BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00048312
         (965 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXX69901.1| hypothetical protein RirG_092250 [Rhizophagus irr...   556   0.0  
gb|ORY02415.1| hypothetical protein K493DRAFT_312073 [Basidiobol...   103   1e-21
emb|CCG83123.1| RNA polymerase II-associated protein 1 homolog [...    90   2e-16
gb|ORY81602.1| RNA polymerase II-associated [Protomyces lactucae...    82   4e-14
gb|ORY42117.1| hypothetical protein LY90DRAFT_458322 [Neocallima...    81   2e-13
ref|XP_020618250.1| RNA polymerase II-associated factor 1 homolo...    79   1e-12
gb|ORX82210.1| hypothetical protein BCR32DRAFT_232106 [Anaeromyc...    78   2e-12
dbj|GAA51648.1| RNA polymerase II-associated factor 1 homolog [C...    77   1e-11
gb|OON13566.1| Paf1, partial [Opisthorchis viverrini]                  76   1e-11
ref|XP_018734393.1| Paf1p [Sugiyamaella lignohabitans] >gi|10263...    75   2e-11
emb|CAX73210.1| Putative DNA helicase INO80 [Schistosoma japonicum]    75   2e-11
ref|XP_504253.1| YALI0E22022p [Yarrowia lipolytica CLIB122] >gi|...    75   3e-11
ref|XP_002737978.2| PREDICTED: RNA polymerase II-associated fact...    75   4e-11
ref|XP_019044737.1| RNA polymerase II-associated factor 1 [Kwoni...    74   8e-11
gb|ORY35540.1| RNA polymerase II-associated [Naematelia encephala]     73   1e-10
gb|KZT07427.1| hypothetical protein LAESUDRAFT_724896 [Laetiporu...    73   1e-10
ref|XP_022788023.1| RNA polymerase II-associated factor 1 homolo...    73   1e-10
ref|XP_014252209.2| RNA polymerase II-associated factor 1 homolo...    74   1e-10
ref|XP_014677153.1| PREDICTED: RNA polymerase II-associated fact...    73   1e-10
gb|PIK44088.1| putative RNA polymerase II-associated factor 1-li...    71   2e-10

>gb|EXX69901.1| hypothetical protein RirG_092250 [Rhizophagus irregularis DAOM
           197198w]
 dbj|GBC45943.1| RNA polymerase II-associated factor 1 [Rhizophagus irregularis DAOM
           181602]
 gb|PKC16942.1| hypothetical protein RhiirA5_466331 [Rhizophagus irregularis]
 gb|PKC76041.1| hypothetical protein RhiirA1_406853 [Rhizophagus irregularis]
 gb|PKK79365.1| hypothetical protein RhiirC2_727400 [Rhizophagus irregularis]
 gb|PKY13404.1| hypothetical protein RhiirB3_398764 [Rhizophagus irregularis]
 gb|PKY37743.1| hypothetical protein RhiirA4_530850 [Rhizophagus irregularis]
 gb|POG64010.1| RNA polymerase II-associated [Rhizophagus irregularis DAOM
           181602=DAOM 197198]
          Length = 442

 Score =  556 bits (1432), Expect = 0.0
 Identities = 273/306 (89%), Positives = 281/306 (91%)
 Frame = +2

Query: 47  RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGM 226
           RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQ+SRLPLISDYDLGM
Sbjct: 11  RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQASRLPLISDYDLGM 70

Query: 227 KTELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK 406
           KTELSDYPGLFLGDE+GLNPRRE TSFDINDQAL CVGKDPVTV QDL RLKRLSRNEPK
Sbjct: 71  KTELSDYPGLFLGDESGLNPRRETTSFDINDQALLCVGKDPVTVNQDLSRLKRLSRNEPK 130

Query: 407 EWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPEF 586
           EWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAID+TFEKANDPEF
Sbjct: 131 EWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDRTFEKANDPEF 190

Query: 587 LSTLKHPANPSLKVKEIIPVFPEFQESLRGQNKFDRDPWXXXXXXXXXXXXXXXXLRMSK 766
           LSTLKHP+N SLKVKEIIPVFPEFQESLRGQNKFDRDPW                LRMSK
Sbjct: 191 LSTLKHPSNSSLKVKEIIPVFPEFQESLRGQNKFDRDPWEGYEIDDDEDKGAEKELRMSK 250

Query: 767 AIIIPGEDRYGKNLFRLYVPNIESAKRLVKIKSFEDTKGETYQFKWVRDYNIDSDTVMEN 946
           AIIIPGEDR+GKNLFRLYVP++ESA RLVKIKSF+DTK E Y FKWVRDYNIDSDTVMEN
Sbjct: 251 AIIIPGEDRHGKNLFRLYVPDVESANRLVKIKSFDDTKNEAYHFKWVRDYNIDSDTVMEN 310

Query: 947 QDLLFV 964
           QDLLFV
Sbjct: 311 QDLLFV 316


>gb|ORY02415.1| hypothetical protein K493DRAFT_312073 [Basidiobolus meristosporus
           CBS 931.73]
          Length = 370

 Score =  103 bits (258), Expect = 1e-21
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 5/294 (1%)
 Frame = +2

Query: 62  YICSLKYRHIPPTPEHLP--LDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGMKTE 235
           ++C+++Y+   P P  +P  LD+  + +        S  ES   +  PL ++ DLGM  +
Sbjct: 11  FLCNVRYQTALPPPPFVPKLLDVPKSTERFVEYRHSSLVES---TPYPLHTNADLGMPID 67

Query: 236 LSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPKEWL 415
           L          E   NP  ++   D  D+AL    K P        R       +   WL
Sbjct: 68  LFQLDAFSKRKEKP-NPSAKL---DPKDRALLV--KPPAEGFGARSR-------QFVPWL 114

Query: 416 RRTQYLDSEAVYKTNKTTTMESRMA-ALKANLDLVDQSHEEQIKAIDKTFEKANDPEFLS 592
           RRT+Y+ SE    + K   +ES    +    L+ +D S E QI ++++TF+ ANDP+ +S
Sbjct: 115 RRTEYISSEITRSSPKGKAVESSFGLSATKGLEDIDYSLEGQIASVERTFKSANDPDLMS 174

Query: 593 TLKHPANPSLKVKEIIPVFPEFQESLRGQNKFDRDPWXXXXXXXXXXXXXXXXLRMSKAI 772
            LKHP NP++K  EI P+FP+FQ       +   D +                 + + +I
Sbjct: 175 KLKHPKNPNIKPVEITPIFPDFQRLGSSYTQCSYDGFPDPTVEDKSSSSNADLTKSTNSI 234

Query: 773 IIPGEDRY--GKNLFRLYVPNIESAKRLVKIKSFEDTKGETYQFKWVRDYNIDS 928
           + P ++ +   +     ++P   + ++L K K+ E  +  +Y ++WVRDY  +S
Sbjct: 235 LKPMQNPHDPSETFLAFFLPTESATEKLKKRKADELEEETSYDYEWVRDYTYES 288


>emb|CCG83123.1| RNA polymerase II-associated protein 1 homolog [Taphrina deformans
           PYCC 5710]
          Length = 398

 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 90/303 (29%), Positives = 126/303 (41%), Gaps = 12/303 (3%)
 Frame = +2

Query: 59  NYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGMKTEL 238
           +YI  ++Y +  P P   P  L   + L+  T         Q   + L  D +LGM  +L
Sbjct: 12  DYILRVRYSNTLPPPPFEPKLLKLPMSLSQYTSVSYLSTLIQEQPMKLELDKELGMPLDL 71

Query: 239 SDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPKEWLR 418
           S  PGLF GDE+ L    E    D  D+AL    K P       P            +LR
Sbjct: 72  SLLPGLFEGDESVLFAPSEPVELDPKDKALL---KGPSDTYSGKPM-------ADSAFLR 121

Query: 419 RTQYLDSEAVYKTNKTTTMESR-----MAALKANLDLVDQSHEEQIKAIDKTFEKANDPE 583
           RTQY+ SE + +TNK    E+       AALK  LD V     EQ+ A++KTFE    P 
Sbjct: 122 RTQYISSE-ITQTNKAKQQEAERAKKIKAALKIELDPV-----EQLAAVEKTFETVAQP- 174

Query: 584 FLSTLKHPANPSLKVKEIIPVFPEFQ--ESLRGQNKFDRDPWXXXXXXXXXXXXXXXXLR 757
            LS LKHPA   LK  E   V P F+  E      KF  +P                  R
Sbjct: 175 -LSELKHPAKRGLKAVEAWNVLPNFECYEHQYVNAKFPSNP---APRTKSNTVAEDEDPR 230

Query: 758 MSKAIIIP-----GEDRYGKNLFRLYVPNIESAKRLVKIKSFEDTKGETYQFKWVRDYNI 922
           +  + ++P       D    +    ++ + E+A  L +     D  G   ++K+VR+Y+ 
Sbjct: 231 LEVSCMVPRIVDDTIDAPDNDYISYFITDHETALSLKRKNMDGDGAGHQSRYKFVREYDA 290

Query: 923 DSD 931
             D
Sbjct: 291 KKD 293


>gb|ORY81602.1| RNA polymerase II-associated [Protomyces lactucaedebilis]
          Length = 306

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 74/306 (24%), Positives = 132/306 (43%), Gaps = 4/306 (1%)
 Frame = +2

Query: 59  NYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGMKTEL 238
           +Y+  ++Y++  P P   P  L+   D +  T        +Q   L + +D +LGM  +L
Sbjct: 11  DYVLRVRYQNTLPPPPFEPKMLALPTDFSKYTSASYLSNLYQEQPLRVEADSELGMHMDL 70

Query: 239 SDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPKEWLR 418
           S  PG+F G+E+ +         D  D+AL         ++ D+             +LR
Sbjct: 71  SLLPGIFEGEESAMYAPDVPEELDPKDRALLKTDIGQQKLSTDV------------SFLR 118

Query: 419 RTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPEFLSTL 598
           RTQY+ S+A          + + A  +A+L+       +QI AI+ TF  A+    L +L
Sbjct: 119 RTQYISSDAASAAKIKQAEKDKAARHQADLEFA-LDPLQQIAAIEDTFTAASGE--LESL 175

Query: 599 KHPANPSLKVKEIIPVFPEFQESLRGQ---NKFDRDPWXXXXXXXXXXXXXXXXLRMSKA 769
           +HP    L+  E+ PVFP+   S++ Q    KF  +P                 LR+  A
Sbjct: 176 RHPTRKDLRAVEVFPVFPD-TPSIQQQWCNAKFATNP---APRAKSNSKMDDTDLRLDVA 231

Query: 770 IIIPGE-DRYGKNLFRLYVPNIESAKRLVKIKSFEDTKGETYQFKWVRDYNIDSDTVMEN 946
            I+P   +    +    ++P+ E+A+++ +      +    ++   +RDY+   D     
Sbjct: 232 AILPKVIEEADDDYLSYFLPSYETAEQIRQANDRSTSADNVHRLDSIRDYDAKRD--QHE 289

Query: 947 QDLLFV 964
            D +FV
Sbjct: 290 DDYMFV 295


>gb|ORY42117.1| hypothetical protein LY90DRAFT_458322 [Neocallimastix californiae]
          Length = 391

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 77/320 (24%), Positives = 138/320 (43%), Gaps = 20/320 (6%)
 Frame = +2

Query: 62  YICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRL-------PLISDYDL 220
           ++C  ++++  P       +L +N  L     P     S+++S+L        L  D +L
Sbjct: 18  FMCRQRFQNTLP-------ELPFNPKLVEFPFPRDRLYSYKTSQLIENTPYKVLPPDNEL 70

Query: 221 GMKTELSDYPGLFLG-DEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRN 397
           G    L D      G D   +NP  E    D  D+ L       +   ++  R K+ S  
Sbjct: 71  GTSLNLIDMKVFEEGPDNKNINPT-EPAEIDEEDKIL-------LISNEEYERRKKRSVR 122

Query: 398 EPKEWLRRTQYLDSEAVYKTNKTTTMESRMA---ALKANLDLVDQSHEEQIKAIDKTFEK 568
               WLRRT+Y+ +EA  K       E +M    A    +   D S   QIK+I +TF+ 
Sbjct: 123 PQVSWLRRTEYISNEASNKFKNNEFSEVKMGLSIAKDTAIQSADLSVNGQIKSISRTFKI 182

Query: 569 ANDPEFLSTLKHPANPSLKVKEIIPVFPEFQE--SLRGQNKFDRDPWXXXXXXXXXXXXX 742
            N+ + L  +KHP    LK  EI PVFP+F    +     +++  P              
Sbjct: 183 INETD-LFNIKHPTKAYLKAVEIFPVFPDFVRWPNTYSHVQYNSSPLNNNSKETVEKLDE 241

Query: 743 XXXLRMSKAIIIPGEDRY--GKNLFRLYVPNIESAKRLVKIKSFEDTKGETY-----QFK 901
               ++S AI+ P ++     +     + P++E+AK+++  +  ED+  E +     ++ 
Sbjct: 242 VTSTQLSNAILKPMQNPLDPSETFLSYFQPSVETAKKIILKRKHEDSDDEEFDDEAQEYN 301

Query: 902 WVRDYNIDSDTVMENQDLLF 961
           +VRD+   ++T  +++ + F
Sbjct: 302 FVRDFEYVTNTESKSKKIFF 321


>ref|XP_020618250.1| RNA polymerase II-associated factor 1 homolog, partial [Orbicella
           faveolata]
          Length = 385

 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 13/304 (4%)
 Frame = +2

Query: 47  RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISD 211
           +ADF  +  +KY +  P    +P D  +   + Y  E + F +   +S     +  ++++
Sbjct: 27  KADF--VSRVKYNNNLPD---IPFDAKF---IAYPFESNRFVQYKPTSLEKNYKHEMLTE 78

Query: 212 YDLGMKTELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLS 391
            DLG+  +L D       D   L+P     S D +D+ L  + ++PV    +LP  KR +
Sbjct: 79  VDLGVNIDLID------PDTYALDPN---VSLDPDDEKL--LEEEPV----NLPDKKRTA 123

Query: 392 R-NEPKEWLRRTQYLDSEAVYKTNKTTTMESRMAA-LKANLDLVD--QSHEEQIKAIDKT 559
             N+   WLRRT+Y+ +E          +E+++   +K      D  + HE QI AI+ T
Sbjct: 124 HHNKNVSWLRRTEYISTEYNRSRTSNEMVETKVGFNVKKKFQGTDIYKDHESQIAAIEST 183

Query: 560 FEKANDPEFLSTLKHPANPSLKVKEIIPVFPEFQESLR--GQNKFDRDPWXXXXXXXXXX 733
           F+ A  P     L+HP  P++   E++PVFP+FQ          FD DP           
Sbjct: 184 FDAAQRP----ILRHPTKPNVTPVEVLPVFPDFQMWAHPCAHVIFDTDPTPRGRGGPAEE 239

Query: 734 XXXXXXLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKIKSFED--TKGETYQFKWV 907
                   MS+A+I    D  G      ++P  ++ ++  + +  E   T+ E Y++K  
Sbjct: 240 E------EMSQALIRGMVDASGDQFVAYFLPTTDTIRKRKRDQESEKEYTEEEEYEYKMA 293

Query: 908 RDYN 919
           R+YN
Sbjct: 294 REYN 297


>gb|ORX82210.1| hypothetical protein BCR32DRAFT_232106 [Anaeromyces robustus]
          Length = 416

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 16/321 (4%)
 Frame = +2

Query: 47  RADFNYICSLKYRH-IPPTPEHLPL-DLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDL 220
           R    ++C  ++++ +P  P +  L +  +  D  Y  +     E+     LP   D +L
Sbjct: 37  RPGSGFLCRQRFQNNLPELPFNPKLVEFPFPRDRLYSYKTSQLIENTPYKMLP--PDTEL 94

Query: 221 GMKTELSDYPGLFLGDE-AGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRN 397
           G+   L D      G E    NP       +  D  +  +  D      ++ R K+ S  
Sbjct: 95  GIPLNLIDMKVFEEGPENKTFNPTEPPPVHE--DDKILLISND------EIERRKKRSVR 146

Query: 398 EPKEWLRRTQYLDSEA---VYKTNKTTTMESRMAALKAN-LDLVDQSHEEQIKAIDKTFE 565
               WLRRT+Y+ +E      K N+ T ++  ++  K + +  VD S   QIK+I +TF+
Sbjct: 147 PQVSWLRRTEYISNEISNKFLKNNEFTEVKMGLSIAKDSAIKDVDLSVNGQIKSISRTFK 206

Query: 566 KANDPEFLSTLKHPANPSLKVKEIIPVFPEFQE--SLRGQNKFDRDPWXXXXXXXXXXXX 739
             N+ + L  +KHP    LK  EI P+FP+F    ++    +++  P             
Sbjct: 207 IINETD-LFNIKHPTKAHLKAVEIFPIFPDFVRWPNVYSHVQYNSSPISNEVKENLEKVD 265

Query: 740 XXXXLRMSKAIIIPGEDRY--GKNLFRLYVPNIESAKRLVKIKSFEDT-----KGETYQF 898
                ++S AI+ P ++     +     + P++E+AK++   +  ED+       ET ++
Sbjct: 266 EVTNTQLSNAILKPMQNPLDPSETFLSYFQPSVETAKKINLKRKHEDSDDEEIDNETQEY 325

Query: 899 KWVRDYNIDSDTVMENQDLLF 961
            +VRD+  D+    +N+ + F
Sbjct: 326 NFVRDFEYDTSNDSKNKKVFF 346


>dbj|GAA51648.1| RNA polymerase II-associated factor 1 homolog [Clonorchis sinensis]
          Length = 850

 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 15/300 (5%)
 Frame = +2

Query: 65   ICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGMK 229
            +C LKYR+  P    LP D  +   L Y  EP  F +   +S     +  L+++ D+G+ 
Sbjct: 339  LCRLKYRNTLP---ELPFDPKF---LAYPLEPSRFLQYVATSLERNYKHELLTETDVGVD 392

Query: 230  TELSDYPGLFLGDEA-GLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK 406
             +L D P +F  D++  L+P  E    D    A+                  R SR++  
Sbjct: 393  VDLID-PDVFKIDKSVKLHPDDERLLEDDTPAAINA----------------RKSRHQKS 435

Query: 407  -EWLRRTQYLDSEAVYKTNKTTTMESRMA-ALKANL--DLVDQSHEEQIKAIDKTFEKAN 574
              WLRRT+Y+ +E   + NK+  +ES++  ++K +L  ++V +  E QI AI+ TF  A 
Sbjct: 436  VSWLRRTEYISTEMYNRWNKSDKVESKLGYSVKRHLNEEIVYRDRESQIAAIEATFRAAK 495

Query: 575  DPEFLSTLKHPANPSLKVKEIIPVFPEFQ--ESLRGQNKFDRDPWXXXXXXXXXXXXXXX 748
             P      KH + P++   E++PV P+F        Q  FD DP                
Sbjct: 496  KP----ITKHYSKPNVHAVEVLPVLPDFTLWRYPCAQVIFDDDP------ARKNKSNAEQ 545

Query: 749  XLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKI---KSFEDTKGETYQFKWVRDYN 919
               +++A+I    D  G +    ++P  ES K+L ++        T+G  Y+++  R+YN
Sbjct: 546  KEEVNQAMIRGMVDESGDHFVAYFLPT-ESTKQLRRLDIENHVPYTEGAAYEYELAREYN 604


>gb|OON13566.1| Paf1, partial [Opisthorchis viverrini]
          Length = 546

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 15/300 (5%)
 Frame = +2

Query: 65  ICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGMK 229
           +C LKYR+  P    LP D  +   L Y  EP  F +   +S     +  L+++ D+G+ 
Sbjct: 71  LCRLKYRNTLP---ELPFDPKF---LAYPLEPSRFLQYVATSLERNYKHELLTETDVGVD 124

Query: 230 TELSDYPGLFLGDEA-GLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK 406
            +L D P +F  D++  L+P  E    D    A+                  R SR++  
Sbjct: 125 VDLID-PDVFKIDKSVKLHPDDERLLEDDTPAAINA----------------RKSRHQKS 167

Query: 407 -EWLRRTQYLDSEAVYKTNKTTTMESRMA-ALKANL--DLVDQSHEEQIKAIDKTFEKAN 574
             WLRRT+Y+ +E   + NK+  +ES++  ++K +L  ++V +  E QI AI+ TF  A 
Sbjct: 168 VSWLRRTEYISTEMYNRWNKSDKVESKLGYSVKRHLNEEIVYRDRESQIAAIEATFRAAK 227

Query: 575 DPEFLSTLKHPANPSLKVKEIIPVFPEFQ--ESLRGQNKFDRDPWXXXXXXXXXXXXXXX 748
            P      KH + P++   E++PV P+F        Q  FD DP                
Sbjct: 228 KP----ITKHYSKPNVHAVELLPVLPDFTLWRYPCAQVIFDDDP------ARKNKSNAEQ 277

Query: 749 XLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKI---KSFEDTKGETYQFKWVRDYN 919
              +++A+I    D  G +    ++P  ES K+L ++        T+G  Y+++  R+YN
Sbjct: 278 KEEVNQAMIRGMVDESGDHFVAYFLPT-ESTKQLRRLDIENHVPYTEGAAYEYELAREYN 336


>ref|XP_018734393.1| Paf1p [Sugiyamaella lignohabitans]
 gb|ANB11916.1| Paf1p [Sugiyamaella lignohabitans]
          Length = 410

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 14/303 (4%)
 Frame = +2

Query: 59  NYICSLKYRHIPPTPEHLPLDLSWNVDLNYL-TEPDSFFESFQSSRLPLISDYDLGMKTE 235
           +YI  ++Y++  P P   P  L+  +D + L + P       +   + +  D DLGM  +
Sbjct: 6   DYIARIRYQNDLPPPPCPPKLLNIPLDTSKLASSPAVLTNLVRKQPINVDIDIDLGMPLD 65

Query: 236 LSDYPGLF-LGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK-E 409
           L++  G+F  GDEAG+ P     S D  D     + ++P  +T        +S+ +P   
Sbjct: 66  LTEVQGIFDRGDEAGIYPSSTAPSVDRLDPKDRALLRNPKGITS-------VSKTQPGVS 118

Query: 410 WLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPEFL 589
           +LRRT+Y+ SEAV +++ +    +  A L+     V    EEQ++ ++ TF+ +   E L
Sbjct: 119 FLRRTEYISSEAVRQSSDSPLRST--ALLRQKRLSVVSGPEEQLRIVENTFDAS--AEDL 174

Query: 590 STLKHPANPSLKVKEIIPVFPEFQESLRGQNKFDRDPWXXXXXXXXXXXXXXXXL---RM 760
           S LKHP   +LK  E   +FP+          FD                         +
Sbjct: 175 SKLKHPKKKNLKAVESWQLFPD-------SKMFDLQYLSVKLVGSASLSSSKRKFAPESL 227

Query: 761 SKAIIIPGEDRYGKNLFRLYVPNIESAKRL-VKIKSFEDT-------KGETYQFKWVRDY 916
             AI        G+    LY  + E+ K+L  ++ S EDT         ++Y+F  V+D 
Sbjct: 228 ETAIFRQNSASNGEEWMSLYTADEETGKKLKSRLDSTEDTVVDDEEDDDQSYRFTRVQDN 287

Query: 917 NID 925
           +ID
Sbjct: 288 DID 290


>emb|CAX73210.1| Putative DNA helicase INO80 [Schistosoma japonicum]
          Length = 497

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 79/299 (26%), Positives = 135/299 (45%), Gaps = 14/299 (4%)
 Frame = +2

Query: 65  ICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGMK 229
           +C LKY++  P    LP D  + V   Y  EP  F +   +S     +  L+++ D+G++
Sbjct: 30  LCRLKYQNNLP---ELPFDPKFLV---YPLEPSRFLQYVATSLERNYKHELLTETDVGVE 83

Query: 230 TELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK- 406
            +L D     +  +A L+P  E     + D+A       P  V        R SR++   
Sbjct: 84  VDLIDPDVFRIDKKATLHPDDERL---LEDEA-------PTFVNA------RKSRHQKSV 127

Query: 407 EWLRRTQYLDSEAVYKTNKTTTMESRM---AALKANLDLVDQSHEEQIKAIDKTFEKAND 577
            WLR+T+Y+ +E   + NK+  +ESR+        N ++V +  E QI AI++TF  A  
Sbjct: 128 SWLRKTEYISTELYNRWNKSEKVESRLGYNVKRHLNEEIVYRDRESQINAIEETFNAARK 187

Query: 578 PEFLSTLKHPANPSLKVKEIIPVFPEFQ--ESLRGQNKFDRDPWXXXXXXXXXXXXXXXX 751
           P      KH + P++   E++PV P+F        Q  FD DP                 
Sbjct: 188 P----IHKHYSKPNVHALEVLPVLPDFTLWRYPCAQVIFDDDP------SRKNKTTTEQK 237

Query: 752 LRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKIKS---FEDTKGETYQFKWVRDYN 919
             +++A+I    D  G +    ++P  E  K+L ++ +      T+G  Y+++  R+YN
Sbjct: 238 EEVNQAMIRGMVDESGDHFVAYFLPT-EQTKQLRRLDAENRLPYTEGAAYEYELTREYN 295


>ref|XP_504253.1| YALI0E22022p [Yarrowia lipolytica CLIB122]
 emb|CAG79848.1| YALI0E22022p [Yarrowia lipolytica CLIB122]
 gb|AOW05777.1| hypothetical protein YALI1_E25999g [Yarrowia lipolytica]
 emb|SEI33580.1| YALIA101S03e21836g1_1 [Yarrowia lipolytica]
          Length = 386

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 4/205 (1%)
 Frame = +2

Query: 59  NYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPD-SFFESFQSSRLPLIS-DYDLGMKT 232
           +Y+  ++Y++  P PE  P  L+  V    LT    +     Q    P I+ D DLGM  
Sbjct: 6   DYLVRVRYQNELPPPELPPKMLNIPVPPEKLTSLGINILSDMQRRESPQINVDNDLGMPL 65

Query: 233 ELSDYPGLF-LGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK- 406
           +L++  G+F   DE+GL P   +   D  D  L    K+P +           ++++P  
Sbjct: 66  DLTEIRGVFEQDDESGLLPLENLPELDPRDLVLL---KEPQSTG---------NKSQPGV 113

Query: 407 EWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPEF 586
            +LRRT+Y+ SE        T   S+    +  L+   Q  E Q++A++ TFE AN    
Sbjct: 114 AFLRRTEYISSEVSGGRKLETLSASQRRLAQKTLEESFQDPESQLRAVEATFEAANTD-- 171

Query: 587 LSTLKHPANPSLKVKEIIPVFPEFQ 661
           + TLKHP  P L   E  P+ P  Q
Sbjct: 172 IKTLKHPKKPHLTAVESFPILPNSQ 196


>ref|XP_002737978.2| PREDICTED: RNA polymerase II-associated factor 1 homolog
           [Saccoglossus kowalevskii]
          Length = 501

 Score = 74.7 bits (182), Expect = 4e-11
 Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 14/299 (4%)
 Frame = +2

Query: 65  ICSLKY-RHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGM 226
           +C +KY  H+P     +P D  +   + Y  EP+ F +   +S     +  L++++DLG+
Sbjct: 28  VCRVKYCNHLPD----IPFDPKF---ITYPFEPNRFVQYNATSLERSYKHELLTEHDLGV 80

Query: 227 KTELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK 406
             +L + P  +  D + +         D  D+ L    ++ ++   D  R ++ ++  P 
Sbjct: 81  TIDLIN-PDTYSQDPSVI--------IDPADERLL---EEEISTPGDSKRSRQHAK--PV 126

Query: 407 EWLRRTQYLDSEAVYKTNKTTTMESRMAA-LKANL--DLVDQSHEEQIKAIDKTFEKAND 577
            WLR+T+Y+ +E    T+ +   E+++ A L+     D + +  E QI AIDKTF+ A  
Sbjct: 127 SWLRKTEYISTEYNRFTHSSDKAETKVGANLRKQFAEDYLYKDRESQISAIDKTFDTAKV 186

Query: 578 PEFLSTLKHPANPSLKVKEIIPVFPEFQESLR---GQNKFDRDPWXXXXXXXXXXXXXXX 748
           P      +H + P++   +++PVFP+F  ++     Q  FD DP                
Sbjct: 187 P----ITEHYSKPNVTAVDVLPVFPDFNVTMDHPCAQVIFDSDP------SVSGKQMALQ 236

Query: 749 XLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVK--IKSFEDTKGETYQFKWVRDYN 919
              MS+A+I    D   +     ++PN E+ ++  +   +  + T  E Y++K  R+YN
Sbjct: 237 MEEMSQAMIRGMVDESDEQFVGYFLPNEETRQKRKRDVEEGIDYTPEEEYEYKMAREYN 295


>ref|XP_019044737.1| RNA polymerase II-associated factor 1 [Kwoniella bestiolae CBS
           10118]
 gb|OCF23667.1| RNA polymerase II-associated factor 1 [Kwoniella bestiolae CBS
           10118]
          Length = 451

 Score = 73.6 bits (179), Expect = 8e-11
 Identities = 69/262 (26%), Positives = 104/262 (39%), Gaps = 3/262 (1%)
 Frame = +2

Query: 74  LKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGMKTELSDYPG 253
           ++Y +  P P   P  L+ + D+N L EP        S++LP++ D ++GM  +LS Y G
Sbjct: 11  VRYLNPVPNPPFPPKLLNVSTDINRLGEPSYLNHLAASTQLPMLVDSEMGMPLDLSTYEG 70

Query: 254 LFLGDEAGLNPRREITSFDIN-DQALFCVGKDPVTVTQDLPRLKRLSRNEPKEWLRRTQY 430
           ++ G +  LNP  +        D AL      P  V  D+    + +      W+R   Y
Sbjct: 71  IWDGQDQSLNPTPDAGRVHHPIDVALLAPFNPPAEVNGDV----KPAVTTEVSWMRNNNY 126

Query: 431 LDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPEFLSTLKHP- 607
           L       T K        A  KA  ++VD S   QI AI+KTF    D +    +KHP 
Sbjct: 127 L-------TRKNNARRKEAAEAKAE-EVVDASEAAQIMAIEKTFHDLYDQD-PKEIKHPD 177

Query: 608 -ANPSLKVKEIIPVFPEFQESLRGQNKFDRDPWXXXXXXXXXXXXXXXXLRMSKAIIIPG 784
                L V E   + P+   S        R P                  R++KAI+ P 
Sbjct: 178 KKKKGLTVVESYDILPD-MHSWENSYALVRFPERPSAATVINPAATASSPRLAKAILRPI 236

Query: 785 EDRYGKNLFRLYVPNIESAKRL 850
            +   + +   Y+P  E    L
Sbjct: 237 REDEDQQMIEFYLPKEEDLTNL 258


>gb|ORY35540.1| RNA polymerase II-associated [Naematelia encephala]
          Length = 436

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 66/274 (24%), Positives = 115/274 (41%), Gaps = 3/274 (1%)
 Frame = +2

Query: 47  RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGM 226
           ++  + +  ++Y +  P P   P     + D+  L EP        S+ LP++ D ++GM
Sbjct: 4   KSKLDLLVRVRYLNPLPPPPFPPKLFKISTDIERLGEPSYLNHLAASTPLPMLVDSEMGM 63

Query: 227 KTELSDYPGLFLGDEAGLNP-RREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEP 403
             +L+ YPG++ GD++ LNP  R+   +D  D  L      P+  +       + S    
Sbjct: 64  PLDLNAYPGVWDGDDSALNPIMRDDIKYDPVDLELLA----PLQASSTTNAATKASSAAE 119

Query: 404 KEWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDLVDQSHEEQIKAIDKTFEKANDPE 583
             W+R +          T KT       A  +    +VD S   QI AID+TF    + +
Sbjct: 120 VSWMRNSNLF-------TRKTAARRREAAEGEKKEAVVDASEAAQIMAIDQTFRDVREQD 172

Query: 584 FLSTLKHPANPS--LKVKEIIPVFPEFQESLRGQNKFDRDPWXXXXXXXXXXXXXXXXLR 757
            LS L+HP +    L+V E   + P+  ES        R P                  R
Sbjct: 173 -LSELRHPDSKKRHLRVVESYDILPD-DESWSNPYIMIRFPERPSAATAINPSASASDGR 230

Query: 758 MSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKI 859
           +++++I P  D   + +   Y+P  E  ++L ++
Sbjct: 231 LARSVIRPIRDE-DQQVMEFYLPREEDLEKLDEV 263


>gb|KZT07427.1| hypothetical protein LAESUDRAFT_724896 [Laetiporus sulphureus
           93-53]
          Length = 437

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 68/216 (31%), Positives = 98/216 (45%), Gaps = 13/216 (6%)
 Frame = +2

Query: 47  RADFNYICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGM 226
           ++  + I  ++Y +  P P   P  L    D      P+   +    + LP+I D DLGM
Sbjct: 5   KSKLDLIIRVRYSNPLPAPPCPPKILDMPTDPMRYARPEFLDDIAADTPLPMIVDGDLGM 64

Query: 227 KTELSDYPGLF--LGDEAGLNPRREIT-SFDINDQALFCVGKDPVTV---------TQDL 370
             +LS +  L+   GD++GLNP    T   D  DQ L     DP T           Q +
Sbjct: 65  PLDLSRWECLWEENGDDSGLNPDPNNTPPLDPKDQLLL---GDPSTSGPYMSTLFGAQGI 121

Query: 371 PRLKRLSRNEPKEWLRRTQYLDSEAVYKTNKTTTMESRMAALKANLDL-VDQSHEEQIKA 547
                LS      WLR+T+YL  E V     T +M S+    K N+D+ VD S   QI+ 
Sbjct: 122 SASATLSSMPHVPWLRKTEYLSREGV-----TRSMLSQEP--KRNMDVPVDISRSAQIRD 174

Query: 548 IDKTFEKANDPEFLSTLKHPANPSLKVKEIIPVFPE 655
           I+ +F    D + L+TLKHP  P +   E   +FP+
Sbjct: 175 IESSFTATEDFD-LTTLKHPNKPDVTAVESYEIFPD 209


>ref|XP_022788023.1| RNA polymerase II-associated factor 1 homolog [Stylophora
           pistillata]
 gb|PFX27167.1| RNA polymerase II-associated factor 1-like [Stylophora pistillata]
          Length = 460

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 8/248 (3%)
 Frame = +2

Query: 200 LISDYDLGMKTELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRL 379
           ++++ DLG+  +L D P  +  D           S D +D+ L  + ++PV    +LP  
Sbjct: 75  MLTEVDLGVNIDLID-PDTYAIDHN--------VSLDHDDEKL--LEEEPV----NLPDK 119

Query: 380 KRLSR-NEPKEWLRRTQYLDSEAVYKTNKTTTMESRMAA-LKANLDLVD--QSHEEQIKA 547
           KR +  N+   WLRRT+Y+ +E          +E+++   +K      D  +  E QI A
Sbjct: 120 KRTAHHNKNVSWLRRTEYISTEYNRSRTSNEMVETKVGFNVKKKFQGTDIYKDRESQIAA 179

Query: 548 IDKTFEKANDPEFLSTLKHPANPSLKVKEIIPVFPEFQESLR--GQNKFDRDPWXXXXXX 721
           I+ TF+ A  P     L+HP  P +   E++PVFP+FQ   +      FD DP       
Sbjct: 180 IESTFDAAQRP----ILRHPTKPGVTPLEVLPVFPDFQMWAQPCAHVIFDTDPTPRGRGG 235

Query: 722 XXXXXXXXXXLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVKIKSFED--TKGETYQ 895
                       MS+A+I    D  G      ++P+ E+ ++  + +  E   T+ E Y+
Sbjct: 236 PAEDE------EMSQAMIRGMVDASGDQFVAYFLPSKETIRKRKRDQEGETEYTEEEEYE 289

Query: 896 FKWVRDYN 919
           +K  R+YN
Sbjct: 290 YKMAREYN 297


>ref|XP_014252209.2| RNA polymerase II-associated factor 1 homolog isoform X2 [Cimex
           lectularius]
          Length = 800

 Score = 73.6 bits (179), Expect = 1e-10
 Identities = 74/299 (24%), Positives = 134/299 (44%), Gaps = 13/299 (4%)
 Frame = +2

Query: 62  YICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGM 226
           +IC +KY +  P    +P D  +   + Y  E   F +   +S     +  +++++DLG+
Sbjct: 28  FICRVKYCNTLPD---IPFDPKF---ITYPFESTRFIQYNPTSLERNYKYEVLTEHDLGV 81

Query: 227 KTELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPK 406
             +L +        +A L+P          D+ L    ++ V    D  R +  SR+   
Sbjct: 82  TIDLINKDMYLADPDAVLDPA---------DERLL---EEDVLTLHDSKRSRHHSRSV-- 127

Query: 407 EWLRRTQYLDSEAV-YKTNKTTTMESRMA-ALKANL--DLVDQSHEEQIKAIDKTFEKAN 574
            WLRRT+Y+ +E   Y+      +E+++  ++K +L  D +    + QIKAI+KTF  A 
Sbjct: 128 SWLRRTEYISTEQTRYQPQTMDKVEAKVGYSIKKSLKEDTLSMDRDSQIKAIEKTFTDAK 187

Query: 575 DPEFLSTLKHPANPSLKVKEIIPVFPEFQ--ESLRGQNKFDRDPWXXXXXXXXXXXXXXX 748
            P      KH + P++   E++P+FP+F+  +    Q  FD DP                
Sbjct: 188 TP----IEKHYSKPNVTAVEVLPLFPDFKLWKYPCAQVMFDSDP------APVGMSVPAQ 237

Query: 749 XLRMSKAIIIPGEDRYGKNLFRLYVPNIESAKRLVK--IKSFEDTKGETYQFKWVRDYN 919
              MS+A+I    D  G+     ++P  E+ ++  +      +    E Y++K  R+YN
Sbjct: 238 LEEMSQAVIRGVMDESGEQFVAYFLPTAETLEKRRRDFASGIDYEDDEEYEYKIAREYN 296


>ref|XP_014677153.1| PREDICTED: RNA polymerase II-associated factor 1 homolog [Priapulus
           caudatus]
          Length = 503

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 7/284 (2%)
 Frame = +2

Query: 89  IPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSSRLPLISDYDLGMKTELSDYPGLFLGD 268
           IP  P+ +      N  + Y   P S   +++     L++++DLG+  +L D P  +   
Sbjct: 25  IPFDPKFITYPFESNRFVQY--NPTSLERNYKHD---LLTEHDLGVNIDLID-PDTY--- 75

Query: 269 EAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPKEWLRRTQYLDSEAV 448
                   ++   D+ D A   + ++ V   QD  R ++ S+     W+R+T+Y+ +E  
Sbjct: 76  --------KVDYNDVLDPADEKLLEEDVATPQDSKRSRQHSKTV--SWMRKTEYISTEYN 125

Query: 449 YKTNKTTTMESRMA---ALKANLDLVDQSHEEQIKAIDKTFEKANDPEFLSTLKHPANPS 619
             T      E+++      K   D + +  E Q++AIDK+FE+AN+P      KH + P 
Sbjct: 126 RFTPSAEKAEAKIGYSVRKKFKEDDMYKDRESQLQAIDKSFEQANEP----IAKHYSKPG 181

Query: 620 LKVKEIIPVFPEFQESLR--GQNKFDRDPWXXXXXXXXXXXXXXXXLRMSKAIIIPGEDR 793
           +   E++P+FP+F   +    Q  FDRDP                   MS+A+I    D 
Sbjct: 182 VTPVEVLPLFPDFNGWIHPCAQVIFDRDP------APQGISQPAQLEEMSQALIRGMMDE 235

Query: 794 YGKNLFRLYVPNIESAKRLVK--IKSFEDTKGETYQFKWVRDYN 919
            G      ++P  E+ K+  +   +S E    E Y +   R YN
Sbjct: 236 EGNQFVAYFLPTEETLKKRKRDQEESIEYNDEEVYDYTIARSYN 279


>gb|PIK44088.1| putative RNA polymerase II-associated factor 1-like [Apostichopus
           japonicus]
          Length = 296

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
 Frame = +2

Query: 65  ICSLKYRHIPPTPEHLPLDLSWNVDLNYLTEPDSFFESFQSS-----RLPLISDYDLGMK 229
           +C +KY +  P    +P D  +   + Y  +P+ F E   +S     +  L+++ DLG+ 
Sbjct: 28  VCRIKYLNQLPD---IPFDPKF---IRYPFDPNRFVEYNATSLERNYKHELLAEQDLGVT 81

Query: 230 TELSDYPGLFLGDEAGLNPRREITSFDINDQALFCVGKDPVTVTQDLPRLKRLSRNEPKE 409
            +L +     +   A L+P+         D+ L    ++ ++   D  R +R +RN    
Sbjct: 82  IDLINPETYRIDPNAVLDPK---------DEKLL---EEEISTPGDSKRSQRHARNV--S 127

Query: 410 WLRRTQYLDSEAVYKTNKTTTMESRMAAL---KANLDLVDQSHEEQIKAIDKTFEKANDP 580
           WLR+T+Y+ SE           E+++A     K N + V Q    QIKAI KTFE A  P
Sbjct: 128 WLRKTEYISSEYSRSQPSAEKPETKVAYTLKKKFNEEDVYQDRSNQIKAIQKTFEDAKKP 187

Query: 581 EFLSTLKHPANPSLKVKEIIPVFPEFQESLR--GQNKFDRDP 700
                 KH + P +   EI+PVFP+F+  +    Q  FD DP
Sbjct: 188 ----IEKHYSKPFVTPVEILPVFPDFETWIHPCAQVNFDSDP 225