BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00033918
         (1067 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   134   2e-70
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo...   134   2e-70
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   137   9e-70
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   137   9e-70
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     139   3e-68
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024...   125   1e-66
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   135   5e-66
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     133   1e-65
gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposo...   135   2e-65
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     125   6e-65
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen...   127   6e-65
gb|ASR75372.1| retrotransposon protein [Oryza nivara]                 126   1e-64
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     135   3e-64
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                        124   5e-64
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   142   8e-64
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   124   1e-63
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   124   1e-63
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   124   1e-63
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   126   5e-63
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   122   3e-62

>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  134 bits (338), Expect(3) = 2e-70
 Identities = 65/123 (52%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLI 640
            +LKKSLYGLKQ+P+QWYK+FD+FMI + Y+R+ YD  +Y+++ P G FIYLLLY++DMLI
Sbjct: 656  QLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLI 715

Query: 639  SSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFN 463
            +SR ++ +++LK QL+ EF+MK+LG A+KIL +EI RD++     L Q+ Y++++L +FN
Sbjct: 716  ASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFN 775

Query: 462  IRN 454
            + N
Sbjct: 776  MNN 778



 Score =  124 bits (310), Expect(3) = 2e-70
 Identities = 68/140 (48%), Positives = 93/140 (66%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +FKLS  L P+T EE E  + + YASAVGSLMYAM  TRP++   +SMVSRYM
Sbjct: 782  VSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYM 841

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
            H+ GKDH  AVKWI   ++GT ++GLV++R+         +VDSD   D+D+ +S + Y+
Sbjct: 842  HNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYI 901

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FTL    I+ + +LQS  AL
Sbjct: 902  FTLCNSAISWKASLQSIAAL 921



 Score = 58.9 bits (141), Expect(3) = 2e-70
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = -1

Query: 1046 KARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE* 870
            KARLV K + + EGID N++FSP+V+H+SI I           LEQ DVK  FLH +LE 
Sbjct: 576  KARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEE 635

Query: 869  E-FMS*PQDFKV 837
            E +M  P+ F V
Sbjct: 636  EIYMDQPEGFVV 647


>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 503

 Score =  134 bits (338), Expect(3) = 2e-70
 Identities = 65/123 (52%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
 Frame = -3

Query: 816 RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLI 640
           +LKKSLYGLKQ+P+QWYK+FD+FMI + Y+R+ YD  +Y+++ P G FIYLLLY++DMLI
Sbjct: 127 QLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLI 186

Query: 639 SSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFN 463
           +SR ++ +++LK QL+ EF+MK+LG A+KIL +EI RD++     L Q+ Y++++L +FN
Sbjct: 187 ASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFN 246

Query: 462 IRN 454
           + N
Sbjct: 247 MNN 249



 Score =  124 bits (310), Expect(3) = 2e-70
 Identities = 68/140 (48%), Positives = 93/140 (66%)
 Frame = -2

Query: 442 LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
           +S  LA +FKLS  L P+T EE E  + + YASAVGSLMYAM  TRP++   +SMVSRYM
Sbjct: 253 VSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYM 312

Query: 262 HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
           H+ GKDH  AVKWI   ++GT ++GLV++R+         +VDSD   D+D+ +S + Y+
Sbjct: 313 HNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYI 372

Query: 82  FTLSQVPIN*RCTLQSTVAL 23
           FTL    I+ + +LQS  AL
Sbjct: 373 FTLCNSAISWKASLQSIAAL 392



 Score = 58.9 bits (141), Expect(3) = 2e-70
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = -1

Query: 1046 KARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE* 870
            KARLV K + + EGID N++FSP+V+H+SI I           LEQ DVK  FLH +LE 
Sbjct: 47   KARLVVKGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEE 106

Query: 869  E-FMS*PQDFKV 837
            E +M  P+ F V
Sbjct: 107  EIYMDQPEGFVV 118


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  137 bits (346), Expect(3) = 9e-70
 Identities = 70/120 (58%), Positives = 95/120 (79%), Gaps = 2/120 (1%)
 Frame = -3

Query: 813  LKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLIS 637
            LKKSLYGLKQSP+QWYK+FD+FMI+  YTR  YD+ VY+RKL  G  IYLLLY++DMLI+
Sbjct: 1447 LKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIA 1506

Query: 636  SRR-TTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            S+  + +N+LK+QLS EF+MKDLG A+KIL ++I RD++     + QK Y++KVL +F +
Sbjct: 1507 SKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGM 1566



 Score =  115 bits (287), Expect(3) = 9e-70
 Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +FKLS  L P++ EE +  + + Y+SAVGS+MYAM  TRP+I   +S+VSRYM
Sbjct: 1572 VSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYM 1631

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTR----YVDSDCTVDMDKCQST 95
               GK+H  AVKWI+  ++G+ D+ LVY++      +CT     YVDSD   D+DK +S 
Sbjct: 1632 SCPGKEHWQAVKWILRYLRGSADLCLVYDQS-----DCTSSVTGYVDSDYAGDLDKRRSL 1686

Query: 94   TCYVFTLSQVPIN*RCTLQSTVAL 23
            T YVFT S   I+ +  LQSTVAL
Sbjct: 1687 TGYVFTYSGGAISWKAVLQSTVAL 1710



 Score = 62.4 bits (150), Expect(3) = 9e-70
 Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            +KARLVAK + + EGID N+VFSP+VKHSSI +           LEQ DVK  FLH +LE
Sbjct: 1365 FKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELE 1424

Query: 872  *E-FMS*PQDFKV 837
               +M  P+ F V
Sbjct: 1425 ETIYMRQPEGFTV 1437


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  137 bits (346), Expect(3) = 9e-70
 Identities = 70/120 (58%), Positives = 95/120 (79%), Gaps = 2/120 (1%)
 Frame = -3

Query: 813  LKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLIS 637
            LKKSLYGLKQSP+QWYK+FD+FMI+  YTR  YD+ VY+RKL  G  IYLLLY++DMLI+
Sbjct: 1468 LKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYDACVYHRKLSDGSHIYLLLYVDDMLIA 1527

Query: 636  SRR-TTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            S+  + +N+LK+QLS EF+MKDLG A+KIL ++I RD++     + QK Y++KVL +F +
Sbjct: 1528 SKNMSEINKLKSQLSGEFEMKDLGAAKKILGMDIHRDRKAGKLRVSQKNYIEKVLQRFGM 1587



 Score =  115 bits (287), Expect(3) = 9e-70
 Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +FKLS  L P++ EE +  + + Y+SAVGS+MYAM  TRP+I   +S+VSRYM
Sbjct: 1593 VSTPLAPHFKLSAELSPQSDEEKQQMSHIPYSSAVGSVMYAMVCTRPDISHAVSVVSRYM 1652

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTR----YVDSDCTVDMDKCQST 95
               GK+H  AVKWI+  ++G+ D+ LVY++      +CT     YVDSD   D+DK +S 
Sbjct: 1653 SCPGKEHWQAVKWILRYLRGSADLCLVYDQS-----DCTSSVTGYVDSDYAGDLDKRRSL 1707

Query: 94   TCYVFTLSQVPIN*RCTLQSTVAL 23
            T YVFT S   I+ +  LQSTVAL
Sbjct: 1708 TGYVFTYSGGAISWKAVLQSTVAL 1731



 Score = 62.4 bits (150), Expect(3) = 9e-70
 Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            +KARLVAK + + EGID N+VFSP+VKHSSI +           LEQ DVK  FLH +LE
Sbjct: 1386 FKARLVAKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELE 1445

Query: 872  *E-FMS*PQDFKV 837
               +M  P+ F V
Sbjct: 1446 ETIYMRQPEGFTV 1458


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  139 bits (349), Expect(3) = 3e-68
 Identities = 67/122 (54%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            RLKKSLYGLKQSP+QWYK+FD+FM+ +++ R+ YDS  Y K+  G  IYLLLY++DMLI+
Sbjct: 870  RLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIA 929

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ ++ + +LK QLS+EF+MKDLG A+KIL +EI R++      L QK Y++KVLH+FN+
Sbjct: 930  AKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNM 989

Query: 459  RN 454
             +
Sbjct: 990  HD 991



 Score =  109 bits (272), Expect(3) = 3e-68
 Identities = 61/140 (43%), Positives = 90/140 (64%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S LLA +F+LS  L P++  + EY +R+ Y+SAV SLMYAM  +RP++   +S+VSRYM
Sbjct: 995  VSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYM 1054

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1055 ANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSDG---LVGYVDSDFAGDLDRRRSLTGYV 1111

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ + +LQ+TVAL
Sbjct: 1112 FTVGGCAVSWKASLQATVAL 1131



 Score = 61.6 bits (148), Expect(3) = 3e-68
 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVAK Y++  GID N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 789  YKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 848

Query: 872  *E-FMS*PQDFKV 837
             + +M  P+ F V
Sbjct: 849  EDIYMEQPEGFVV 861


>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
          Length = 1892

 Score =  125 bits (314), Expect(3) = 1e-66
 Identities = 67/121 (55%), Positives = 89/121 (73%), Gaps = 2/121 (1%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLI 640
            +LKKSLYGLKQSP+QWYK+FD FM    ++R+ +DS VY++K+     IYLLLY++DMLI
Sbjct: 1523 QLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFDSCVYHKKMSGNSMIYLLLYVDDMLI 1582

Query: 639  SSRR-TTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFN 463
            ++   T +N LK  LS EF MKDLG A+KIL +EI R+   VH  L QK Y++KVL +FN
Sbjct: 1583 AANNITEINILKKLLSKEFDMKDLGVAKKILGMEISRENGVVH--LSQKRYIRKVLERFN 1640

Query: 462  I 460
            +
Sbjct: 1641 M 1641



 Score =  117 bits (292), Expect(3) = 1e-66
 Identities = 65/140 (46%), Positives = 95/140 (67%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +FKLS +  P++++E E+ +++ YASAVGS+MYAM  TRP+I Q +S+VS+YM
Sbjct: 1647 VSTPLASHFKLSELQMPQSMDEVEHMSKVPYASAVGSIMYAMVCTRPDIAQSVSVVSKYM 1706

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK H +AVKWI+  ++G  DVGL + +          YVDSD   D+D+ +STT Y+
Sbjct: 1707 ANPGKRHWEAVKWILRYLKGAPDVGLTFRKS--EGISILGYVDSDYAGDLDRRRSTTGYI 1764

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FTL    ++ + TLQS VAL
Sbjct: 1765 FTLVGSAVSWKSTLQSIVAL 1784



 Score = 62.0 bits (149), Expect(3) = 1e-66
 Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            +KARLVAK +++ EGID N++FSP+VKHSSI +           L+Q DVK  FLH DLE
Sbjct: 1442 FKARLVAKGFSQKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLE 1501

Query: 872  *E-FMS*PQDF 843
               +M  P+ F
Sbjct: 1502 ETIYMDQPEGF 1512


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  135 bits (339), Expect(3) = 5e-66
 Identities = 66/122 (54%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            RLKKSLYGLKQSP+QWYK+FD+FM+ +++ R+ YDS  Y K+  G  IYLLLY++DMLI+
Sbjct: 1168 RLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDMLIA 1227

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ ++ + +LK QLS+EF+MKDLG A+KIL +EI R +      L QK Y++KVL +FN+
Sbjct: 1228 AKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNM 1287

Query: 459  RN 454
             +
Sbjct: 1288 HD 1289



 Score =  106 bits (265), Expect(3) = 5e-66
 Identities = 60/140 (42%), Positives = 89/140 (63%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +F+LS  L P++  + EY +R+ Y+SAVGSLMYAM  +RP++   +S+VSRYM
Sbjct: 1293 VSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSRYM 1352

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT    L + R   G      YVDSD   D+D+ +S   YV
Sbjct: 1353 ANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDG---LVGYVDSDFAGDLDRGRSLAGYV 1409

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ + +LQ+TVAL
Sbjct: 1410 FTIGGCAVSWKASLQATVAL 1429



 Score = 60.8 bits (146), Expect(3) = 5e-66
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARL+AK Y++  GID N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 1087 YKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELE 1146

Query: 872  *E-FMS*PQDFKV 837
             + +M  P+ F V
Sbjct: 1147 EDIYMEQPKGFVV 1159


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  133 bits (335), Expect(3) = 1e-65
 Identities = 65/122 (53%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            RLKKSLYGLKQSP+QWYK+FD+FM+ +++  + YDS  Y K+  G  IYLLLY++DMLI+
Sbjct: 933  RLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGSVIYLLLYVDDMLIA 992

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ ++ + +LK QLS+EF+MKDLG A+KIL +EI R++      L QK Y++KVL +FN+
Sbjct: 993  AKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNM 1052

Query: 459  RN 454
             +
Sbjct: 1053 HD 1054



 Score =  108 bits (269), Expect(3) = 1e-65
 Identities = 61/140 (43%), Positives = 89/140 (63%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +F+LS  L P +  + EY +R+ Y+SAVGSLMYAM   RP++   +S+V+RYM
Sbjct: 1058 VSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYM 1117

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT    L +ER   G      YVDSD   D+D+ +S T YV
Sbjct: 1118 ANPGKEHWKAVQWIFRYLRGTSSACLQFERSRDG---LVGYVDSDFAGDLDRRRSITGYV 1174

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ + +LQ+TVAL
Sbjct: 1175 FTIGGCAVSWKASLQATVAL 1194



 Score = 59.7 bits (143), Expect(3) = 1e-65
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVAK Y++  GID N VFSP+VKHSSI             LEQ +VK  FLH +LE
Sbjct: 852  YKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELE 911

Query: 872  *E-FMS*PQDFKV 837
             + +M  P+ F V
Sbjct: 912  EDIYMEQPEGFVV 924


>gb|PHT40240.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Capsicum baccatum]
          Length = 1526

 Score =  135 bits (340), Expect(3) = 2e-65
 Identities = 69/123 (56%), Positives = 96/123 (78%), Gaps = 2/123 (1%)
 Frame = -3

Query: 816 RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYRKLPSGEFIYLLLYMNDMLI 640
           RLKKSLYGLKQSP+QWYK+FD+FM    Y+R+ YD+ VY++KL  G  +YLLLY++DMLI
Sbjct: 616 RLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSLVYLLLYVDDMLI 675

Query: 639 SSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFN 463
           ++R +T V++LK QL++EF MKDLG A+KIL +EI RD++     L QK Y+ K+L +F 
Sbjct: 676 AARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFG 735

Query: 462 IRN 454
           +R+
Sbjct: 736 MRD 738



 Score =  107 bits (267), Expect(3) = 2e-65
 Identities = 57/136 (41%), Positives = 88/136 (64%)
 Frame = -2

Query: 430  LALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYMHDLG 251
            LA +FKLS    P++ EE    + + Y++AVGSLMYAM  TRP++   +S+VSR+MH+ G
Sbjct: 746  LAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPG 805

Query: 250  KDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYVFTLS 71
            K H ++VKWI+  ++G+ D+GLV++R          YVD+D   D+D+ +S + Y+FTL 
Sbjct: 806  KQHWESVKWILRYLKGSPDIGLVFDRQRSDPGGVVGYVDADYGGDLDRRRSLSAYIFTLC 865

Query: 70   QVPIN*RCTLQSTVAL 23
               I+   +LQ+  AL
Sbjct: 866  GSAISWYSSLQAIAAL 881



 Score = 58.2 bits (139), Expect(3) = 2e-65
 Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKAR V + + + EGID N+VFSP+V+HSSI +           LEQ DVK  FLH +LE
Sbjct: 535  YKARFVVRGFDQQEGIDFNEVFSPVVRHSSIRVLLALVALYDLELEQLDVKTAFLHGNLE 594

Query: 872  *E-FMS*PQDFKV 837
             E ++  P+ F V
Sbjct: 595  EEIYIQQPEGFVV 607


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  125 bits (314), Expect(3) = 6e-65
 Identities = 71/140 (50%), Positives = 93/140 (66%), Gaps = 4/140 (2%)
 Frame = -3

Query: 867  VYVLTP-GFQSCNAKKM-SRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYD-SVYYR 697
            +Y+  P GF     + +  RLKKSLYGLKQSP+QWYK FDT+M++  YTR  YD  VYY 
Sbjct: 908  IYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYH 967

Query: 696  KLPSGEFIYLLLYMNDMLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEK 520
                G+ I LLLY++DMLI+ R    + +LK +L AEF MKDLG AQKIL +EI RD+  
Sbjct: 968  VFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNA 1027

Query: 519  VHANLMQKTYLQKVLHKFNI 460
                L Q+ Y+ K+L +FN+
Sbjct: 1028 GKIWLSQEKYIMKILERFNM 1047



 Score =  107 bits (266), Expect(3) = 6e-65
 Identities = 61/140 (43%), Positives = 88/140 (62%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +SI LA +F+LS    P   +E +    + YASAVG LMYAM  TRP++ Q MS+VS+YM
Sbjct: 1053 VSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYM 1112

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK H +AVKWI   ++ T  +G+++ER   G+     +VDSD   D+D+ +ST  YV
Sbjct: 1113 SNPGKRHWEAVKWIFKYLKNTRQLGIMFER-RQGEACVAGFVDSDFAGDLDRRRSTAGYV 1171

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT    P++ + TLQ+  AL
Sbjct: 1172 FTCGGGPVSWKATLQAVTAL 1191



 Score = 66.6 bits (161), Expect(3) = 6e-65
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
 Frame = -1

Query: 1064 DLTVCYKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFL 888
            D  + YKARLVAK Y++ EG+D +++FSP+VKH+SI +           +EQ DVK  FL
Sbjct: 841  DDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFL 900

Query: 887  HDDLE*E-FMS*PQDF 843
            H DLE + +MS P+ F
Sbjct: 901  HGDLEEDIYMSQPEGF 916


>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 502

 Score =  127 bits (318), Expect(3) = 6e-65
 Identities = 67/121 (55%), Positives = 88/121 (72%), Gaps = 2/121 (1%)
 Frame = -3

Query: 816 RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYD-SVYYRKLPSGEFIYLLLYMNDMLI 640
           RL+KSLYGLKQSP+QWYK+FDT+M++  YTR LYD  VYY     GE I LLLY++DMLI
Sbjct: 127 RLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLLLYVDDMLI 186

Query: 639 SSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFN 463
           + +  + + ELK +L AEF MKDLG AQ IL +EI RD++     L Q+ Y+ +VL +FN
Sbjct: 187 ACKDMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDRKAGKIWLSQEKYILRVLERFN 246

Query: 462 I 460
           +
Sbjct: 247 M 247



 Score =  107 bits (266), Expect(3) = 6e-65
 Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
 Frame = -2

Query: 442 LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
           +SI LA +++LS    P + +E +    + YASAVG LMYAM  TRP++ Q +S+VS+YM
Sbjct: 253 VSIPLAAHYQLSAKQRPSSQKEIDAMKDVPYASAVGCLMYAMICTRPDLAQALSVVSKYM 312

Query: 262 HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTR-YVDSDCTVDMDKCQSTTCY 86
            + GK H +AVKWI+  ++GT  +G+++ER    +  C   +VD+D   D+DK +STT Y
Sbjct: 313 SNPGKPHWEAVKWILRYLKGTRQLGIMFERKQ--EVACVAGFVDADYAGDLDKRRSTTGY 370

Query: 85  VFTLSQVPIN*RCTLQSTVAL 23
           VFT    P++ + TLQ+  AL
Sbjct: 371 VFTCGGGPVSWKSTLQAVTAL 391



 Score = 65.1 bits (157), Expect(3) = 6e-65
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVAK Y++ EG+D +++FSP+VKH+SI +           +EQ DVK  FLH DLE
Sbjct: 46   YKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLE 105

Query: 872  *E-FMS*PQDF 843
             + +MS P+ F
Sbjct: 106  EDIYMSQPEGF 116


>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
          Length = 1170

 Score =  126 bits (316), Expect(3) = 1e-64
 Identities = 63/122 (51%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            +LK+SLYGLKQSP+QWYK+FD+FM+   + R+ +DS  Y K  +G  IYLLLY++DMLI+
Sbjct: 871  KLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPIYLLLYVDDMLIA 930

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ +  +  LK QLS+EF MKDLG A+KIL +EI RD+      L Q++Y++KVL +FN+
Sbjct: 931  AKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNM 990

Query: 459  RN 454
             +
Sbjct: 991  HD 992



 Score =  112 bits (281), Expect(3) = 1e-64
 Identities = 63/139 (45%), Positives = 87/139 (62%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS +    T E+ EY +R+ Y+SAVGSLMYAM  +RP++   MS+VSRYM
Sbjct: 996  VSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYM 1055

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT D  L + R   G      YVDSD   D+DK +S T YV
Sbjct: 1056 ANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKG---LVGYVDSDFAADLDKRRSLTGYV 1112

Query: 82   FTLSQVPIN*RCTLQSTVA 26
            FT+    ++ + TLQ  VA
Sbjct: 1113 FTIGSCAVSWKATLQPVVA 1131



 Score = 58.9 bits (141), Expect(3) = 1e-64
 Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            +KARLVAK +++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 790  FKARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELE 849

Query: 872  *E-FMS*PQDFKV 837
             E +M  P+ F V
Sbjct: 850  EEIYMDQPEGFIV 862


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  135 bits (340), Expect(3) = 3e-64
 Identities = 66/122 (54%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            RLKKSLYGLKQSP+QWYK+FD+FM  +++ R+ YDS  Y K+  G  IYLLLY++DMLI+
Sbjct: 840  RLKKSLYGLKQSPRQWYKRFDSFMFSQKFRRSNYDSCVYLKVVDGSSIYLLLYVDDMLIA 899

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ ++ + +LK QLS+EF+MKDLG A+KIL +EI R++      L QK Y++KVL +FN+
Sbjct: 900  AKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNM 959

Query: 459  RN 454
             +
Sbjct: 960  HD 961



 Score =  100 bits (250), Expect(3) = 3e-64
 Identities = 58/140 (41%), Positives = 86/140 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +F+LS  L P++  + EY +R+ Y S VGSLMYAM  +R ++   +S+VSRYM
Sbjct: 965  VSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHALSVVSRYM 1024

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H   V+WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1025 ANPGKEHWKVVQWIFKYLRGTSSACLQFGRSRDG---LVGYVDSDFAGDLDRRRSLTGYV 1081

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ + +LQ+TVAL
Sbjct: 1082 FTIGGCAVSWKASLQATVAL 1101



 Score = 60.5 bits (145), Expect(3) = 3e-64
 Identities = 37/73 (50%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVAK Y++  GID N VFSP++KHSSI             LEQ DVK  FLH +LE
Sbjct: 759  YKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYELEQMDVKTAFLHGELE 818

Query: 872  *E-FMS*PQDFKV 837
             + +M  P+ F V
Sbjct: 819  EDIYMEQPEGFVV 831


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score =  124 bits (312), Expect(3) = 5e-64
 Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
 Frame = -3

Query: 828  KKMSRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMND 649
            K + +LK+SLYGLKQSP+QW K+FD+FM+   + R+ YDS  Y K  +G  IYLLLY++D
Sbjct: 960  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDD 1019

Query: 648  MLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLH 472
            MLI+++ +  + +LK  LS+EF MKDLG A+KIL +EI RD++     L Q  Y++KVL 
Sbjct: 1020 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQ 1079

Query: 471  KFNIRN 454
            +FN++N
Sbjct: 1080 RFNMQN 1085



 Score =  110 bits (276), Expect(3) = 5e-64
 Identities = 64/140 (45%), Positives = 87/140 (62%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS    P T  E EY +R+ Y+SAVGSLMYAM  +RP++   MS+VSRYM
Sbjct: 1089 VSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYM 1148

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  A++WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1149 SNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKG---LIGYVDSDYAADLDRRRSLTGYV 1205

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ R TLQS VAL
Sbjct: 1206 FTIGSCAVSWRATLQSVVAL 1225



 Score = 60.5 bits (145), Expect(3) = 5e-64
 Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVA+ Y++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 883  YKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELE 942

Query: 872  *E-FMS*PQDFKVVMQKK 822
             + +M  P+ F V  ++K
Sbjct: 943  EDIYMDQPEGFIVPGKEK 960


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  142 bits (358), Expect(2) = 8e-64
 Identities = 76/144 (52%), Positives = 107/144 (74%), Gaps = 4/144 (2%)
 Frame = -3

Query: 867  VYVLTP-GFQSCNAKKM-SRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDS-VYYR 697
            +Y+  P GF+    + M  +L+KSLYGLKQSP+QWYK+FD FM+ ++YTR+ YD  VY R
Sbjct: 705  IYMTQPEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYLR 764

Query: 696  KLPSGEFIYLLLYMNDMLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEK 520
            KL  G FIYLLLY++DMLI+S+ +  + +LKTQL+ EF+MKDLG A+KIL +EI RD++ 
Sbjct: 765  KLHDGSFIYLLLYVDDMLIASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRKL 824

Query: 519  VHANLMQKTYLQKVLHKFNIRNDT 448
                L QK YL++VL +F I +++
Sbjct: 825  GRLCLTQKEYLKRVLKRFGISDES 848



 Score =  131 bits (330), Expect(2) = 8e-64
 Identities = 73/140 (52%), Positives = 96/140 (68%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  LA +FKLS  L P+   E  Y +++ YASAVGSLMYAM  TRP+I   + +VSRYM
Sbjct: 851  VSTPLASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYM 910

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
            H+ GK+H  AVKWI+  I  TVDVGLV++++  G+     Y DS+   D+D  +STT YV
Sbjct: 911  HNPGKEHWQAVKWILRYILNTVDVGLVFQQEQDGQ-NVVGYCDSNYAGDLDNRRSTTGYV 969

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FTL++ P+  R TLQSTVAL
Sbjct: 970  FTLAKAPVCWRSTLQSTVAL 989



 Score = 71.6 bits (174), Expect = 8e-10
 Identities = 43/75 (57%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
 Frame = -1

Query: 1055 VCYKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDD 879
            V YKARLVAK YA+ EGID N+VFSP+VKHSSI +           L Q DVK  FLH D
Sbjct: 641  VRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGD 700

Query: 878  LE*E-FMS*PQDFKV 837
            LE E +M+ P+ FKV
Sbjct: 701  LEEEIYMTQPEGFKV 715


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  124 bits (312), Expect(3) = 1e-63
 Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
 Frame = -3

Query: 828  KKMSRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMND 649
            K + +LK+SLYGLKQSP+QW K+FD+FM+   + R+ YDS  Y K  +G  IYLLLY++D
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDD 1017

Query: 648  MLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLH 472
            MLI+++ +  + +LK  LS+EF MKDLG A+KIL +EI RD++     L Q  Y++KVL 
Sbjct: 1018 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQ 1077

Query: 471  KFNIRN 454
            +FN++N
Sbjct: 1078 RFNMQN 1083



 Score =  109 bits (273), Expect(3) = 1e-63
 Identities = 64/140 (45%), Positives = 86/140 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS    P    E EY +R+ Y+SAVGSLMYAM  +RP++   MS+VSRYM
Sbjct: 1087 VSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYM 1146

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1147 SNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKG---LIGYVDSDYAADLDRRRSLTGYV 1203

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ R TLQS VAL
Sbjct: 1204 FTIGSCAVSWRATLQSVVAL 1223



 Score = 60.5 bits (145), Expect(3) = 1e-63
 Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVA+ Y++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 881  YKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELE 940

Query: 872  *E-FMS*PQDFKVVMQKK 822
             + +M  P+ F V  ++K
Sbjct: 941  EDIYMDQPEGFIVPGKEK 958


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  124 bits (312), Expect(3) = 1e-63
 Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
 Frame = -3

Query: 828  KKMSRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMND 649
            K + +LK+SLYGLKQSP+QW K+FD+FM+   + R+ YDS  Y K  +G  IYLLLY++D
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDD 1017

Query: 648  MLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLH 472
            MLI+++ +  + +LK  LS+EF MKDLG A+KIL +EI RD++     L Q  Y++KVL 
Sbjct: 1018 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQ 1077

Query: 471  KFNIRN 454
            +FN++N
Sbjct: 1078 RFNMQN 1083



 Score =  109 bits (273), Expect(3) = 1e-63
 Identities = 64/140 (45%), Positives = 86/140 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS    P    E EY +R+ Y+SAVGSLMYAM  +RP++   MS+VSRYM
Sbjct: 1087 VSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYM 1146

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1147 SNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKG---LIGYVDSDYAADLDRRRSLTGYV 1203

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ R TLQS VAL
Sbjct: 1204 FTIGSCAVSWRATLQSVVAL 1223



 Score = 60.5 bits (145), Expect(3) = 1e-63
 Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVA+ Y++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 881  YKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELE 940

Query: 872  *E-FMS*PQDFKVVMQKK 822
             + +M  P+ F V  ++K
Sbjct: 941  EDIYMDQPEGFIVPGKEK 958


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  124 bits (310), Expect(3) = 1e-63
 Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 1/126 (0%)
 Frame = -3

Query: 828  KKMSRLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMND 649
            K + +LK+SLYGLKQSP+QW K+FD+FM+   + R+ YDS  Y K  +G  IYLLLY++D
Sbjct: 958  KYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDD 1017

Query: 648  MLISSR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLH 472
            MLI+++ +  + +LK  LS+EF MKDLG A+KIL +EI RD++     L Q  Y++KVL 
Sbjct: 1018 MLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQ 1077

Query: 471  KFNIRN 454
            +FN++N
Sbjct: 1078 RFNMQN 1083



 Score =  110 bits (275), Expect(3) = 1e-63
 Identities = 64/140 (45%), Positives = 86/140 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS    P T  E EY +R+ Y+SAVGSLMYAM  +RP++   MS+VSRYM
Sbjct: 1087 VSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYM 1146

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H   V+WI   ++GT    L + R   G      YVDSD   D+D+ +S T YV
Sbjct: 1147 SNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKG---LIGYVDSDYAADLDRRRSLTGYV 1203

Query: 82   FTLSQVPIN*RCTLQSTVAL 23
            FT+    ++ R TLQS VAL
Sbjct: 1204 FTIGSCAVSWRATLQSVVAL 1223



 Score = 60.5 bits (145), Expect(3) = 1e-63
 Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            YKARLVA+ Y++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 881  YKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELE 940

Query: 872  *E-FMS*PQDFKVVMQKK 822
             + +M  P+ F V  ++K
Sbjct: 941  EDIYMDQPEGFIVPGKEK 958


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  126 bits (316), Expect(3) = 5e-63
 Identities = 63/122 (51%), Positives = 91/122 (74%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            +LK+SLYGLKQSP+QWYK+FD+FM+   + R+ +DS  Y K  +G  IYLLLY++DMLI+
Sbjct: 951  KLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSPIYLLLYVDDMLIA 1010

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ +  +  LK QLS+EF MKDLG A+KIL +EI RD+      L Q++Y++KVL +FN+
Sbjct: 1011 AKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNM 1070

Query: 459  RN 454
             +
Sbjct: 1071 HD 1072



 Score =  108 bits (271), Expect(3) = 5e-63
 Identities = 62/139 (44%), Positives = 86/139 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS +    T E+ EY +R+ Y+SAVGSLMYAM  + P++   MS+VSRYM
Sbjct: 1076 VSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYM 1135

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT D  L + R   G      YVDSD   D+DK +S T YV
Sbjct: 1136 ANPGKEHWKAVQWIFRYLRGTADACLKFGRIDKG---LVGYVDSDFAADLDKRRSLTGYV 1192

Query: 82   FTLSQVPIN*RCTLQSTVA 26
            FT+    ++ + TLQ  VA
Sbjct: 1193 FTIGSCAVSWKATLQPVVA 1211



 Score = 57.4 bits (137), Expect(3) = 5e-63
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            +K RLVAK +++  G+D N VFSP+VKHSSI             LEQ DVK  FLH +LE
Sbjct: 870  FKVRLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELE 929

Query: 872  *E-FMS*PQDFKV 837
             E +M  P+ F V
Sbjct: 930  EEIYMDQPEGFIV 942


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group]
 gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group]
 gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1229

 Score =  122 bits (305), Expect(3) = 3e-62
 Identities = 62/122 (50%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
 Frame = -3

Query: 816  RLKKSLYGLKQSPQQWYKQFDTFMIEKEYTRNLYDSVYYRKLPSGEFIYLLLYMNDMLIS 637
            +LK+SLYGLKQSP+QWYK+FD+FM+   + R+ +DS  Y K  +G  IYLLLY++DMLI+
Sbjct: 897  KLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVNGSHIYLLLYVDDMLIA 956

Query: 636  SR-RTTVNELKTQLSAEFKMKDLG*AQKILSVEIIRDKEKVHANLMQKTYLQKVLHKFNI 460
            ++ +  +  LK QLS+EF MKDL  ++KIL +EI RD       L Q++Y++KVL +FNI
Sbjct: 957  AKSKEQITTLKKQLSSEFDMKDLVASKKILGMEITRDINSGLLFLSQQSYIKKVLQRFNI 1016

Query: 459  RN 454
             +
Sbjct: 1017 HD 1018



 Score =  109 bits (273), Expect(3) = 3e-62
 Identities = 62/139 (44%), Positives = 85/139 (61%)
 Frame = -2

Query: 442  LSILLALNFKLSGILYPKTIEECEYTTRMSYASAVGSLMYAMAWTRPNIPQVMSMVSRYM 263
            +S  +A +FKLS +    T E+ EY +R+ Y+S VGSLMYAM  +RP +   MS+VSRYM
Sbjct: 1022 VSTPIAPHFKLSALQCTSTDEDVEYMSRVPYSSVVGSLMYAMVCSRPVLSHAMSLVSRYM 1081

Query: 262  HDLGKDH*DAVKWIM*CIQGTVDVGLVYERDYHGK*ECTRYVDSDCTVDMDKCQSTTCYV 83
             + GK+H  AV+WI   ++GT D  L + R   G      YVDSD   D+DK +S T YV
Sbjct: 1082 ANPGKEHWKAVQWIFRYLRGTADACLKFGRTDKG---LVGYVDSDFAADLDKRRSLTGYV 1138

Query: 82   FTLSQVPIN*RCTLQSTVA 26
            FT+    ++ + TLQ  VA
Sbjct: 1139 FTIGSCAVSWKATLQPVVA 1157



 Score = 58.2 bits (139), Expect(3) = 3e-62
 Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
 Frame = -1

Query: 1049 YKARLVAKEYAKSEGID-NKVFSPIVKHSSIMIXXXXXXXXXXXLEQFDVKIVFLHDDLE 873
            + ARLVAK +++  G+D N VFSP+VKHSSI             LEQ DVK +FLH +LE
Sbjct: 816  FNARLVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFCIVAMHDLELEQLDVKTIFLHGELE 875

Query: 872  *E-FMS*PQDFKV 837
             E +M  P+ F V
Sbjct: 876  EEIYMDQPEGFIV 888