BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00033397
         (580 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]           65   8e-09
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...    59   1e-06
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...    58   2e-06
gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposo...    49   3e-06
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...    57   4e-06
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...    57   5e-06

>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score = 65.1 bits (157), Expect = 8e-09
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
 Frame = +2

Query: 5    GELVGYSTSRIFDCPVYRLV---D*SKAKQTGVQV*EVYIHRIH*RSQNSKGFRLRNPET 175
            G+ +     RIF CP +  +   D SK      +   +++      S+  KGF+L +P +
Sbjct: 559  GKPIDLDNLRIFGCPTFVHISSEDRSKLDPKSKKC--IFVGY----SKGVKGFKLWDPVS 612

Query: 176  KGVFTYKNAVFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFT-----------EDP 322
            K +   ++ VFDE  +L+   +TEV    G    S+  +V +VE             + P
Sbjct: 613  KKMVLSRDVVFDEQFMLKQSRETEVTESAGG---SSGKEVIQVELEPTPNKNTSAVHQQP 669

Query: 323  KWPDGSNEDFSTTGGDEQETTQMQSGPLTLRWSNRISAPPTRYGW*DHVLFALVTEAWYL 502
              P   N D + +GG  +++  +    L      R   PP RYG+ D   +AL+T +   
Sbjct: 670  PEPTPINHDTADSGGASEDSVGVDDYQLARDRERRSINPPQRYGFEDLAAYALLTSSGDP 729

Query: 503  CSYKKVIEVDDNNKWITIMEHEIDSL 580
             ++++ I   + +KW+  M  E++SL
Sbjct: 730  STFREAIVSQEKDKWMGAMMEEMESL 755


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 11/203 (5%)
 Frame = +2

Query: 5    GELVGYSTSRIFDCPVYRLVD*SKAKQTGVQV*EVYIHRIH*RSQNSKGFRLRNPETKGV 184
            G+   YS  + F C  Y  V   K +    +   V++          KGFR+ +P  K V
Sbjct: 629  GKAADYSNLKAFGCTAYYHVSEGKLEPRAKK--GVFVGY----GDGVKGFRIWSPAEKRV 682

Query: 185  FTYKNAVFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPKWPDGSNEDFSTTG 364
               +N VFDE+ LL+   K    +  G+ D     QV  ++   D K P+  +++  T  
Sbjct: 683  IMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQV--IQNESDLKEPEEEDQEPQT-- 738

Query: 365  GDEQETTQMQSGPLTLRWS------NRISA-PPTRYGW*DHVLFAL----VTEAWYLCSY 511
                ET   +S P  +  S       R+   PPTRYG+ D V +AL      +     +Y
Sbjct: 739  ----ETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTY 794

Query: 512  KKVIEVDDNNKWITIMEHEIDSL 580
            K+ I   D+ KW   M  E++SL
Sbjct: 795  KEAILSSDSEKWFAAMGDEMESL 817


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 6/198 (3%)
 Frame = +2

Query: 5    GELVGYSTSRIFDCPVYRLVD*SKAKQTGVQV*EVYIHRIH*RSQNSKGFRLRNPETKGV 184
            G    YS  R+F C  Y  V+  K +   ++   +++          KG++L NPET   
Sbjct: 539  GMPANYSQLRVFGCTAYAHVNNGKLEPRAIKC--LFLGY----GSGVKGYKLWNPETNKT 592

Query: 185  FTYKNAVFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTEDPKWPDGSNEDFSTTG 364
            F  ++ VF+E+ +  D   T+V    G  D        +VE  +D K     N D + T 
Sbjct: 593  FMSRSVVFNESVMFNDSLPTDVIP--GGFDEEQQYVSVQVEHVDDQKTEIVGN-DVNDTV 649

Query: 365  GDEQETTQMQSGPLTLRWSNRISAPPTR-YGW*DHVLFAL-----VTEAWYLCSYKKVIE 526
                   Q Q  P+  R + R    P R     D V +A      V     L +Y +V+ 
Sbjct: 650  QHSPPVLQPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFICAEQVENTLELATYTEVVV 709

Query: 527  VDDNNKWITIMEHEIDSL 580
              D  KWI+ M+ E+ SL
Sbjct: 710  SGDREKWISAMQEEMQSL 727


>gb|PKU72844.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dendrobium catenatum]
          Length = 993

 Score = 49.3 bits (116), Expect(2) = 3e-06
 Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
 Frame = +2

Query: 146  KGFRLRNPETKGVFTY--KNAVFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEFTED 319
            KG+RL +  + GV T   ++ +F+EN+L   +S+ +        +S +N    + E    
Sbjct: 619  KGYRLWDLSSPGVKTIISRDVIFNENRLYISESENKDTTISSIENSDSNKDYYEFEVEPP 678

Query: 320  PKWPDGSNEDFSTTGGDEQETTQMQSGPLTLRWSN--RISAPPTRYGW*DHVLFALVTEA 493
                   N   ST   +E E     +    L      R   PP++YG+ + + +AL++  
Sbjct: 679  SNTLSFENPQQSTEPENEPEPVSENNHDYLLSRDRERRNIKPPSKYGYAELIEYALLSAL 738

Query: 494  WYL----CSYKKVIEVDDNNKWITIMEHEIDSL 580
             Y      SYK+ +   D+  W+  M+ E DSL
Sbjct: 739  EYEDSEPISYKEAVSCKDSENWVKAMQDEYDSL 771



 Score = 29.6 bits (65), Expect(2) = 3e-06
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 72  QKRNKLESKSKKCIFIEFTKGVKTQKVSD 158
           Q + KLE +S KC+F+ +  GVK  ++ D
Sbjct: 597 QNKGKLEPRSIKCVFLGYPTGVKGYRLWD 625


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 595

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%)
 Frame = +2

Query: 5   GELVGYSTSRIFDCPVYRLVD*SKAKQTGVQV*EVYIHRIH*RSQNSKGFRLRNPETKGV 184
           G+   YS  R+F C  Y  V+  K      +   +            KG+R+ +P  K V
Sbjct: 264 GKPTNYSNLRVFGCNAYYHVNEGKLLPRSRKCLFMGY------GDGVKGYRIWSPSEKKV 317

Query: 185 FTYKNAVFDENKLLQDKSKTEV*A*GGAPDSSANSQVKKVEF----TED----PKWPDGS 340
              ++ +FDE+ L   K +  +     A  +S   QV KVE     TED     K+ + S
Sbjct: 318 ILSRDVIFDESHLFHPKLEVPI----TATHNSHPPQVGKVESISEKTEDKDLLDKFSEAS 373

Query: 341 NEDFSTTGGDEQETTQ------MQSGPLTLRWSNRISAPPTRYGW*DHVLFAL----VTE 490
            E+  +      E+ Q      +Q  P   +   R+  PP RYG+ D   +AL      +
Sbjct: 374 QEEEQSENSSANESHQNAEPDSIQLNPGISQKPKRVIKPPERYGFEDMATYALHAAEEID 433

Query: 491 AWYLCSYKKVIEVDDNNKWITIMEHEIDSL 580
           +    +YK+ I   +  KWI  M  E++SL
Sbjct: 434 SDEPTTYKEAISHPEAEKWILAMREEMESL 463


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score = 57.0 bits (136), Expect = 5e-06
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 4/196 (2%)
 Frame = +2

Query: 5    GELVGYSTSRIFDCPVYRLVD*SKAKQTGVQV*EVYIHRIH*RSQNSKGFRLRNPETKGV 184
            G+   Y   ++F C  +  +   +  +   +V E    R     ++  GFRL +P  K +
Sbjct: 633  GKKAYYGHLKVFGCRAFVHIPKDERTKLDAKVKECIYLR---SPKDELGFRLWDPVNKKI 689

Query: 185  FTYKNAVFDENKLLQDKSKTEV*A*GGAPDSSA----NSQVKKVEFTEDPKWPDGSNEDF 352
               ++ +F E++ +QD  K E        DSS     NS  +  +  ++P   +    + 
Sbjct: 690  VRSRDVIFFEDQTIQDIKKPEKPKQKEVQDSSPIVINNSGGEISQRIDEPNQTEQPESEQ 749

Query: 353  STTGGDEQETTQMQSGPLTLRWSNRISAPPTRYGW*DHVLFALVTEAWYLCSYKKVIEVD 532
            S T  +EQ  T  +     +R S R+  P  RY   D+V    +T+     S+ + IE++
Sbjct: 750  SQTMQEEQMETNQEEQEPEVRRSMRVRQPSKRYFSDDYV---NLTDEGEPQSFIEAIEMN 806

Query: 533  DNNKWITIMEHEIDSL 580
            D  KW+  ME E+ SL
Sbjct: 807  DKEKWLQAMEEELQSL 822