BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00042325
         (364 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PSK47576.1| DNA-directed RNA polymerase II subunit RPB1 [[Can...    68   1e-10
gb|PIS56106.1| DNA-directed RNA polymerase II subunit RPB1 [[Can...    68   1e-10
gb|PSK76455.1| DNA-directed RNA polymerase II subunit RPB1 [[Can...    65   7e-10

>gb|PSK47576.1| DNA-directed RNA polymerase II subunit RPB1 [[Candida] auris]
          Length = 1688

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
 Frame = -2

Query: 303  SL*TASNKSYLFADKSIIFS*FTKLLTDISKLHSNITKLYPNITKIFTYLTKLFTYFAKL 124
            SL +   +  LF + + +F+  T LLT+I+KL +NIT L  NI K+F  +T LFT FAKL
Sbjct: 1510 SLTSYGGQPSLFTNLAKLFANITILLTNIAKLFANITILLTNIAKLFANITILFTNFAKL 1569

Query: 123  FSDIA*LYTDXXXXXXXXXXXST-LFTNITNLLTDFSKLFT 4
             ++ A ++T+              LFTN T LL +F+KLFT
Sbjct: 1570 LTNFAIIFTNFSKLLAYLLPNFAKLFTNFTKLLPNFTKLFT 1610



 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
 Frame = -2

Query: 288  SNKSYLFADKSIIFS*FTKLLT----DISKLHSNITKLYPNITKIFTYLTKLF------- 142
            +N + L  + +IIF+ F+KLL     + +KL +N TKL PN TK+FTY  KL        
Sbjct: 1564 TNFAKLLTNFAIIFTNFSKLLAYLLPNFAKLFTNFTKLLPNFTKLFTYFAKLLSYITIIL 1623

Query: 141  TYFAKLFSDIA*LYTDXXXXXXXXXXXSTLFTNITNLLTDFSKLFTN 1
            TYF  +F+++A + T            +T+  N+ ++L + S +F N
Sbjct: 1624 TYFTTIFANVAAILT----------YVATILANVASVLANVSAVFAN 1660


>gb|PIS56106.1| DNA-directed RNA polymerase II subunit RPB1 [[Candida] auris]
          Length = 1707

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = -2

Query: 279  SYLFADKSIIFS*FTKLLTDISKLHSNITKLYPNITKIFTYLTKLFTYFAKLFSDIA*LY 100
            S L +  SI+ + F KL T+++KL +NIT L  NI K+F  +T LFT FAKL ++ A ++
Sbjct: 1537 SKLLSYVSIVLTNFAKLFTNLAKLFANITILLTNIAKLFANITILFTNFAKLLTNFAIIF 1596

Query: 99   TDXXXXXXXXXXXST-LFTNITNLLTDFSKLFT 4
            T+              LFTN T LL +F+KLFT
Sbjct: 1597 TNFSKLLAYLLPNFAKLFTNFTKLLPNFTKLFT 1629



 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
 Frame = -2

Query: 288  SNKSYLFADKSIIFS*FTKLLT----DISKLHSNITKLYPNITKIFTYLTKLF------- 142
            +N + L  + +IIF+ F+KLL     + +KL +N TKL PN TK+FTY  KL        
Sbjct: 1583 TNFAKLLTNFAIIFTNFSKLLAYLLPNFAKLFTNFTKLLPNFTKLFTYFAKLLSYITIIL 1642

Query: 141  TYFAKLFSDIA*LYTDXXXXXXXXXXXSTLFTNITNLLTDFSKLFTN 1
            TYF  +F+++A + T            +T+  N+ ++L + S +F N
Sbjct: 1643 TYFTTIFANVAAILT----------YVATILANVASVLANVSAVFAN 1679


>gb|PSK76455.1| DNA-directed RNA polymerase II subunit RPB1 [[Candida] auris]
          Length = 1714

 Score = 65.5 bits (158), Expect = 7e-10
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -2

Query: 279  SYLFADKSIIFS*FTKLLTDISKLHSNITKLYPNITKIFTYLTKLFTYFAKLFSDIA*LY 100
            S L +  SI+ + F KL T+++KL +NIT L  NI K+F  +T LFT FAKL ++ A ++
Sbjct: 1537 SKLLSYVSIVLTNFAKLFTNLAKLFANITILLTNIAKLFANITILFTNFAKLLTNFAIIF 1596

Query: 99   TDXXXXXXXXXXXST-LFTNITNLLTDFSKLFTN 1
            T+              LFTN T LL +F+KL  N
Sbjct: 1597 TNFSKLLAYLLPNFAKLFTNFTKLLPNFTKLLPN 1630



 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 29/93 (31%), Positives = 53/93 (56%)
 Frame = -2

Query: 279  SYLFADKSIIFS*FTKLLTDISKLHSNITKLYPNITKIFTYLTKLFTYFAKLFSDIA*LY 100
            +YL  + + +F+ FTKLL + +KL  N TKL+    K+ +Y+T + TYF  +F+++A + 
Sbjct: 1604 AYLLPNFAKLFTNFTKLLPNFTKLLPNFTKLFTYFAKLLSYITIILTYFTTVFANVAAIL 1663

Query: 99   TDXXXXXXXXXXXSTLFTNITNLLTDFSKLFTN 1
            T            +T+  N+ ++L + S +F N
Sbjct: 1664 T----------YVATILANVASILANVSAVFAN 1686



 Score = 53.9 bits (128), Expect = 8e-06
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
 Frame = -2

Query: 288  SNKSYLFADKSIIFS*FTKLLTDISKLHSNITKLYPNITKIFTYLTKLFTYFAKLFS--- 118
            +N + LF + + +F+  T LLT+I+KL +NIT L+ N  K+ T    +FT F+KL +   
Sbjct: 1548 TNFAKLFTNLAKLFANITILLTNIAKLFANITILFTNFAKLLTNFAIIFTNFSKLLAYLL 1607

Query: 117  -DIA*LYTDXXXXXXXXXXXSTLFTNITNLLTDFSKLFT 4
             + A L+T+           + L  N T LL +F+KLFT
Sbjct: 1608 PNFAKLFTN----------FTKLLPNFTKLLPNFTKLFT 1636