT+ AA +LS+LF+ + ++K
Sbjct: 236 KMGIHLDKLLDGLQFDAAEPPRLVHRLDKDTTGALLLARTKEAAVRLSNLFKSAGDGVQK 295
Query: 100 MYVAIVTKFLPRNLT----HTKINTPIRYGGKPPFEK 2
Y+A+V LP T T+I T I GKP EK
Sbjct: 296 SYLAVVCS-LPEAFTSQSEFTQIVTGIVQVGKPGVEK 331
>gb|PCJ02484.1| RNA pseudouridine synthase [OCS116 cluster bacterium]
Length = 341
Score = 128 bits (321), Expect = 5e-32
Identities = 80/214 (37%), Positives = 124/214 (57%), Gaps = 4/214 (1%)
Frame = -1
Query: 631 DMRLDRYLHFRTNLPT---SMIQKKIRKNEVKLK-TRVHENKDLDSDKVQLNKTLSYKVQ 464
DMRLDR+ F+ + P M+QK +RK ++L R N + +D++
Sbjct: 21 DMRLDRW--FKEHYPDVTFGMLQKLLRKGHIRLDGKRAKSNTRIATDQI----------- 67
Query: 463 PGDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
+R L E ++ ++ S+++I +++M+++ D+EI+V+NKP GLA Q
Sbjct: 68 ------VRVPPLNLETRIY--DKKQQTELSQDDIYYMQNMVLHMDDEIIVLNKPSGLAVQ 119
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG T +H+DG+L AL++D + P+LVHRLDK+T+G L++ RTR AA KL+ F+ T E
Sbjct: 120 GGSNTNRHIDGMLDALKYDLTEKPKLVHRLDKDTSGLLIIARTRVAAQKLTKAFQTKTTE 179
Query: 103 KMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
K Y A+V K P+ L KIN P+ GK EK
Sbjct: 180 KYYWAVV-KSAPK-LREGKINMPLLKLGKKGHEK 211
>gb|OJU32145.1| RNA pseudouridine synthase [Alphaproteobacteria bacterium 65-37]
Length = 335
Score = 127 bits (319), Expect = 9e-32
Identities = 74/192 (38%), Positives = 109/192 (56%), Gaps = 2/192 (1%)
Frame = -1
Query: 634 ADMRLDRYL--HFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQP 461
A +RLDR+ HF +L +QK +R +V++ + E KD +V+P
Sbjct: 24 AGLRLDRWFQKHF-PDLSHGALQKLLRTGQVRIDGKRAEGKD--------------RVEP 68
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
G + + R RAA + S + I+ M++++D+ ++V+NKP GLA QG
Sbjct: 69 GQTIRLPPGVSAAPPSPSRTKPRAAPAVSERDAAEIQRMVIHRDDHVIVLNKPPGLAVQG 128
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
G T KHVDG+L AL+F Y D PRLVHRLDK+T+G L++ RT AA +L+ FR+ EK
Sbjct: 129 GSGTEKHVDGMLDALRFGYEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESFRDRETEK 188
Query: 100 MYVAIVTKFLPR 65
+Y A+V PR
Sbjct: 189 LYWAVVVGVPPR 200
>ref|WP_020696912.1| RluA family pseudouridine synthase [Reyranella massiliensis]
Length = 342
Score = 127 bits (319), Expect = 1e-31
Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 3/193 (1%)
Frame = -1
Query: 634 ADMRLDRYL--HFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQP 461
A +RLDR+ HF L +QK +R +V++ + E KD +V+P
Sbjct: 32 AGLRLDRWFQRHF-PELSHGALQKLLRTGQVRIDGKRAEGKD--------------RVEP 76
Query: 460 GDVVSIRSTDLYKEAKLVRP-TRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
G SIR + L +P RAA + S + I+ M++++D+ ++V+NKP GLA Q
Sbjct: 77 GQ--SIRLPPGVSASPLPKPRAARAAPAVSDRDAAEIQRMVIHRDDHVIVLNKPPGLAVQ 134
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG T KHVDG+L AL+F Y D PRLVHRLDK+T+G L++ RT AA +L+ FR+ E
Sbjct: 135 GGSGTEKHVDGMLDALRFGYEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESFRDRETE 194
Query: 103 KMYVAIVTKFLPR 65
K+Y A+V PR
Sbjct: 195 KLYWAVVVGVPPR 207
>gb|PCI85305.1| RNA pseudouridine synthase [Rhizobiales bacterium]
Length = 341
Score = 126 bits (316), Expect = 3e-31
Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 4/214 (1%)
Frame = -1
Query: 631 DMRLDRYLHFRTNLPT---SMIQKKIRKNEVKLK-TRVHENKDLDSDKVQLNKTLSYKVQ 464
DMRLDR+ F+ + P M+QK +RK ++L R N + +D++
Sbjct: 21 DMRLDRW--FKEHYPDVTFGMLQKLLRKGHIRLDGKRAKSNTRIATDQI----------- 67
Query: 463 PGDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
+R L E ++ ++ S+++I +++M+++ D++I+V+NKP GLA Q
Sbjct: 68 ------VRVPPLNLETRIY--AKKPEGELSQDDIYYMQNMVMHIDDDIIVLNKPSGLAVQ 119
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG T +H+DG+L AL++D + P+LVHRLDK+T+G L++ RTR AA KL+ F+ T E
Sbjct: 120 GGSNTNRHIDGMLSALKYDLTEKPKLVHRLDKDTSGILIIARTRVAAQKLTKAFQTKTTE 179
Query: 103 KMYVAIVTKFLPRNLTHTKINTPIRYGGKPPFEK 2
K Y A+V K +P+ L KIN P+ G+ EK
Sbjct: 180 KYYWAVV-KSVPK-LREGKINMPLLKQGRKGHEK 211
>gb|ODT99373.1| RNA pseudouridine synthase [Rhodospirillales bacterium SCN 65-16]
Length = 342
Score = 125 bits (315), Expect = 4e-31
Identities = 77/193 (39%), Positives = 111/193 (57%), Gaps = 3/193 (1%)
Frame = -1
Query: 634 ADMRLDRYL--HFRTNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQP 461
A +RLDR+ HF L +QK +R +V++ + E KD +V+P
Sbjct: 32 AGLRLDRWFQRHF-PELSHGALQKLLRTGQVRIDGKRAEGKD--------------RVEP 76
Query: 460 GDVVSIRSTDLYKEAKLVRP-TRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
G SIR + L +P RAA + S + I+ M++++D+ ++V+NKP GLA Q
Sbjct: 77 GQ--SIRLPPGVSASPLPKPRAARAAPAVSDRDAAEIQRMVIHRDDHVIVLNKPPGLAVQ 134
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG T KHVDG+L L+F Y D PRLVHRLDK+T+G L++ RT AA +L+ FR+ E
Sbjct: 135 GGSGTEKHVDGMLDGLRFGYEDRPRLVHRLDKDTSGLLLIARTGQAAKRLAESFRDRETE 194
Query: 103 KMYVAIVTKFLPR 65
K+Y A+V PR
Sbjct: 195 KLYWAVVVGVPPR 207
>ref|WP_019646015.1| RluA family pseudouridine synthase [Novispirillum itersonii]
Length = 331
Score = 124 bits (310), Expect = 2e-30
Identities = 70/185 (37%), Positives = 107/185 (57%), Gaps = 1/185 (0%)
Frame = -1
Query: 634 ADMRLDRYLHFR-TNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQPG 458
AD+RLDR+ R L ++K +R +V++ + + D +++PG
Sbjct: 13 ADLRLDRWFKRRYPGLGHGKLEKLLRTGQVRVDGKRMKAGD--------------RLEPG 58
Query: 457 DVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQGG 278
VV + E RP ++ A F+ E+ IR ++++D++++V+NKP GLATQGG
Sbjct: 59 QVVRVPPLGDTSEESRPRPEKKRAPRFTPEDEAMIRDCVIHRDKDVIVLNKPPGLATQGG 118
Query: 277 PKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKM 98
T HVD LL AL+FD + PRLVHRLDK+T+G L+LGRT +AA L+ F+ K+
Sbjct: 119 TNTFLHVDALLDALKFDSEERPRLVHRLDKDTSGVLLLGRTANAAAALAKAFKSREARKV 178
Query: 97 YVAIV 83
Y A+V
Sbjct: 179 YWALV 183
>gb|OUR77438.1| RNA pseudouridine synthase [Alphaproteobacteria bacterium
46_93_T64]
Length = 331
Score = 123 bits (309), Expect = 2e-30
Identities = 67/186 (36%), Positives = 106/186 (56%), Gaps = 3/186 (1%)
Frame = -1
Query: 631 DMRLDRYLHFRTNLPT---SMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQP 461
D+RLDR+ F+++ P ++K +RK EV RV + + D+++ +T+ P
Sbjct: 15 DLRLDRW--FKSHFPGMSHGQLEKYLRKGEV----RVDKKRAKAKDRLEAGQTIRVPPMP 68
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
D + R + S ++ IR M+++ D+E++V+NKP GL QG
Sbjct: 69 ---------DYAFDPNASRSAPKYESGLSDHDVADIRGMVLHMDDEVIVLNKPAGLPVQG 119
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
G K +H+DG+L L++DY + PRL+HRLDK+T+G LV+GRTR A L+ FR T K
Sbjct: 120 GSKQTRHIDGMLDGLRYDYEERPRLIHRLDKDTSGVLVIGRTRKATKHLTEAFRNRTTRK 179
Query: 100 MYVAIV 83
+Y A+V
Sbjct: 180 IYWALV 185
>ref|WP_090202460.1| RluA family pseudouridine synthase [Loktanella litorea]
emb|SFR96835.1| ribosomal large subunit pseudouridine synthase C [Loktanella
litorea]
Length = 351
Score = 122 bits (307), Expect = 7e-30
Identities = 80/206 (38%), Positives = 109/206 (52%), Gaps = 2/206 (0%)
Frame = -1
Query: 634 ADMRLDRYLH-FRTNLPTSMIQKKIRKNEVKLKT-RVHENKDLDSDKVQLNKTLSYKVQP 461
A+ RLDRYL +L I+K RK E+++ RV N LD +
Sbjct: 14 AEQRLDRYLRRLFPHLTQGRIEKMCRKGELRVDGGRVKPNTRLDVGQ------------- 60
Query: 460 GDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQG 281
+R L EA+ + A S+ + I+S ++Y+DE I+ INKP GLATQG
Sbjct: 61 ----KVRIPPLPSEAEAEAARQLAKSGVSKADAKLIQSCVIYKDEHIIAINKPPGLATQG 116
Query: 280 GPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEK 101
G KT +HVDGL AL +DY + PRLVHRLDK+T+G L+L RTR A KL+ + K
Sbjct: 117 GSKTTRHVDGLAEALMYDYDEKPRLVHRLDKDTSGVLLLARTRLMAKKLTENLKHRETRK 176
Query: 100 MYVAIVTKFLPRNLTHTKINTPIRYG 23
+Y A V + H + T I+YG
Sbjct: 177 IYWAAVA-----GVPHPRAGT-IKYG 196
>gb|PLX34311.1| RluA family pseudouridine synthase [Rhizobiales bacterium]
Length = 323
Score = 121 bits (304), Expect = 1e-29
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 3/188 (1%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPT---SMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQ 464
A MRLDR+ FR++ P + ++K +RK EV+L D + + N +++
Sbjct: 14 AGMRLDRW--FRSHFPHLTHARLEKLLRKGEVRL----------DGKRAKAN----VRLE 57
Query: 463 PGDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
PG V + EA+ + RR S E+ +R +I+++D+EI+V+NKP GLA Q
Sbjct: 58 PGQTVRVPPLPAPLEAEQRKKPRRV----SPEDRAFLRGLILHEDDEIIVLNKPAGLAVQ 113
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG T +H+DG+L ALQ + PRLVHRLDK+T+G LVL R R+AA +L LF+ +
Sbjct: 114 GGSNTSRHIDGMLEALQGRASERPRLVHRLDKDTSGVLVLARNRAAAARLGKLFQGRGAD 173
Query: 103 KMYVAIVT 80
K+Y A+VT
Sbjct: 174 KIYWALVT 181
>ref|WP_015827885.1| RluA family pseudouridine synthase [Hirschia baltica]
gb|ACT59735.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 343
Score = 122 bits (305), Expect = 1e-29
Identities = 74/187 (39%), Positives = 111/187 (59%), Gaps = 4/187 (2%)
Frame = -1
Query: 631 DMRLDRYLHFR-TNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQPGD 455
D+RLDR+L R L ++K +RK EV++ D + + S +++PG
Sbjct: 19 DVRLDRWLKRRFPGLTQGQVEKLLRKGEVRV----------DGSRAKS----STRLEPGQ 64
Query: 454 VVSIR---STDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
VV + STD K+ P + S + + I+S+I+Y+DE++ V+NKP GLA Q
Sbjct: 65 VVRVPPMPSTDQGKK----HPQKEEEVYVSPRDAELIQSLILYEDEDVYVLNKPSGLAVQ 120
Query: 283 GGPKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIE 104
GG KTL+HVDG+ +AL D PRLVHRLDK+T+G LVL +T +A ++S FR ++
Sbjct: 121 GGTKTLRHVDGMANALTRPGQDKPRLVHRLDKDTSGLLVLAKTAQSAAEMSKHFRSRELD 180
Query: 103 KMYVAIV 83
K+Y A+V
Sbjct: 181 KIYWAVV 187
>gb|AGI73622.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 280
Score = 120 bits (301), Expect = 1e-29
Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 2/185 (1%)
Frame = -1
Query: 631 DMRLDRYLHFR-TNLPTSMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQP-G 458
D RLDR++ R L I+K RK E+ RV + + +V++ +T+ P
Sbjct: 15 DQRLDRWIKRRFAQLQQGGIEKMCRKGEI----RVDGGRVKSNTRVEVGQTVRIPPLPDA 70
Query: 457 DVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQGG 278
D V R D+ K +I I+ ++Y+D+ ++V+NKP GL TQGG
Sbjct: 71 DEVDDRPRDMTKA-----------------DIQLIQGCVIYKDDHVIVLNKPAGLPTQGG 113
Query: 277 PKTLKHVDGLLHALQFDYPDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTIEKM 98
K L+HVDG+ AL+F Y + PRLVHRLDK+T+G LVL RTR AA L+ FR EK+
Sbjct: 114 SKQLRHVDGMAEALRFGYDERPRLVHRLDKDTSGVLVLARTRMAAKSLTEAFRHRNTEKI 173
Query: 97 YVAIV 83
Y A+V
Sbjct: 174 YWALV 178
>ref|WP_015597654.1| RluA family pseudouridine synthase [Hyphomicrobium denitrificans]
gb|AGK57619.1| pseudouridine synthase [Hyphomicrobium denitrificans 1NES1]
Length = 326
Score = 120 bits (302), Expect = 2e-29
Identities = 74/188 (39%), Positives = 109/188 (57%), Gaps = 4/188 (2%)
Frame = -1
Query: 634 ADMRLDRYLHFRTNLPT---SMIQKKIRKNEVKLKTRVHENKDLDSDKVQLNKTLSYKVQ 464
ADMRLDR+ FR + P + +QK +R +V++ DS + Q N LS +
Sbjct: 13 ADMRLDRW--FRAHFPDVGYTYLQKLLRSGQVRV----------DSKRAQANDRLSAGSE 60
Query: 463 PGDVVSIRSTDLYKEAKLVRPTRRAAESFSREEIDSIRSMIVYQDEEILVINKPQGLATQ 284
IR + ++ K V P R A S+ + D+I MI+Y+D+ +LV+NKP GLA Q
Sbjct: 61 ------IRVPAIIRQPKKVSPNGRPALGVSKGDRDAIEKMILYEDDHVLVLNKPFGLAVQ 114
Query: 283 GGPKTLKHVDGLLHALQFDY-PDPPRLVHRLDKNTTGALVLGRTRSAAGKLSHLFRESTI 107
GG T KH+DG+L + + + PRLVHRLD++TTG L++ +TR AA KL +F+ +
Sbjct: 115 GGTGTKKHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRIFQTRSA 174
Query: 106 EKMYVAIV 83
K Y A+V
Sbjct: 175 AKTYWALV 182