BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00035155
         (402 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    75   5e-13
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...    75   6e-13
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]    74   2e-12
gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposo...    72   4e-12
gb|OAE22245.1| hypothetical protein AXG93_412s1350 [Marchantia p...    70   2e-11
gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposo...    70   2e-11
gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposo...    70   2e-11
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo...    70   2e-11
gb|PPD70354.1| hypothetical protein GOBAR_DD32770 [Gossypium bar...    69   5e-11
gb|KYP31293.1| Retrovirus-related Pol polyprotein from transposo...    68   1e-10
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...    68   1e-10
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...    68   1e-10
gb|PNX56512.1| hypothetical protein L195_g058242, partial [Trifo...    65   2e-10
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo...    67   3e-10
gb|PHU29315.1| hypothetical protein BC332_01408 [Capsicum chinense]    65   4e-10
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]       66   6e-10
gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]    66   7e-10
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo...    65   1e-09
gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposo...    65   1e-09
emb|CAN84178.1| hypothetical protein VITISV_023699 [Vitis vinifera]    63   1e-09

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 75.1 bits (183), Expect = 5e-13
 Identities = 46/127 (36%), Positives = 65/127 (51%)
 Frame = -2

Query: 383 RRMSKSNSESKKFDSSDKYETNDVDLIGDREVVCSITDCLVSDEDGWIVDSDYSQHISSK 204
           ++ S+  S S      D     D+ L+ D     S         D W++DS  S HI  +
Sbjct: 242 KKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHS---------DVWVLDSGASYHICPR 292

Query: 203 RKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLR 24
           R+ F+TY  V GG+I M N   C+V+G G+I++ +HDGS  TL+ V HVP     + SL 
Sbjct: 293 REWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLS 352

Query: 23  ALRSAGF 3
            L S GF
Sbjct: 353 LLDSKGF 359


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 448

 Score = 74.7 bits (182), Expect = 6e-13
 Identities = 44/123 (35%), Positives = 60/123 (48%)
 Frame = -2

Query: 371 KSNSESKKFDSSDKYETNDVDLIGDREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTF 192
           K++   KK          +     D E+V SI D      D W++DS  S H+   R  F
Sbjct: 11  KNDCPKKKNQKPTAVTVQESTSSSDNELVLSIVDNHQQSADQWVLDSGCSYHMCPNRSWF 70

Query: 191 STYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRS 12
            TY    GG +FM N + C+ +G GTIQ+  HDG   TL+ V HVP+    + S+  L S
Sbjct: 71  LTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEVRHVPDLKKNLISVGVLDS 130

Query: 11  AGF 3
            GF
Sbjct: 131 KGF 133


>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
          Length = 707

 Score = 73.6 bits (179), Expect = 2e-12
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
 Frame = -2

Query: 374 SKSNSESKKFDSSDKYETNDVDLIGDREV-VCSITDCLVSDEDGWIVDSDYSQHISSKRK 198
           +K N E K        E + V+   D E  + S T+    +E  W++DS  + H+S  R 
Sbjct: 243 NKQNREDKGKQPEKSAEASFVETESDGECFIASGTEQRSKNE--WVLDSGCTFHMSPNRD 300

Query: 197 TFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLRAL 18
            F+TY    GG + M N  QC+V+GKGTI++ +HDG   TL+ V HVP+    + SL  L
Sbjct: 301 WFTTYESFNGGLVLMGNDAQCKVVGKGTIKIKTHDGVVRTLTSVRHVPDLKRNLISLGTL 360

Query: 17  RSAG 6
            S G
Sbjct: 361 ESQG 364


>gb|KYP36635.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 364

 Score = 72.0 bits (175), Expect = 4e-12
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D     ED WI+DS  S H+   R  F TY    GG +FM N   C+ IG 
Sbjct: 271 ENELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 330

Query: 119 GTIQMCSHDGSTTTLSGVCHVPE 51
           GTI++  HDG T TL+ V HVPE
Sbjct: 331 GTIKIKMHDGITRTLTEVRHVPE 353


>gb|OAE22245.1| hypothetical protein AXG93_412s1350 [Marchantia polymorpha subsp.
           ruderalis]
          Length = 655

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 37/90 (41%), Positives = 50/90 (55%)
 Frame = -2

Query: 272 DCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHD 93
           D +    D W++DS  S HI S RK FS+Y    GG++ M N   C+VIG G+++  +HD
Sbjct: 88  DDVTHQSDMWVLDSGASYHICSNRKLFSSYCQTYGGSVHMANGAVCKVIGIGSLRSKNHD 147

Query: 92  GSTTTLSGVCHVPESIYIINSLRALRSAGF 3
           G T TL+   HVP     + SL  L   GF
Sbjct: 148 GKTCTLNEFRHVPRITMNLISLSLLDKKGF 177


>gb|KYP37021.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 352

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 38/82 (46%), Positives = 47/82 (57%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D     ED WI+DS  S H+   R  F TY    GG +FM N   C+ IG 
Sbjct: 271 ENELVLSIADQPQHSEDQWILDSGCSFHMCPNRTWFDTYEKKSGGNVFMGNDAPCKTIGI 330

Query: 119 GTIQMCSHDGSTTTLSGVCHVP 54
           GTI++  HDG T TL+ V HVP
Sbjct: 331 GTIKIKMHDGITRTLTKVRHVP 352


>gb|KYP46255.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 507

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 39/99 (39%), Positives = 54/99 (54%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D      + W++DS  S H+   R  F TY    GG +FM N + C+ IG 
Sbjct: 169 ENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 228

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAGF 3
           GTIQ+  HDG   TL+ V HVP+    + S+  L + GF
Sbjct: 229 GTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGF 267


>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 609

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 39/99 (39%), Positives = 54/99 (54%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D      + W++DS  S H+   R  F TY    GG +FM N + C+ IG 
Sbjct: 196 ENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGI 255

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAGF 3
           GTIQ+  HDG   TL+ V HVP+    + S+  L + GF
Sbjct: 256 GTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGF 294


>gb|PPD70354.1| hypothetical protein GOBAR_DD32770 [Gossypium barbadense]
          Length = 1042

 Score = 69.3 bits (168), Expect = 5e-11
 Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 1/125 (0%)
 Frame = -2

Query: 374  SKSNSESKKFDSSDKYETNDVDLIGDREV-VCSITDCLVSDEDGWIVDSDYSQHISSKRK 198
            +++  + K F  +D  E       GD E+ V SI +  VS E  WI+DS Y+ HIS  R 
Sbjct: 728  NQNRKQPKNFTKADIVED-----YGDGELLVASINNSKVSKE--WILDSGYTFHISLNRD 780

Query: 197  TFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLRAL 18
             F+TY  V  G I + N   C++   GTI++   DG   TLSGV HVP+    + SL  +
Sbjct: 781  WFTTYEIVFEGVILIGNNASCKIACVGTIKVKMFDGVVRTLSGVRHVPKLKRNLISLSTI 840

Query: 17   RSAGF 3
             S G+
Sbjct: 841  DSKGY 845


>gb|KYP31293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 569

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 39/99 (39%), Positives = 53/99 (53%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D      D W++DS  S H+   R  F TY    GG +FM N + C+ +G 
Sbjct: 173 NNELVLSIVDNHQQSADQWVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGI 232

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAGF 3
           GTIQ+  HDG   TL+ V HV +    + S+  L S GF
Sbjct: 233 GTIQLRMHDGVIRTLTEVRHVLDLKKNLISVGVLDSKGF 271


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 42/127 (33%), Positives = 67/127 (52%)
 Frame = -2

Query: 383  RRMSKSNSESKKFDSSDKYETNDVDLIGDREVVCSITDCLVSDEDGWIVDSDYSQHISSK 204
            +R  KS S+ ++   +D+    D D   D E+V +++D        WI+D+  + HIS+ 
Sbjct: 768  KRKEKSESQEQQ---NDRANVADADSSSDAEIVLAVSDSYAGGR--WILDTGATFHISTS 822

Query: 203  RKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLR 24
            +  FSTY     G++ M N   C+V+G GT+++   DG   TL+ V H+PE    + SL 
Sbjct: 823  KDAFSTYEKH-SGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLS 881

Query: 23   ALRSAGF 3
             L   GF
Sbjct: 882  TLDKKGF 888


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score = 68.2 bits (165), Expect = 1e-10
 Identities = 42/127 (33%), Positives = 67/127 (52%)
 Frame = -2

Query: 383  RRMSKSNSESKKFDSSDKYETNDVDLIGDREVVCSITDCLVSDEDGWIVDSDYSQHISSK 204
            +R  KS S+ ++   +D+    D D   D E+V +++D        WI+D+  + HIS+ 
Sbjct: 747  KRKEKSESQEQQ---NDRANVADADSSSDAEIVLAVSDSYAGGR--WILDTGATFHISTS 801

Query: 203  RKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLR 24
            +  FSTY     G++ M N   C+V+G GT+++   DG   TL+ V H+PE    + SL 
Sbjct: 802  KDAFSTYEKH-SGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLS 860

Query: 23   ALRSAGF 3
             L   GF
Sbjct: 861  TLDKKGF 867


>gb|PNX56512.1| hypothetical protein L195_g058242, partial [Trifolium pratense]
          Length = 145

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
 Frame = -2

Query: 272 DCL-VSDEDG-----WIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGKGTI 111
           DC  +S++D      W++DS  S H+   RK F+TY  + GG + M N   C+++G GTI
Sbjct: 37  DCFSISEQDHDISGRWMLDSGASHHMCPNRKWFTTYESIDGGIVLMGNNHACKIMGYGTI 96

Query: 110 QMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAG 6
           ++  HDG+  TL  V HVP     + SL  L   G
Sbjct: 97  RIKMHDGAVRTLMNVRHVPNLRKNLISLGVLEENG 131


>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 365

 Score = 66.6 bits (161), Expect = 3e-10
 Identities = 39/98 (39%), Positives = 57/98 (58%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           D E +C+ + C+ S  D WI+DSD S H+   R  FSTY+   GG + M N  +C+ +G 
Sbjct: 153 DSETLCTFS-CMDSS-DSWILDSDCSYHMCPFRDWFSTYSIHDGGRVIMGNNSECKSVGI 210

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAG 6
           GTI++   DG   TL+ V HVP+    + SL  L ++G
Sbjct: 211 GTIKIKMFDGVIRTLTEVRHVPDLRKGLISLGTLDASG 248


>gb|PHU29315.1| hypothetical protein BC332_01408 [Capsicum chinense]
          Length = 190

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
 Frame = -2

Query: 365 NSESKKFDSSDKYETNDVDLIGDR--EVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTF 192
           N    K +  +  +T +  +  D     +  +T+ +    + WI+DS +S H+   +  F
Sbjct: 27  NKGKVKKNEHENSDTAEASVAADEIEGAISLVTENISCSNNEWILDSAFSFHMCPNKGLF 86

Query: 191 STYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRS 12
           STY  V GG + + N + C+++ KGT+++  HDG   TL  V  VPE    + SL  L S
Sbjct: 87  STYDPVEGGVVLVDNNVACKIVRKGTVRIKMHDGIVRTLRNVRCVPELKKNLISLGILES 146

Query: 11  AG 6
            G
Sbjct: 147 LG 148


>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
          Length = 1339

 Score = 66.2 bits (160), Expect = 6e-10
 Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
 Frame = -2

Query: 380 RMSKSNSESKKFDSSDKYETN---DVDLIGDREVVCSITDC-----LVSDEDGWIVDSDY 225
           R  K  ++ K +++++K E N   DV ++ D  +VC   +C     L  DE  W+VDS  
Sbjct: 247 RKLKRENKKKGYNNNNKKEGNNNEDVAIVDDFFIVCD--NCVENINLSCDEMDWVVDSGA 304

Query: 224 SQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLSGVCHVPESI 45
           S H +S+R  FSTY     G + M N  Q  VIG G I + + + +T  L GV H+PE  
Sbjct: 305 STHATSRRDLFSTYETGDFGVVRMGNNGQANVIGIGDICVETSNETTLVLKGVKHIPELR 364

Query: 44  YIINSLRALRSAGF 3
           + + S+  L + G+
Sbjct: 365 FNLLSVGELDNEGY 378


>gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]
          Length = 448

 Score = 65.9 bits (159), Expect = 7e-10
 Identities = 34/91 (37%), Positives = 51/91 (56%)
 Frame = -2

Query: 278 ITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCS 99
           +T+ +    + WI+DS  S H+   +  FSTY  V GG I + N + C+++G GT+++  
Sbjct: 90  VTENISCSNNEWILDSACSFHMCPNKDLFSTYDPVEGGVILVGNNVACKIVGTGTVRIKM 149

Query: 98  HDGSTTTLSGVCHVPESIYIINSLRALRSAG 6
           HDG   TL  V +VPE    + SL  L S G
Sbjct: 150 HDGIVRTLKNVRYVPELKKNLISLGTLESFG 180


>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 593

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 38/99 (38%), Positives = 53/99 (53%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D      + W++DS  S H+   R  F TY    GG +FM N + C+ I  
Sbjct: 248 ENELVLSIVDNHQHFVEQWVLDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACKTISI 307

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAGF 3
           GTIQ+  HDG   TL+ V HVP+    + S+  L + GF
Sbjct: 308 GTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGF 346


>gb|KYP47563.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 269

 Score = 64.7 bits (156), Expect = 1e-09
 Identities = 37/99 (37%), Positives = 53/99 (53%)
 Frame = -2

Query: 299 DREVVCSITDCLVSDEDGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGK 120
           + E+V SI D      + W++DS  S H+   R  F TY     G +FM N + C++IG 
Sbjct: 167 ENELVLSIVDNHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSSGDVFMGNDMACKIIGI 226

Query: 119 GTIQMCSHDGSTTTLSGVCHVPESIYIINSLRALRSAGF 3
            TIQ+  HDG   TL+ V HVP+    + S+  L + GF
Sbjct: 227 ETIQIEMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGF 265


>emb|CAN84178.1| hypothetical protein VITISV_023699 [Vitis vinifera]
          Length = 150

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 33/75 (44%), Positives = 43/75 (57%)
 Frame = -2

Query: 251 DGWIVDSDYSQHISSKRKTFSTYTFV*GGAIFMRNYIQCRVIGKGTIQMCSHDGSTTTLS 72
           D WI+DS  S H+S  R  F+ Y  + GG I M NY+ C+V+   TIQ+  +DG   TL 
Sbjct: 48  DEWIIDSKCSYHLSPNRDWFNIYQPIDGGNILMGNYVVCKVVEINTIQIKMYDGIVRTLI 107

Query: 71  GVCHVPESIYIINSL 27
              HVPE   I+ SL
Sbjct: 108 DARHVPELKTILISL 122