BLASTX nr result
ID: Ophiopogon27_contig00032792
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00032792
(697 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo... 84 2e-28
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 84 2e-28
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 82 4e-28
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 82 4e-28
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo... 82 4e-28
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ... 83 1e-27
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 75 4e-27
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 79 7e-26
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 79 7e-26
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 79 7e-26
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 76 5e-25
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 76 2e-24
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 76 2e-24
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 79 5e-24
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group] 77 8e-24
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 80 2e-23
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 71 2e-23
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 73 3e-23
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa] 71 4e-23
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 71 2e-22
>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 83.6 bits (205), Expect(3) = 2e-28
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 550 NGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLRTAGLAKSF 608
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++WSGK +NY L +FGCP Y M+ ++
Sbjct: 609 WAEAVKTACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYVMYNSQERTKLD 667
Query: 567 QKS 575
KS
Sbjct: 668 PKS 670
Score = 55.8 bits (133), Expect(3) = 2e-28
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE T ++
Sbjct: 484 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Score = 35.4 bits (80), Expect(3) = 2e-28
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
P +R +FLG+ + + GY+L D K+V+SR V F ET
Sbjct: 668 PKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 706
>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 83.6 bits (205), Expect(3) = 2e-28
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 501 NGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLRTAGLAKSF 559
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++WSGK +NY L +FGCP Y M+ ++
Sbjct: 560 WAEAVKTACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYVMYNSQERTKLD 618
Query: 567 QKS 575
KS
Sbjct: 619 PKS 621
Score = 55.8 bits (133), Expect(3) = 2e-28
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE T ++
Sbjct: 435 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Score = 35.4 bits (80), Expect(3) = 2e-28
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
P +R +FLG+ + + GY+L D K+V+SR V F ET
Sbjct: 619 PKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657
>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 82.4 bits (202), Expect(3) = 4e-28
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 550 NGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLRTAGLAKSF 608
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++W+GK +NY L +FGCP Y M+ ++
Sbjct: 609 WAEAVKTACYLINRSPSTAIGLKTPMEMWNGK-PSNYSSLHVFGCPVYVMYNSQERTKLD 667
Query: 567 QKS 575
KS
Sbjct: 668 PKS 670
Score = 55.8 bits (133), Expect(3) = 4e-28
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE T ++
Sbjct: 484 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Score = 35.4 bits (80), Expect(3) = 4e-28
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
P +R +FLG+ + + GY+L D K+V+SR V F ET
Sbjct: 668 PKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 706
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 82.4 bits (202), Expect(3) = 4e-28
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 501 NGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLRTAGLAKSF 559
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++W+GK +NY L +FGCP Y M+ ++
Sbjct: 560 WAEAVKTACYLINRSPSTAIGLKTPMEMWNGK-PSNYSSLHVFGCPVYVMYNSQERTKLD 618
Query: 567 QKS 575
KS
Sbjct: 619 PKS 621
Score = 55.8 bits (133), Expect(3) = 4e-28
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE T ++
Sbjct: 435 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Score = 35.4 bits (80), Expect(3) = 4e-28
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
P +R +FLG+ + + GY+L D K+V+SR V F ET
Sbjct: 619 PKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657
>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1256
Score = 82.4 bits (202), Expect(3) = 4e-28
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 501 NGGEYIDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLRTAGLAKSF 559
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++W+GK +NY L +FGCP Y M+ ++
Sbjct: 560 WAEAVKTACYLINRSPSTAIGLKTPMEMWNGK-PSNYSSLHVFGCPVYVMYNSQERTKLD 618
Query: 567 QKS 575
KS
Sbjct: 619 PKS 621
Score = 55.8 bits (133), Expect(3) = 4e-28
Identities = 23/60 (38%), Positives = 41/60 (68%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE T ++
Sbjct: 435 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Score = 35.4 bits (80), Expect(3) = 4e-28
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
P +R +FLG+ + + GY+L D K+V+SR V F ET
Sbjct: 619 PKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAET 657
>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
Length = 473
Score = 82.8 bits (203), Expect(3) = 1e-27
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Frame = +3
Query: 219 NIGKIRSGD----CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHM 386
N G+ GD C E IK F + GVA++MNR LL+ R +L ++ + +
Sbjct: 163 NGGEYTDGDFLAFCKQEGIKRQFTVAHTPQQ-NGVAERMNRTLLERTRAMLKTTGLAKSF 221
Query: 387 WAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAYQMHKGCQQWSKQ 566
WAE + AC+LI R P+ AIG TP+++W GK A +Y L +FGCP Y M+ ++
Sbjct: 222 WAEAVKTACYLINRSPSTAIGVKTPMEMWKGKPA-DYSSLHVFGCPVYVMYNSQERTKLD 280
Query: 567 QKS 575
KS
Sbjct: 281 PKS 283
Score = 55.8 bits (133), Expect(3) = 1e-27
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQT 171
+H DVWE + S+GG ++FVSF+DD+SR W+ + ++ +V +FK+++ VE +T
Sbjct: 97 IHSDVWE-SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELET 152
Score = 33.5 bits (75), Expect(3) = 1e-27
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGE 669
P +R +FLG+ + + GY+L D KI++SR V F E
Sbjct: 281 PKSRKCIFLGYADNVKGYRLWDPTAHKIIVSRDVVFAE 318
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 75.1 bits (183), Expect(3) = 4e-27
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = +3
Query: 246 CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMYACHLIT 425
C V I H +R GVA++MNR LL+ R +L +K+ + WA+ + A H++
Sbjct: 1146 CKVHGIARHKTVRHTPQQ-NGVAERMNRTLLEKARCMLLQAKMSKVFWAKAVHTASHIVN 1204
Query: 426 RLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
R PA+AI TP ++WSG+ +NY LRIFGCP Y
Sbjct: 1205 RSPASAIDFKTPNEVWSGE-PSNYSYLRIFGCPTY 1238
Score = 63.5 bits (153), Expect(3) = 4e-27
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
+H D+W P+K S GG R+ ++F+DD SR W+ + +G+ E FK+W+ VE Q RK
Sbjct: 1066 IHSDLWGPSKLPSKGGKRYLLTFIDDFSRKVWVRFLKTKGDAFEAFKEWKILVENQIERK 1125
Score = 31.6 bits (70), Expect(3) = 4e-27
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 559 PSNRSLVFLGF-ERILGYKL*DSKKIKIVMSRAVTFGETS 675
P ++ +F+G+ + + GYKL +K V+SR VTF E+S
Sbjct: 1248 PRSKKAIFVGYVDGVKGYKLWCLSLLKFVVSRDVTFDESS 1287
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 79.0 bits (193), Expect(3) = 7e-26
Identities = 43/101 (42%), Positives = 60/101 (59%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R LLS++ + + WAE +
Sbjct: 776 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVST 834
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WSG A NY LR+FGC AY
Sbjct: 835 ACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAY 874
Score = 61.6 bits (148), Expect(3) = 7e-26
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 702 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 761
Score = 25.4 bits (54), Expect(3) = 7e-26
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 890 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHES 922
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 79.0 bits (193), Expect(3) = 7e-26
Identities = 43/101 (42%), Positives = 60/101 (59%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R LLS++ + + WAE +
Sbjct: 569 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVST 627
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WSG A NY LR+FGC AY
Sbjct: 628 ACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAY 667
Score = 61.6 bits (148), Expect(3) = 7e-26
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 495 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 554
Score = 25.4 bits (54), Expect(3) = 7e-26
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 683 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHES 715
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 79.0 bits (193), Expect(3) = 7e-26
Identities = 42/101 (41%), Positives = 60/101 (59%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 478 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRTIISKARCMLSNASLPKQFWAEAVST 536
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WSG A NY LR+FGC AY
Sbjct: 537 ACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAY 576
Score = 61.6 bits (148), Expect(3) = 7e-26
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 404 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 463
Score = 25.4 bits (54), Expect(3) = 7e-26
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 592 IFLGYLSGVKGYKLWCPETKKVVISRNVVFHES 624
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 76.3 bits (186), Expect(3) = 5e-25
Identities = 42/101 (41%), Positives = 59/101 (58%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 530 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVST 588
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI +WSG A NY LR+FGC AY
Sbjct: 589 ACYLINRSPSYAIDKKTPIKVWSGSPA-NYSDLRVFGCIAY 628
Score = 61.6 bits (148), Expect(3) = 5e-25
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 456 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 515
Score = 25.4 bits (54), Expect(3) = 5e-25
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 644 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHES 676
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 75.9 bits (185), Expect(3) = 2e-24
Identities = 41/101 (40%), Positives = 58/101 (57%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 554 KIFKSYCKSEGIMRHYTVPHTPQQ-NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVST 612
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P AI + TPI +WSG A NY L++FGC AY
Sbjct: 613 ACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAY 652
Score = 58.9 bits (141), Expect(3) = 2e-24
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ V+D+SR W + + + +FK+W+ VE QT RK
Sbjct: 480 VHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERK 539
Score = 26.2 bits (56), Expect(3) = 2e-24
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
P +FLG+ + GYKL + K+V+SR V F E+
Sbjct: 662 PRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHES 700
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 75.9 bits (185), Expect(3) = 2e-24
Identities = 41/101 (40%), Positives = 58/101 (57%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 386 KIFKSYCKSEGIMRHYTVPHTPQQ-NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVST 444
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P AI + TPI +WSG A NY L++FGC AY
Sbjct: 445 ACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAY 484
Score = 58.9 bits (141), Expect(3) = 2e-24
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ V+D+SR W + + + +FK+W+ VE QT RK
Sbjct: 312 VHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERK 371
Score = 26.2 bits (56), Expect(3) = 2e-24
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 559 PSNRSLVFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
P +FLG+ + GYKL + K+V+SR V F E+
Sbjct: 494 PRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHES 532
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1175
Score = 78.6 bits (192), Expect(3) = 5e-24
Identities = 39/95 (41%), Positives = 58/95 (61%)
Frame = +3
Query: 246 CLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMYACHLIT 425
C E I MH + GVA++MNR ++ R +LS++++ + WAE AC+LI
Sbjct: 463 CRKEGIVMHHTIPYTPQQ-NGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLIN 521
Query: 426 RLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
R P+ ++ + TPI++WSG A NY LR+FGC AY
Sbjct: 522 RSPSISLNKKTPIEVWSGMPA-NYSQLRVFGCTAY 555
Score = 55.1 bits (131), Expect(3) = 5e-24
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P++ S+GG R+ ++ +DD+SR W + + + FK+W+ ++ QT ++
Sbjct: 383 VHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKE 442
Score = 26.2 bits (56), Expect(3) = 5e-24
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + + K MSR+V F E+
Sbjct: 571 LFLGYGSGVKGYKLWNPETNKTFMSRSVVFNES 603
>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
Length = 778
Score = 77.4 bits (189), Expect(2) = 8e-24
Identities = 41/101 (40%), Positives = 60/101 (59%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 535 KIFKSYCKSEGIVRHYTIPHTPQQ-NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVST 593
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WSG + NY LR+FGC AY
Sbjct: 594 ACYLINRSPSYAIDKKTPIEVWSG-SPVNYSDLRVFGCTAY 633
Score = 61.6 bits (148), Expect(2) = 8e-24
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 461 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 520
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 80.5 bits (197), Expect(2) = 2e-23
Identities = 56/162 (34%), Positives = 80/162 (49%), Gaps = 26/162 (16%)
Frame = +3
Query: 177 EKFRDFNLIMLVS*N----IGKIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKM 344
E DF L L + N K+ C IK H +R G+A++MNR L+
Sbjct: 538 ENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQ-NGLAERMNRTLVDK 596
Query: 345 IRDLLSSSKVERHMWAETLMYACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCP 524
R +L +SK+ R WAE + A +L+ R P++AIG TP ++W+GK A NY+ LR+FGCP
Sbjct: 597 TRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPA-NYQNLRVFGCP 655
Query: 525 AYQMH----------------------KGCQQWSKQQKSCVL 584
AY +H KG + W K Q C++
Sbjct: 656 AY-LHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIV 696
Score = 57.0 bits (136), Expect(2) = 2e-23
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 4 HMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQT 171
H+D W P + S+ G R+F+S +DD+SR WI I+ + + LE FK W+ VE Q+
Sbjct: 486 HIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQS 541
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 70.9 bits (172), Expect(3) = 2e-23
Identities = 40/101 (39%), Positives = 59/101 (58%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 569 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRIIISKARCMLSNAGLPKQFWAEAVST 627
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ A + TPI++WSG A NY L++FGC AY
Sbjct: 628 ACYLINRSPSYA-NKKTPIEVWSGSPA-NYSDLKVFGCTAY 666
Score = 60.8 bits (146), Expect(3) = 2e-23
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W P + S GG R+ ++ VDD+SR W + + + +FK+W+ VE QT RK
Sbjct: 495 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERK 554
Score = 25.8 bits (55), Expect(3) = 2e-23
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGF-ERILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 682 IFLGYPSSVKGYKLWCPETKKVVISRNVVFHES 714
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 73.2 bits (178), Expect(2) = 3e-23
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = +3
Query: 306 GVAKQMNRALLKMIRDLLSSSKVERHMWAETLMYACHLITRLPAAAIGESTPIDIWSGKA 485
GVA++MN+ LL+ R +LS++ ++R WAE + AC+LI R P I TP+++WSGKA
Sbjct: 572 GVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKA 631
Query: 486 ATNYRLLRIFGCPAY 530
A +Y L+ FGC AY
Sbjct: 632 A-DYSNLKAFGCTAY 645
Score = 63.9 bits (154), Expect(2) = 3e-23
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQT--- 171
+H D W P + S+GG R+FVS +DD+SR W+ +M + E + FK+W+ +E QT
Sbjct: 473 IHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKK 532
Query: 172 -RRKNSETSI**CW 210
+R ++ + CW
Sbjct: 533 IKRLRTDNGLEFCW 546
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa]
Length = 1009
Score = 71.2 bits (173), Expect(3) = 4e-23
Identities = 39/101 (38%), Positives = 57/101 (56%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++MNR ++ R +LS++ + + WAE +
Sbjct: 390 KIFKSYCKSEGIVRHYTVPHTPQQ-NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVST 448
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WS A Y LR+F C AY
Sbjct: 449 ACYLINRSPSYAIDKKTPIEVWSSSPA-KYSDLRVFSCTAY 488
Score = 61.2 bits (147), Expect(3) = 4e-23
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH D+W PT S GG R+ ++ +DD+SR W + + + ++FK+W+ VE QT RK
Sbjct: 316 VHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 375
Score = 24.3 bits (51), Expect(3) = 4e-23
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V++R V F E+
Sbjct: 504 IFLGYPSGVKGYKLWCPETKKVVINRNVVFHES 536
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92543.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1170
Score = 70.9 bits (172), Expect(3) = 2e-22
Identities = 40/101 (39%), Positives = 56/101 (55%)
Frame = +3
Query: 228 KIRSGDCLVEDIKMHFGLR*ANMW*QGVAKQMNRALLKMIRDLLSSSKVERHMWAETLMY 407
KI C E I H+ + GVA++M R ++ R +L + + WAE +
Sbjct: 604 KIFKSYCKCEGIVRHYTVPHTPQQ-NGVAERMKRTIISKSRCMLPYVGLPKQFWAEAVST 662
Query: 408 ACHLITRLPAAAIGESTPIDIWSGKAATNYRLLRIFGCPAY 530
AC+LI R P+ AI + TPI++WSG A NY LR+FGC AY
Sbjct: 663 ACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCIAY 702
Score = 57.8 bits (138), Expect(3) = 2e-22
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +1
Query: 1 VHMDVWEPTKSASIGGHRWFVSFVDDHSRYCWIAIMSRRGEVLEIFKKWRKCVEAQTRRK 180
VH ++W P + S GG R+ ++ VDD+SR W + + + ++FK+W+ V+ QT RK
Sbjct: 530 VHSNLWGPARKTSFGGARYMMTTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERK 589
Score = 25.4 bits (54), Expect(3) = 2e-22
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 577 VFLGFER-ILGYKL*DSKKIKIVMSRAVTFGET 672
+FLG+ + GYKL + K+V+SR V F E+
Sbjct: 718 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHES 750