BLASTX nr result

ID: Ophiopogon27_contig00048813 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00048813
         (400 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GBC17338.1| serine/arginine-rich splicing factor 6 [Rhizopha...    79   2e-14
gb|EXX70485.1| hypothetical protein RirG_087010 [Rhizophagus irr...    79   2e-14

>dbj|GBC17338.1| serine/arginine-rich splicing factor 6 [Rhizophagus irregularis
           DAOM 181602]
          Length = 1317

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
 Frame = +2

Query: 101 GKKKLKRTPTTGRGLVRSPISRT--------EIDDENLPLVPKTNSKIQDVKDVNSEKQK 256
           GKKK+KRTPTTGRGL +S I           + DDEN PL  ++NSK Q   D+N +KQ 
Sbjct: 257 GKKKIKRTPTTGRGLGKSQIKSVNETFIKSYDTDDENRPLSSRSNSKAQ---DINFDKQS 313

Query: 257 DENQI-IRSRASSTSANTDKLNSYDADDEIRPLRPKVNSR--DANLDKQ 394
              ++ +R++ S   + T     Y+ DDE RPLR + NS+  D NLDKQ
Sbjct: 314 VILRLNLRTQESKYGSETSSSTLYETDDENRPLRSRSNSKAQDTNLDKQ 362


>gb|EXX70485.1| hypothetical protein RirG_087010 [Rhizophagus irregularis DAOM
           197198w]
          Length = 1382

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
 Frame = +2

Query: 101 GKKKLKRTPTTGRGLVRSPISRT--------EIDDENLPLVPKTNSKIQDVKDVNSEKQK 256
           GKKK+KRTPTTGRGL +S I           + DDEN PL  ++NSK Q   D+N +KQ 
Sbjct: 257 GKKKIKRTPTTGRGLGKSQIKSVNETFIKSYDTDDENRPLSSRSNSKAQ---DINFDKQS 313

Query: 257 DENQI-IRSRASSTSANTDKLNSYDADDEIRPLRPKVNSR--DANLDKQ 394
              ++ +R++ S   + T     Y+ DDE RPLR + NS+  D NLDKQ
Sbjct: 314 VILRLNLRTQESKYGSETSSSTLYETDDENRPLRSRSNSKAQDTNLDKQ 362


Top