BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00036264
         (710 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   110   5e-24
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   109   6e-24
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   107   5e-23
gb|ONK64083.1| uncharacterized protein A4U43_C07F21910 [Asparagu...    89   1e-18
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    94   3e-18
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      92   1e-17
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    92   1e-17
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           92   2e-17
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      92   2e-17
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]      91   5e-17
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    90   6e-17
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    90   6e-17
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    89   1e-16
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]          89   2e-16
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]      89   2e-16
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc...    87   8e-16
gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium bar...    85   8e-16
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]                         86   2e-15
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...    86   2e-15
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...    85   3e-15

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  110 bits (275), Expect = 5e-24
 Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIR-REEGIKF*DLEVIKMVLSRDVIFNEACIL 528
            LH+F S++YYHV + K++PR KK +F+G     +G +   LE  K ++SRDV F+E+ +L
Sbjct: 638  LHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTIISRDVTFDESAML 697

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
            K                  +QVE +     P  + +   A    +   D ++  T    +
Sbjct: 698  KKVNPEGADSTPQQVECARKQVEFEPKVVIPTRNTTSDSAMAEEE--SDEEEVPTQESQQ 755

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGSDKWK 168
            +S       I+ R+ + + + P+RF DM +AYA     V + IP T+ EA +SS S  W 
Sbjct: 756  QS-----APIAVRRQRRDIQKPSRFMDM-VAYAL---PVVDDIPSTYPEAIMSSESGNWA 806

Query: 167  TVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWIS 63
              M+EEM+SL K       +LPKGKK I CKWVF KK   S
Sbjct: 807  GAMEEEMQSLKKNKTWKLAQLPKGKKAIGCKWVFAKKEEFS 847


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  109 bits (273), Expect(2) = 6e-24
 Identities = 77/217 (35%), Positives = 111/217 (51%), Gaps = 7/217 (3%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            LH+F   +YYHV++ K++PR KK IF+GI    +G +   LE  K ++SRDV F+E+ +L
Sbjct: 433  LHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTML 492

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           +G  +QVE +     P           +     D ++        
Sbjct: 493  ------GKVTTEQKKNGTPKQVEFERKIVFPANDEE---KTPMVDEESDEEEVHI----- 538

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGSDKWK 168
            +   Q  +SI+ RKPK  T  PAR+ DM ++YA    V  + IP T+ EA   S  DKW+
Sbjct: 539  QEPPQQLESIALRKPKRTTIMPARYVDM-VSYA--SPVASDDIPTTYIEAVKGSEEDKWR 595

Query: 167  TVMDEEMKSLYKKE------LPKGKKTIDCKWVFVKK 75
            + M EEM+SL + +      LPKGKK I CKWV+ KK
Sbjct: 596  SAMSEEMESLRRNQTWKLANLPKGKKAIGCKWVYAKK 632



 Score = 29.6 bits (65), Expect(2) = 6e-24
 Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -2

Query: 79  KKDGSLDLT-VCYKARLVAKEYAKK 8
           KKDG  D + V YKARLVAK YA+K
Sbjct: 631 KKDGFSDKSEVRYKARLVAKGYAQK 655


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  107 bits (268), Expect = 5e-23
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 7/221 (3%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIR-REEGIKF*DLEVIKMVLSRDVIFNEACIL 528
            LH+F S++YYHV + K++PR KK +F+G     +G +   LE  K ++SRDV F+E+ +L
Sbjct: 584  LHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVML 643

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
            K                + +QVE + +   P  + +    + + +   D ++  T    +
Sbjct: 644  KKVNPEGTDSTPQQVECVRKQVEFEPTVVIPTRNTTSD--SPMAEEESDEEEVPTQESQQ 701

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGSDKWK 168
            +S       I+ R+ + + + PARF DM +AYA     V + IP T+    LSS S  W 
Sbjct: 702  QS-----APIAVRRQRRDIQKPARFMDM-VAYAL---PVVDDIPSTYPGVILSSESGNWA 752

Query: 167  TVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWIS 63
              M+EEM+SL K       +LPKGKK I CKWVF KK   S
Sbjct: 753  GAMEEEMQSLKKNKTWKLTQLPKGKKAIGCKWVFAKKEKFS 793


>gb|ONK64083.1| uncharacterized protein A4U43_C07F21910 [Asparagus officinalis]
          Length = 162

 Score = 89.4 bits (220), Expect = 1e-18
 Identities = 42/94 (44%), Positives = 64/94 (68%), Gaps = 6/94 (6%)
 Frame = -1

Query: 338 GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGSDKWKTVM 159
           G +Q+SI+A +P+   +    ++D+ +AYA  +EVV++ +P TF+EAE SS S +W   M
Sbjct: 18  GHVQESIAANRPRMVIRRLTTYNDVIVAYALSIEVVDDMVPSTFREAESSSNSIRWMEAM 77

Query: 158 DEEMKSLYKKE------LPKGKKTIDCKWVFVKK 75
           +EE++SL K +      LPKGKK I CKWV++KK
Sbjct: 78  EEEIRSLQKNDTWKLAKLPKGKKAIGCKWVYMKK 111


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 19/233 (8%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L  F   +YYHV + K+EPR KK +FVG     +G +       ++++SR+V+F+E+ +L
Sbjct: 637  LKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLL 696

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
            +                      +  ++ S  GS+  ++   V Q   D+K+     Q+ 
Sbjct: 697  RTI--------------------VKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEP 736

Query: 347  KS*GQIQDSISA---------RKPKWNTK*PAR--FDDMAIAYAF-LMEVVEESIPITFK 204
            ++   I +S+ +         R  +   + P R  F+DM + YA  + E V+ S P T+K
Sbjct: 737  QTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDM-VGYALQVAEEVDTSEPSTYK 795

Query: 203  EAELSSGSDKWKTVMDEEMKSLYKKEL------PKGKKTIDCKWVFVKKRWIS 63
            EA LSS S+KW   M +EM+SL+K +       P G+K I CKWVF KK  IS
Sbjct: 796  EAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGIS 848


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ IL
Sbjct: 694  LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVIL 753

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 754  HDKPSTNVPVESQEKASV--QVEHLISS----GHAPEKENVAINQDAPVIEDSDSSIVQQ 807

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
             S    + SI+  KPK N K P R+ + A   A+ + V EE    + P T+ EA +S   
Sbjct: 808  SS----KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDC 863

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 864  NRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSD 911


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ IL
Sbjct: 694  LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVIL 753

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 754  HDKPSTNVPVESQEKASV--QVEHLISS----GHAPEKENVAINQDAPVIEDSDSSIVQQ 807

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
             S    + SI+  KPK N K P R+ + A   A+ + V EE    + P T+ EA +S   
Sbjct: 808  SS----KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDC 863

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 864  NRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSD 911


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 75/221 (33%), Positives = 106/221 (47%), Gaps = 11/221 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVR---KKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEA 537
            L IF   ++ H+    + K++P++KK IFVG  +  +G K  D    KMVLSRDV+F+E 
Sbjct: 567  LRIFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQ 626

Query: 536  CILKXXXXXXXXXXXXXXSGISQ-QVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT 360
             +LK              SG    QVE++ +      +V  +     T   HD  D+G  
Sbjct: 627  FMLKQSRETEVTESAGGSSGKEVIQVELEPTPNKNTSAVHQQ-PPEPTPINHDTADSGGA 685

Query: 359  *QDKKS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGS 180
             +D       Q +    +   N      F+D+A AYA L        P TF+EA +S   
Sbjct: 686  SEDSVGVDDYQLARDRERRSINPPQRYGFEDLA-AYALL---TSSGDPSTFREAIVSQEK 741

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKK 75
            DKW   M EEM+SL K       +LP GK+TI CKWV+ +K
Sbjct: 742  DKWMGAMMEEMESLQKNQTWELVQLPMGKRTIGCKWVYKRK 782


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVG-IRREEGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G +   +G K    E  K+V+SR+V+F+E+ +L
Sbjct: 568  LRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIML 627

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                             +S QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 628  HDKPSTNVPVESQEK--VSVQVEHLISS----GHAPEKEDVAINQDAPVIEDSDSSIVQQ 681

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
                  + SI+  +PK NTK P R+ + A   A+ + V EE    + P T+ +A +S   
Sbjct: 682  SP----KRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDC 737

Query: 179  DKWKTVMDEEMKSLYK------KELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K      ++LPK KK I CKW+F +K  +S  D
Sbjct: 738  NRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSD 785


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRREEGIKF*DL---EVIKMVLSRDVIFNEAC 534
            L +F   +Y HV   K+EPR  K IF+G     G+K   L   +  K+V+SR+V+F+E+ 
Sbjct: 538  LRVFGCTAYAHVDNGKLEPRAIKCIFLGY--PSGVKDYKLWCPKTKKVVISRNVVFHESV 595

Query: 533  ILKXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*Q 354
            +L               + +  +  I +        V+    A+V +      D+    Q
Sbjct: 596  MLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDASVIE----DSDSSAVQQ 651

Query: 353  DKKS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSS 186
              K       SI+  KPK N K P R+ + A   A+ + V EE    + P T+ EA +S 
Sbjct: 652  SPKR------SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSD 705

Query: 185  GSDKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            G ++W T M +EM+SL K       +LPK KK I CKW+F +K+ +S  D
Sbjct: 706  GCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSD 755


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
 gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGI-RREEGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F  ++Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ +L
Sbjct: 620  LRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 679

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  +  I +       +V+  + A V     +  D+    Q  
Sbjct: 680  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVI----EDSDSSIVQQSP 735

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
            K       SI+  KPK N K P R+ + A   A+ + V EE      P T+ +A +S   
Sbjct: 736  K------HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDC 789

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 790  NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSD 837


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 90.1 bits (222), Expect = 6e-17
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGI-RREEGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F  ++Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ +L
Sbjct: 657  LRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 716

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  +  I +       +V+  + A V     +  D+    Q  
Sbjct: 717  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVI----EDSDSSIVQQSP 772

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
            K       SI+  KPK N K P R+ + A   A+ + V EE      P T+ +A +S   
Sbjct: 773  K------HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDC 826

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 827  NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSD 874


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score = 89.4 bits (220), Expect = 1e-16
 Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ +L
Sbjct: 866  LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 925

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 926  HDKPSTNVPVESQEKASV--QVEHLISS----GHAPEKEDVAINQDEPVIEDSNSSIVQQ 979

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
                  + SI+  +PK N K P R+ + A   A+ + V EE    + P T+ EA +S   
Sbjct: 980  SP----KRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDC 1035

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  IS  D
Sbjct: 1036 NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSD 1083


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    +  K+V+SR+V+F+E+ +L
Sbjct: 441  LRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGMKGYKLWCPKTKKVVISRNVVFHESVML 500

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  +  I +       +V+      V +      D+ T  Q  
Sbjct: 501  HDKPSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDVPVIE----DSDSSTVQQSP 556

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
            K        I+  KPK NTK P R+ + A   A+ + V E+    + P T+ EA +S   
Sbjct: 557  KR------FIAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDC 610

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K+ IS  D
Sbjct: 611  NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSD 658


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+V+F+E+ IL
Sbjct: 631  LRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVIL 690

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 691  HDKPSTNVPVESQEKASV--QVEHLISS----GHAPEKEDVAINQDAPVIEDSDSSIVHQ 744

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
                  + SI+  KPK N K P R+ + A   A+ + V E+    + P T+ EA +S   
Sbjct: 745  SP----KRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDC 800

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 801  NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSD 848


>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 546

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704 LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
           L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V+SR+++F+E+ +L
Sbjct: 268 LRVFGCTAYAHVDNGKLEPRANKCIFLGYPSSVKGYKLWCPETKKVVISRNIVFHESVML 327

Query: 527 KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                          + +  +  I          V+    A V     +  D+ T  Q  
Sbjct: 328 HDKPSTNVPVESQEKASVQVEHLISLGHAPEKEDVAINQDAPVI----EDSDSSTVHQYP 383

Query: 347 KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
           K       SI+  +PK NTK P R+ + A    + + V EE    + P T+ +A +S   
Sbjct: 384 KR------SIAKDRPKRNTKPPQRYIEEANIVVYALSVAEEIEGNAEPSTYSKAVVSDDC 437

Query: 179 DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
           ++W T M +EM+S+ K       +LPK  K I CKW+F +K  IS  D
Sbjct: 438 NRWITAMHDEMESVEKNHTWKLVKLPKENKPIRCKWIFKRKEGISPSD 485


>gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium barbadense]
          Length = 1034

 Score = 84.7 bits (208), Expect(2) = 8e-16
 Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 6/93 (6%)
 Frame = -1

Query: 335 QIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEESIPITFKEAELSSGSDKWKTVMD 156
           Q  DSI+ R+P+   + PARFDDM +AYA L  + ++ +P T+ +A  +S S KWK  M+
Sbjct: 513 QQHDSIAYRRPRREIRMPARFDDM-VAYALL--IADDDVPSTYTKARSNSDSVKWKQAMN 569

Query: 155 EEMKSLYKKE------LPKGKKTIDCKWVFVKK 75
           EEM+SL+K        LPKGKK I CKWV+ KK
Sbjct: 570 EEMQSLHKNRTWELVTLPKGKKAIGCKWVYAKK 602



 Score = 27.3 bits (59), Expect(2) = 8e-16
 Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 79  KKDGSLDLT-VCYKARLVAKEYAKK 8
           KK+G  D   V YKARLVAK YA+K
Sbjct: 601 KKEGFPDKNEVRYKARLVAKGYAQK 625


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]
          Length = 1009

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*DLEVIKMVLSRDVIFNEACIL 528
            L +F   +Y HV   K+EPR  K IF+G     +G K    E  K+V++R+V+F+E+ +L
Sbjct: 480  LRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVINRNVVFHESVML 539

Query: 527  KXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT*QDK 348
                           + +  QVE   SS    G    K    + Q    ++D+ ++   +
Sbjct: 540  HDKPSTNVPVESQEKASV--QVEHLISS----GHAPEKEDVAINQDAPVIEDSDSSIVQQ 593

Query: 347  KS*GQIQDSISARKPKWNTK*PARFDDMAIAYAFLMEVVEE----SIPITFKEAELSSGS 180
                  + SI+  +PK NTK P ++ + A    + + V EE    + P T+ +A +S   
Sbjct: 594  SP----KRSIAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDC 649

Query: 179  DKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
            ++W T M +EM+SL K       +LPK KK I CKW+F +K  +S  D
Sbjct: 650  NRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSD 697


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 13/230 (5%)
 Frame = -1

Query: 704  LHIFESLSYYHVRKKKIEPRTKKVIFVGIRRE-EGIKF*--DLEVIKMVLSRDVIFNEAC 534
            L IF   +Y HV   K+ PR  K IF+G   E +G +    + +  +++LSRDV FNE  
Sbjct: 350  LRIFGCPAYAHVNDGKLAPRAIKCIFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDA 409

Query: 533  ILKXXXXXXXXXXXXXXS-GISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGTT* 357
            +L                 G S++VE++  S +P   V    +++ T+    + D G   
Sbjct: 410  LLSSGKQSSVSSSSTNNLQGTSEKVELELKSVAPNVDVP---SSSTTE--SSIDDHG--- 461

Query: 356  QDKKS*GQIQDSISARKPKWNTK*PARF-DDMAIAYAFLM--EVVEESIPITFKEAELSS 186
             D     Q + +I+  + +   K PAR+ DD   AYA  +  EV ++  P ++ EA    
Sbjct: 462  DDHPIQQQEEYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCV 521

Query: 185  GSDKWKTVMDEEMKSLYKK------ELPKGKKTIDCKWVFVKKRWISGFD 54
             S KW   M+EE++SL+K       +LPKGK+ + CKW++ KK  I G +
Sbjct: 522  DSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVE 571


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
 Frame = -1

Query: 704 LHIFESLSYYHVRKKKIEPRTKKVIFVGIRREEGIKF*DL------EVIKMVLSRDVIFN 543
           L IF   +Y HV   K+EPR  K IF+G     G+K   L         K+V+SRDV FN
Sbjct: 38  LRIFGCPAYAHVNDGKLEPRAMKCIFLGY--PTGVKGYRLWCTENNRTKKIVISRDVTFN 95

Query: 542 EACILKXXXXXXXXXXXXXXSGISQQVEIDASSQSPGGSVSFKIAATVTQ*GHDVKDTGT 363
           E+ +                 G  ++VE  A ++S    V  K+   V       K+   
Sbjct: 96  ESAMF----------------GQKEEVENLAGNKSTNKGVHQKVEFEVED---SNKENLN 136

Query: 362 T*QDKKS*GQIQDSISARKPKWNTK*PARFDDM-------AIAYAFLM-EVVEESIPITF 207
             +   +  +   SI+ R+ +   + P R+ D+       ++AYA L+ E ++   P ++
Sbjct: 137 PVEQSSNVQEEPQSIATRRTRREIRKPTRYADVTNVVDTNSVAYALLVGENLDSDEPKSY 196

Query: 206 KEAELSSGSDKWKTVMDEEMKSLYKKE------LPKGKKTIDCKWVFVKKRWISGFD 54
           KEA  S  + KW   MDEEM+SL K +      LP+G K + CKWV  +K  I G +
Sbjct: 197 KEAIQSKEASKWLIAMDEEMQSLKKNQTWELVPLPRGVKPVGCKWVLKRKEGIPGVE 253