BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00039961
         (444 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKC08459.1| RNA polymerase Rpb6 [Rhizophagus irregularis] >gi...   190   5e-60
gb|EXX52603.1| Rpo26p [Rhizophagus irregularis DAOM 197198w]          191   2e-59
gb|EXX52602.1| Rpo26p [Rhizophagus irregularis DAOM 197198w] >gi...   191   2e-59
gb|EXX79219.1| Rpo26p [Rhizophagus irregularis DAOM 197198w]          132   1e-37
ref|XP_016293924.1| putative subunit common to RNA polymerase I,...   134   2e-37
ref|XP_011390784.1| putative DNA-directed RNA polymerase core su...   134   2e-37
ref|XP_012193392.1| potential subunit common to RNA polymerase I...   134   2e-37
gb|ETS64458.1| hypothetical protein PaG_00915 [Moesziomyces aphi...   133   3e-37
ref|XP_017991525.1| rpo26-18kd subunit of dna-directed rna polym...   133   3e-37
emb|SJX64497.1| probable Rpo26-18kD subunit of DNA-directed RNA ...   133   4e-37
emb|CBQ68854.1| probable Rpo26-18kD subunit of DNA-directed RNA ...   133   4e-37
emb|CCF50844.1| probable Rpo26-18kD subunit of DNA-directed RNA ...   132   5e-37
ref|XP_016269608.1| DNA-directed RNA polymerases I, II, and III ...   132   5e-37
emb|CDS01585.1| hypothetical protein [Sporisorium scitamineum] >...   132   7e-37
emb|SHO78986.1| RNA polymerase subunit ABC23 [Malassezia sympodi...   132   1e-36
ref|XP_014653698.1| DNA-directed RNA Polymerase II subunit F [Mo...   133   1e-36
emb|SAM84112.1| probable Rpo26-18kD subunit of DNA-directed RNA ...   131   1e-36
gb|PRQ77353.1| RNA polymerase, subunit omega/K/RPB6 [Rhodotorula...   132   2e-36
gb|KWU41615.1| RNA polymerase Rpb6 [Rhodotorula sp. JG-1b]            128   8e-36
ref|XP_014182524.1| DNA-directed RNA polymerases I, II, and III ...   129   8e-36

>gb|PKC08459.1| RNA polymerase Rpb6 [Rhizophagus irregularis]
 gb|PKC74312.1| RNA polymerase Rpb6 [Rhizophagus irregularis]
 gb|PKK76253.1| RNA polymerase Rpb6 [Rhizophagus irregularis]
 gb|PKY22067.1| RNA polymerase Rpb6 [Rhizophagus irregularis]
 gb|PKY37370.1| RNA polymerase Rpb6 [Rhizophagus irregularis]
 gb|POG78082.1| RNA polymerase, subunit omega/K/RPB6 [Rhizophagus irregularis DAOM
           181602=DAOM 197198]
          Length = 109

 Score =  190 bits (482), Expect = 5e-60
 Identities = 95/111 (85%), Positives = 100/111 (90%)
 Frame = -3

Query: 439 VDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELR 260
           +D NK   VEKE+VTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELR
Sbjct: 1   MDVNKQVTVEKEKVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELR 60

Query: 259 FKKIPLMIRRYLPDGSYEDWNVRELTIPEDEDYGRQPNPVQGQTQLSQPSQ 107
           FKKIPLMIRRYLPDGS+EDWNVR+L IPEDEDYGR  NP QGQ+  SQP Q
Sbjct: 61  FKKIPLMIRRYLPDGSFEDWNVRDLIIPEDEDYGRTTNPGQGQS--SQPLQ 109


>gb|EXX52603.1| Rpo26p [Rhizophagus irregularis DAOM 197198w]
          Length = 177

 Score =  191 bits (484), Expect = 2e-59
 Identities = 95/112 (84%), Positives = 101/112 (90%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           ++D NK   VEKE+VTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL
Sbjct: 68  EMDVNKQVTVEKEKVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 127

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPEDEDYGRQPNPVQGQTQLSQPSQ 107
           RFKKIPLMIRRYLPDGS+EDWNVR+L IPEDEDYGR  NP QGQ+  SQP Q
Sbjct: 128 RFKKIPLMIRRYLPDGSFEDWNVRDLIIPEDEDYGRTTNPGQGQS--SQPLQ 177


>gb|EXX52602.1| Rpo26p [Rhizophagus irregularis DAOM 197198w]
 dbj|GBC28281.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
           [Rhizophagus irregularis DAOM 181602]
          Length = 178

 Score =  191 bits (484), Expect = 2e-59
 Identities = 95/112 (84%), Positives = 101/112 (90%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           ++D NK   VEKE+VTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL
Sbjct: 69  EMDVNKQVTVEKEKVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 128

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPEDEDYGRQPNPVQGQTQLSQPSQ 107
           RFKKIPLMIRRYLPDGS+EDWNVR+L IPEDEDYGR  NP QGQ+  SQP Q
Sbjct: 129 RFKKIPLMIRRYLPDGSFEDWNVRDLIIPEDEDYGRTTNPGQGQS--SQPLQ 178


>gb|EXX79219.1| Rpo26p [Rhizophagus irregularis DAOM 197198w]
          Length = 73

 Score =  132 bits (332), Expect = 1e-37
 Identities = 65/75 (86%), Positives = 68/75 (90%)
 Frame = -3

Query: 331 MNAPILVPRENETDPLEIAKKELRFKKIPLMIRRYLPDGSYEDWNVRELTIPEDEDYGRQ 152
           MNAPILVPRENETDPLEIAKKELRFKKIPLMIRRYLPDGS+EDWNVR+L IPEDEDYGR 
Sbjct: 1   MNAPILVPRENETDPLEIAKKELRFKKIPLMIRRYLPDGSFEDWNVRDLIIPEDEDYGRT 60

Query: 151 PNPVQGQTQLSQPSQ 107
            NP QGQ+  SQP Q
Sbjct: 61  TNPGQGQS--SQPLQ 73


>ref|XP_016293924.1| putative subunit common to RNA polymerase I, II and III
           [Kalmanozyma brasiliensis GHG001]
 gb|EST08935.1| putative subunit common to RNA polymerase I, II and III
           [Kalmanozyma brasiliensis GHG001]
          Length = 137

 Score =  134 bits (336), Expect = 2e-37
 Identities = 64/90 (71%), Positives = 72/90 (80%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D  ++       ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 48  DPSTSMAGQANAERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 107

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL + E
Sbjct: 108 AAKKIPLVVRRYLPDGSYEDWTVSELIVSE 137


>ref|XP_011390784.1| putative DNA-directed RNA polymerase core subunit RPB6 [Ustilago
           maydis 521]
 gb|KIS67795.1| putative DNA-directed RNA polymerase core subunit RPB6 [Ustilago
           maydis 521]
          Length = 138

 Score =  134 bits (336), Expect = 2e-37
 Identities = 64/90 (71%), Positives = 72/90 (80%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D  ++       ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 49  DPSTSMAGQANAERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 108

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL + E
Sbjct: 109 AAKKIPLVVRRYLPDGSYEDWTVSELIVSE 138


>ref|XP_012193392.1| potential subunit common to RNA polymerase I, II and III
           [Pseudozyma hubeiensis SY62]
 dbj|GAC99805.1| potential subunit common to RNA polymerase I, II and III
           [Pseudozyma hubeiensis SY62]
          Length = 138

 Score =  134 bits (336), Expect = 2e-37
 Identities = 64/90 (71%), Positives = 72/90 (80%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D  ++       ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 49  DPSTSMAGQANAERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 108

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL + E
Sbjct: 109 AAKKIPLVVRRYLPDGSYEDWTVSELIVSE 138


>gb|ETS64458.1| hypothetical protein PaG_00915 [Moesziomyces aphidis DSM 70725]
          Length = 138

 Score =  133 bits (335), Expect = 3e-37
 Identities = 63/90 (70%), Positives = 73/90 (81%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D  ++      ++R+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 49  DPSTSMAGQANQDRITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 108

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL + E
Sbjct: 109 AAKKIPLVVRRYLPDGSYEDWTVSELIVTE 138


>ref|XP_017991525.1| rpo26-18kd subunit of dna-directed rna polymerases iii [Malassezia
           pachydermatis]
 gb|KOS13893.1| rpo26-18kd subunit of dna-directed rna polymerases iii [Malassezia
           pachydermatis]
          Length = 146

 Score =  133 bits (335), Expect = 3e-37
 Identities = 64/88 (72%), Positives = 73/88 (82%)
 Frame = -3

Query: 436 DSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRF 257
           D+N      KER+TTPYMTKYEKARILGTRALQISMNAP+LVP E E DPL IA+KEL  
Sbjct: 59  DTNAHGEPNKERITTPYMTKYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELVA 118

Query: 256 KKIPLMIRRYLPDGSYEDWNVRELTIPE 173
           KKIPL++RRYLPDGS+EDW+V EL + E
Sbjct: 119 KKIPLLVRRYLPDGSFEDWSVSELIVTE 146


>emb|SJX64497.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
           III [Sporisorium reilianum f. sp. reilianum]
          Length = 138

 Score =  133 bits (334), Expect = 4e-37
 Identities = 63/78 (80%), Positives = 69/78 (88%)
 Frame = -3

Query: 406 ERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFKKIPLMIRRY 227
           ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL  KKIPL++RRY
Sbjct: 61  ERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELSAKKIPLVVRRY 120

Query: 226 LPDGSYEDWNVRELTIPE 173
           LPDGSYEDW V EL + E
Sbjct: 121 LPDGSYEDWTVSELIVSE 138


>emb|CBQ68854.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
           III [Sporisorium reilianum SRZ2]
          Length = 138

 Score =  133 bits (334), Expect = 4e-37
 Identities = 63/78 (80%), Positives = 69/78 (88%)
 Frame = -3

Query: 406 ERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFKKIPLMIRRY 227
           ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL  KKIPL++RRY
Sbjct: 61  ERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELSAKKIPLVVRRY 120

Query: 226 LPDGSYEDWNVRELTIPE 173
           LPDGSYEDW V EL + E
Sbjct: 121 LPDGSYEDWTVSELIVSE 138


>emb|CCF50844.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
           III [Ustilago hordei]
          Length = 138

 Score =  132 bits (333), Expect = 5e-37
 Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
 Frame = -3

Query: 436 DSNKPAA--VEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D + P A    +ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 49  DPSTPMAGQANQERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 108

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL   E
Sbjct: 109 AAKKIPLVVRRYLPDGSYEDWTVSELIASE 138


>ref|XP_016269608.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
           [Rhodotorula toruloides NP11]
 gb|EMS18489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
           [Rhodotorula toruloides NP11]
 emb|CDR49125.1| RHTO0S23e01156g1_1 [Rhodotorula toruloides]
          Length = 138

 Score =  132 bits (333), Expect = 5e-37
 Identities = 63/84 (75%), Positives = 72/84 (85%)
 Frame = -3

Query: 436 DSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRF 257
           +   PA   KERVTTPYMTKYE+ARILGTRALQISMNAP+LVP + ETDPLEIA+KEL  
Sbjct: 52  EGEMPAEANKERVTTPYMTKYERARILGTRALQISMNAPVLVPLDKETDPLEIAQKELAA 111

Query: 256 KKIPLMIRRYLPDGSYEDWNVREL 185
           K+IPL++RR+LPDGSYEDW V EL
Sbjct: 112 KRIPLVVRRFLPDGSYEDWLVSEL 135


>emb|CDS01585.1| hypothetical protein [Sporisorium scitamineum]
 emb|CDU24804.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
           III [Sporisorium scitamineum]
          Length = 138

 Score =  132 bits (332), Expect = 7e-37
 Identities = 63/78 (80%), Positives = 69/78 (88%)
 Frame = -3

Query: 406 ERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFKKIPLMIRRY 227
           ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL  KKIPL++RRY
Sbjct: 61  ERITTPYMTKYERARILGTRALQISMNAPVLVPIEGETDPLEIAMKELSAKKIPLVVRRY 120

Query: 226 LPDGSYEDWNVRELTIPE 173
           LPDGSYEDW V EL + E
Sbjct: 121 LPDGSYEDWTVSELIVSE 138


>emb|SHO78986.1| RNA polymerase subunit ABC23 [Malassezia sympodialis ATCC 42132]
          Length = 145

 Score =  132 bits (331), Expect = 1e-36
 Identities = 63/79 (79%), Positives = 70/79 (88%)
 Frame = -3

Query: 409 KERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFKKIPLMIRR 230
           +ER+TTPYMTKYEKARILGTRALQISMNAP+LVP E E DPL IA+KEL  KKIPL++RR
Sbjct: 67  EERITTPYMTKYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELAAKKIPLLVRR 126

Query: 229 YLPDGSYEDWNVRELTIPE 173
           YLPDGSYEDW+V EL I E
Sbjct: 127 YLPDGSYEDWSVSELIITE 145


>ref|XP_014653698.1| DNA-directed RNA Polymerase II subunit F [Moesziomyces antarcticus]
 dbj|GAK68099.1| DNA-directed RNA Polymerase II subunit F [Moesziomyces antarcticus]
          Length = 193

 Score =  133 bits (335), Expect = 1e-36
 Identities = 63/90 (70%), Positives = 73/90 (81%)
 Frame = -3

Query: 442 DVDSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D  ++      ++R+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 104 DPSTSMAGQANQDRITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKEL 163

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL + E
Sbjct: 164 AAKKIPLVVRRYLPDGSYEDWTVSELIVTE 193


>emb|SAM84112.1| probable Rpo26-18kD subunit of DNA-directed RNA polymerases I, II,
           III [Ustilago bromivora]
          Length = 138

 Score =  131 bits (330), Expect = 1e-36
 Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
 Frame = -3

Query: 436 DSNKPAA--VEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKEL 263
           D + P A    +ER+TTPYMTKYE+ARILGTRALQISMNAP+LVP E ETDPLEIA KEL
Sbjct: 49  DPSTPMAGQTNQERITTPYMTKYERARILGTRALQISMNAPVLVPTEGETDPLEIAIKEL 108

Query: 262 RFKKIPLMIRRYLPDGSYEDWNVRELTIPE 173
             KKIPL++RRYLPDGSYEDW V EL   E
Sbjct: 109 AAKKIPLVVRRYLPDGSYEDWTVSELISSE 138


>gb|PRQ77353.1| RNA polymerase, subunit omega/K/RPB6 [Rhodotorula toruloides]
          Length = 180

 Score =  132 bits (333), Expect = 2e-36
 Identities = 63/84 (75%), Positives = 72/84 (85%)
 Frame = -3

Query: 436 DSNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRF 257
           +   PA   KERVTTPYMTKYE+ARILGTRALQISMNAP+LVP + ETDPLEIA+KEL  
Sbjct: 94  EGEMPAEANKERVTTPYMTKYERARILGTRALQISMNAPVLVPLDKETDPLEIAQKELAA 153

Query: 256 KKIPLMIRRYLPDGSYEDWNVREL 185
           K+IPL++RR+LPDGSYEDW V EL
Sbjct: 154 KRIPLVVRRFLPDGSYEDWLVSEL 177


>gb|KWU41615.1| RNA polymerase Rpb6 [Rhodotorula sp. JG-1b]
          Length = 101

 Score =  128 bits (322), Expect = 8e-36
 Identities = 61/80 (76%), Positives = 70/80 (87%)
 Frame = -3

Query: 424 PAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFKKIP 245
           P    +ERVTTPYMTKYE+ARILGTRALQISMNAP+LVP E E+DPL+IA+KEL  KKIP
Sbjct: 19  PEQANEERVTTPYMTKYERARILGTRALQISMNAPVLVPLEGESDPLQIAQKELAAKKIP 78

Query: 244 LMIRRYLPDGSYEDWNVREL 185
           L++RR+LPDGSYEDW V EL
Sbjct: 79  LVVRRFLPDGSYEDWLVSEL 98


>ref|XP_014182524.1| DNA-directed RNA polymerases I, II, and III polypeptide
           [Trichosporon asahii var. asahii CBS 2479]
 gb|EJT51339.1| DNA-directed RNA polymerases I, II, and III polypeptide
           [Trichosporon asahii var. asahii CBS 2479]
 gb|EKC99613.1| DNA-directed RNA polymerases I, II, and III polypeptide
           [Trichosporon asahii var. asahii CBS 8904]
          Length = 136

 Score =  129 bits (325), Expect = 8e-36
 Identities = 62/87 (71%), Positives = 71/87 (81%)
 Frame = -3

Query: 433 SNKPAAVEKERVTTPYMTKYEKARILGTRALQISMNAPILVPRENETDPLEIAKKELRFK 254
           + K A   + R+TTPYMTKYE+AR+LGTRALQISMNAP+LVP E ETDPLEIA KEL  K
Sbjct: 50  TGKAAVANEVRITTPYMTKYERARVLGTRALQISMNAPVLVPVEGETDPLEIALKELAAK 109

Query: 253 KIPLMIRRYLPDGSYEDWNVRELTIPE 173
           KIPL+IRRYLPD S+EDW V EL + E
Sbjct: 110 KIPLVIRRYLPDNSFEDWKVEELIVQE 136