BLASTX nr result
ID: Ophiopogon27_contig00037298
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00037298
(441 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 137 2e-34
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 137 2e-34
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo... 133 8e-34
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 134 2e-33
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 133 3e-33
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 132 9e-33
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo... 131 1e-32
gb|ONK68535.1| uncharacterized protein A4U43_C05F12950 [Asparagu... 125 2e-32
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 129 8e-32
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 129 8e-32
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 128 2e-31
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 128 2e-31
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 128 2e-31
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 127 3e-31
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 127 3e-31
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 127 5e-31
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 126 7e-31
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 126 7e-31
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 126 7e-31
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 124 1e-30
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 137 bits (344), Expect = 2e-34
Identities = 77/149 (51%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI++LLA+VA+ +L+LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 1413 HSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSL 1472
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND---LTYLLYVDDMLITTKNKT 90
KQSPRQ YK+FDSFMI+ YTRCDYD+C+ ++ +D + LLYVDDMLI +KN +
Sbjct: 1473 YGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMS 1532
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+K+QL +F+MKDL KILGM+I
Sbjct: 1533 EINKLKSQLSGEFEMKDLGAAKKILGMDI 1561
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 137 bits (344), Expect = 2e-34
Identities = 77/149 (51%), Positives = 103/149 (69%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI++LLA+VA+ +L+LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 1392 HSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMRQPEGFTVPGKEDHVCLLKKSL 1451
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND---LTYLLYVDDMLITTKNKT 90
KQSPRQ YK+FDSFMI+ YTRCDYD+C+ ++ +D + LLYVDDMLI +KN +
Sbjct: 1452 YGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIASKNMS 1511
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+K+QL +F+MKDL KILGM+I
Sbjct: 1512 EINKLKSQLSGEFEMKDLGAAKKILGMDI 1540
>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 133 bits (334), Expect = 8e-34
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
HTSI++LLA VA F+L+LEQ+ VK FLHGELEE IY+ QPE +
Sbjct: 73 HTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSL 132
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTY---LLYVDDMLITTKNKT 90
KQ+PRQ YK+FDSFMI Y+R YD CI F+Q D T+ LLYVDDMLI +++K+
Sbjct: 133 YGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKS 192
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+KAQL +F+MK+L KILGMEI
Sbjct: 193 LISKLKAQLNNEFEMKELGAAKKILGMEI 221
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 134 bits (336), Expect = 2e-33
Identities = 75/150 (50%), Positives = 101/150 (67%), Gaps = 5/150 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI++LLA+VAQ +++L Q+ VK FLHG+LEE IY+ QPE +
Sbjct: 670 HSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQPEGFKVAGKENMFCKLEKSL 729
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTY---LLYVDDMLITTKNKT 90
KQSPRQ YK+FD FM++ +YTR YD C+ ++ +D ++ LLYVDDMLI +KNK
Sbjct: 730 YGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHDGSFIYLLLYVDDMLIASKNKE 789
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEIT 3
IEK+K QL +F+MKDL E KILGMEI+
Sbjct: 790 EIEKLKTQLNGEFEMKDLGEAKKILGMEIS 819
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 133 bits (334), Expect = 3e-33
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
HTSI++LLA VA F+L+LEQ+ VK FLHGELEE IY+ QPE +
Sbjct: 602 HTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSL 661
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTY---LLYVDDMLITTKNKT 90
KQ+PRQ YK+FDSFMI Y+R YD CI F+Q D T+ LLYVDDMLI +++K+
Sbjct: 662 YGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKS 721
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+KAQL +F+MK+L KILGMEI
Sbjct: 722 LISKLKAQLNNEFEMKELGAAKKILGMEI 750
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 132 bits (331), Expect = 9e-33
Identities = 76/149 (51%), Positives = 96/149 (64%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
HTSI++LLAIVA NL+LEQ+ VK FLHGELEE IY+ QP+ +
Sbjct: 882 HTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSL 941
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTYL---LYVDDMLITTKNKT 90
KQSPRQ YK+FDS+M+K YTR YD C+ + + ND +++ LYVDDMLI K K
Sbjct: 942 YGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKY 1001
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I+K+K L +F+MKDL KILGMEI
Sbjct: 1002 DIQKLKGLLSAEFEMKDLGAARKILGMEI 1030
>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Capsicum
baccatum]
Length = 1526
Score = 131 bits (330), Expect = 1e-32
Identities = 77/149 (51%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI++LLA+VA ++L+LEQ+ VK FLHG LEE IYI+QPE +
Sbjct: 562 HSSIRVLLALVALYDLELEQLDVKTAFLHGNLEEEIYIQQPEGFVVPGKENHVCRLKKSL 621
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTY-LLYVDDMLITTKNKT 90
KQSPRQ YK+FDSFM Y+R YD+C+ F++ +D L Y LLYVDDMLI ++KT
Sbjct: 622 YGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSLVYLLLYVDDMLIAARDKT 681
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
++K+K QL +FDMKDL KILGMEI
Sbjct: 682 LVDKLKVQLNSEFDMKDLGPAKKILGMEI 710
>gb|ONK68535.1| uncharacterized protein A4U43_C05F12950 [Asparagus officinalis]
Length = 299
Score = 125 bits (315), Expect = 2e-32
Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
HTSI++L A+VA FNL+LEQ+ VK FLHGEL+E+I++ QPE +
Sbjct: 53 HTSIRVLFAMVAHFNLELEQLDVKTAFLHGELDEQIFMHQPEGFIVEGKEDHVCRLKKSL 112
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND---LTYLLYVDDMLITTKNKT 90
KQSPRQ Y +FD+FM + Y+R YDSC+ K+ ND + LLYVDDMLI K+ +
Sbjct: 113 YGLKQSPRQWYLRFDTFMFEHGYSRNKYDSCVYHKKLNDGFFVYLLLYVDDMLIAAKDMS 172
Query: 89 HIEKIKAQLMKKFDMKDLEET-KILGMEI 6
I ++K+QL +F+MK+L T KILGMEI
Sbjct: 173 EINELKSQLKHEFEMKNLGATKKILGMEI 201
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 129 bits (324), Expect = 8e-32
Identities = 75/149 (50%), Positives = 98/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 649 HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 708
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YD+C+ K + + LLYVDDMLI K+K+
Sbjct: 709 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 768
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
IEK+KAQL +F+MKDL KILGMEIT
Sbjct: 769 IEKLKAQLSSEFEMKDLGAAKKILGMEIT 797
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 129 bits (324), Expect = 8e-32
Identities = 76/149 (51%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 786 HSSIRTLLSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSL 845
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FK--QCNDLTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 846 YGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVDGSSIYLLLYVDDMLIAAKDKSE 905
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
IEK+KAQL +F+MKDL KILGMEIT
Sbjct: 906 IEKLKAQLSSEFEMKDLGAAKKILGMEIT 934
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 128 bits (321), Expect = 2e-31
Identities = 75/149 (50%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 665 HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 724
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 725 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 784
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F+MKDL KILGMEIT
Sbjct: 785 IAKLKAQLSSEFEMKDLGAAKKILGMEIT 813
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 128 bits (321), Expect = 2e-31
Identities = 75/149 (50%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 833 HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 892
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 893 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 952
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F+MKDL KILGMEIT
Sbjct: 953 IAKLKAQLSSEFEMKDLGAAKKILGMEIT 981
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 128 bits (321), Expect = 2e-31
Identities = 75/149 (50%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 816 HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 875
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 876 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 935
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F+MKDL KILGMEIT
Sbjct: 936 IAKLKAQLSSEFEMKDLGAAKKILGMEIT 964
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 127 bits (320), Expect = 3e-31
Identities = 74/149 (49%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H SI++LLA+V+ FNL+L+Q+ VK FLHG LEE IY+KQPE +
Sbjct: 1005 HKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSL 1064
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTY---LLYVDDMLITTKNKT 90
KQSPRQ YK+FD+FM+ + R YDSC+ FK D ++ LLYVDDMLI KN+
Sbjct: 1065 YGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRA 1124
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+K L +F+MKDL KILGMEI
Sbjct: 1125 EINKLKQLLSSEFEMKDLGAAKKILGMEI 1153
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 127 bits (320), Expect = 3e-31
Identities = 74/149 (49%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H SI++LLA+V+ FNL+L+Q+ VK FLHG LEE IY+KQPE +
Sbjct: 1206 HKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSL 1265
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCNDLTY---LLYVDDMLITTKNKT 90
KQSPRQ YK+FD+FM+ + R YDSC+ FK D ++ LLYVDDMLI KN+
Sbjct: 1266 YGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAAKNRA 1325
Query: 89 HIEKIKAQLMKKFDMKDL-EETKILGMEI 6
I K+K L +F+MKDL KILGMEI
Sbjct: 1326 EINKLKQLLSSEFEMKDLGAAKKILGMEI 1354
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 127 bits (318), Expect = 5e-31
Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 879 HSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 938
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 939 YGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGSVIYLLLYVDDMLIAAKDKSE 998
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
IEK+KAQL +F+MKDL KILGMEIT
Sbjct: 999 IEKLKAQLSSEFEMKDLGAAKKILGMEIT 1027
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 126 bits (317), Expect = 7e-31
Identities = 75/149 (50%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 942 HSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSL 1001
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 1002 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 1061
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F MKDL KILGMEIT
Sbjct: 1062 IAKLKAQLSSEFGMKDLGAAKKILGMEIT 1090
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 126 bits (317), Expect = 7e-31
Identities = 75/149 (50%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL IVA + +LEQ+ VK FLHGELEE IY++QPE +
Sbjct: 942 HSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSL 1001
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 1002 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 1061
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F MKDL KILGMEIT
Sbjct: 1062 IAKLKAQLSSEFGMKDLGAAKKILGMEIT 1090
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 126 bits (317), Expect = 7e-31
Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 4/149 (2%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
H+SI+ LL+IVA + +LEQ+ VK FLHGELEE IY++QP+ +
Sbjct: 1114 HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSL 1173
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND--LTYLLYVDDMLITTKNKTH 87
KQSPRQ YK+FDSFM+ ++ R +YDSC+ K + + LLYVDDMLI K+K+
Sbjct: 1174 YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIAAKDKSE 1233
Query: 86 IEKIKAQLMKKFDMKDL-EETKILGMEIT 3
I K+KAQL +F+MKDL KILGMEIT
Sbjct: 1234 IAKLKAQLSSEFEMKDLGAAKKILGMEIT 1262
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 124 bits (312), Expect = 1e-30
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Frame = -2
Query: 437 HTSIQLLLAIVAQFNLKLEQIAVKKVFLHGELEERIYIKQPEDY-XXXXXXXXXXXXXXX 261
HTSI+LLL+I AQ+++++EQ+ VK FLHG+LEE IY+ QPE +
Sbjct: 73 HTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKEDLVCRLRKSL 132
Query: 260 XXXKQSPRQ*YKQFDSFMIKARYTRCDYDSCI*FKQCND---LTYLLYVDDMLITTKNKT 90
KQSPRQ YK+FD++M+K YTRC YD C+ + D + LLYVDDMLI K+ +
Sbjct: 133 YGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLIACKDMS 192
Query: 89 HIEKIKAQLMKKFDMKDLEETK-ILGMEI 6
IE++K +L +FDMKDL + ILG+EI
Sbjct: 193 KIEELKKKLGAEFDMKDLGAAQNILGIEI 221