BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00031359
         (415 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011074352.1| polyadenylation and cleavage factor homolog ...    70   2e-11
ref|XP_011074351.1| polyadenylation and cleavage factor homolog ...    70   2e-11
ref|XP_011074350.1| polyadenylation and cleavage factor homolog ...    70   2e-11
gb|KMZ58597.1| hypothetical protein ZOSMA_75G00300 [Zostera marina]    69   1e-10
ref|XP_010538701.1| PREDICTED: polyadenylation and cleavage fact...    67   5e-10
ref|XP_010538692.1| PREDICTED: polyadenylation and cleavage fact...    67   5e-10
ref|XP_010538686.1| PREDICTED: polyadenylation and cleavage fact...    67   5e-10
ref|XP_010538677.1| PREDICTED: polyadenylation and cleavage fact...    67   5e-10
gb|PIN12436.1| mRNA cleavage and polyadenylation factor I/II com...    66   7e-10
ref|XP_023904559.1| polyadenylation and cleavage factor homolog ...    66   7e-10
dbj|GAV85191.1| CTD_bind domain-containing protein [Cephalotus f...    65   1e-09
ref|XP_022864102.1| polyadenylation and cleavage factor homolog ...    65   2e-09
ref|XP_022864101.1| polyadenylation and cleavage factor homolog ...    65   2e-09
gb|PKI64725.1| hypothetical protein CRG98_014857 [Punica granatum]     64   3e-09
gb|OWM83489.1| hypothetical protein CDL15_Pgr012970 [Punica gran...    64   6e-09
ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage fact...    64   6e-09
ref|XP_019173655.1| PREDICTED: polyadenylation and cleavage fact...    63   1e-08
ref|XP_019173654.1| PREDICTED: polyadenylation and cleavage fact...    63   1e-08
ref|XP_009340950.1| PREDICTED: polyadenylation and cleavage fact...    62   3e-08
ref|XP_022036926.1| polyadenylation and cleavage factor homolog ...    62   3e-08

>ref|XP_011074352.1| polyadenylation and cleavage factor homolog 4 isoform X3 [Sesamum
           indicum]
          Length = 940

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 6/81 (7%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           P++ DRF A V+E ++       GP+GT EI  L+   L ELT NSKP+I +LT IA   
Sbjct: 36  PSILDRFRAMVKEREEELRAFGGGPLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQ 95

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           + H +GIA+AI  RI+EVP++
Sbjct: 96  RAHGEGIADAICARIIEVPID 116


>ref|XP_011074351.1| polyadenylation and cleavage factor homolog 4 isoform X2 [Sesamum
           indicum]
          Length = 964

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 6/81 (7%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           P++ DRF A V+E ++       GP+GT EI  L+   L ELT NSKP+I +LT IA   
Sbjct: 36  PSILDRFRAMVKEREEELRAFGGGPLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQ 95

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           + H +GIA+AI  RI+EVP++
Sbjct: 96  RAHGEGIADAICARIIEVPID 116


>ref|XP_011074350.1| polyadenylation and cleavage factor homolog 4 isoform X1 [Sesamum
           indicum]
          Length = 967

 Score = 70.5 bits (171), Expect = 2e-11
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 6/81 (7%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           P++ DRF A V+E ++       GP+GT EI  L+   L ELT NSKP+I +LT IA   
Sbjct: 36  PSILDRFRAMVKEREEELRAFGGGPLGTDEIVRLYEILLSELTINSKPIITDLTIIAGDQ 95

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           + H +GIA+AI  RI+EVP++
Sbjct: 96  RAHGEGIADAICARIIEVPID 116


>gb|KMZ58597.1| hypothetical protein ZOSMA_75G00300 [Zostera marina]
          Length = 862

 Score = 68.6 bits (166), Expect = 1e-10
 Identities = 38/74 (51%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = +2

Query: 197 LRDRFDAKVEEMKQR-GPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKYKDHVDGI 373
           L DRF   ++E ++  G V   EI +L+ DFL EL  NSKP+I ELT IA + + H  GI
Sbjct: 16  LLDRFRETIKEKEEEFGVVDGDEIVALYEDFLEELILNSKPIITELTIIAGEQRQHARGI 75

Query: 374 ANAILDRIVEVPVE 415
           A AI  RI+EVPVE
Sbjct: 76  AEAICSRIIEVPVE 89


>ref|XP_010538701.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X4
           [Tarenaya hassleriana]
          Length = 741

 Score = 66.6 bits (161), Expect = 5e-10
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR----------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAI 340
           P+L DRF A + + ++            P+ T EI  L+   L ELT NSKP+I +LT I
Sbjct: 34  PSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVLAELTFNSKPIITDLTII 93

Query: 341 AAKYKDHVDGIANAILDRIVEVPVE 415
           A + ++H +GIANAI  RI+EVPVE
Sbjct: 94  AGEQREHAEGIANAICARILEVPVE 118


>ref|XP_010538692.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X3
           [Tarenaya hassleriana]
          Length = 761

 Score = 66.6 bits (161), Expect = 5e-10
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR----------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAI 340
           P+L DRF A + + ++            P+ T EI  L+   L ELT NSKP+I +LT I
Sbjct: 34  PSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVLAELTFNSKPIITDLTII 93

Query: 341 AAKYKDHVDGIANAILDRIVEVPVE 415
           A + ++H +GIANAI  RI+EVPVE
Sbjct: 94  AGEQREHAEGIANAICARILEVPVE 118


>ref|XP_010538686.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X2
           [Tarenaya hassleriana]
          Length = 794

 Score = 66.6 bits (161), Expect = 5e-10
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR----------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAI 340
           P+L DRF A + + ++            P+ T EI  L+   L ELT NSKP+I +LT I
Sbjct: 34  PSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVLAELTFNSKPIITDLTII 93

Query: 341 AAKYKDHVDGIANAILDRIVEVPVE 415
           A + ++H +GIANAI  RI+EVPVE
Sbjct: 94  AGEQREHAEGIANAICARILEVPVE 118


>ref|XP_010538677.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
           [Tarenaya hassleriana]
          Length = 814

 Score = 66.6 bits (161), Expect = 5e-10
 Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 10/85 (11%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQR----------GPVGTPEITSLFGDFLLELTRNSKPLIMELTAI 340
           P+L DRF A + + ++            P+ T EI  L+   L ELT NSKP+I +LT I
Sbjct: 34  PSLLDRFRALLSQREEELNAVSGEDGVTPLRTEEIVHLYEVVLAELTFNSKPIITDLTII 93

Query: 341 AAKYKDHVDGIANAILDRIVEVPVE 415
           A + ++H +GIANAI  RI+EVPVE
Sbjct: 94  AGEQREHAEGIANAICARILEVPVE 118


>gb|PIN12436.1| mRNA cleavage and polyadenylation factor I/II complex, subunit
           Pcf11 [Handroanthus impetiginosus]
          Length = 940

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQ------RG---PVGTPEITSLFGDFLLELTRNSKPLIMELTAIA 343
           P + DRF A V+E ++      RG   P+ T EI  L+   L ELT NSKP+I +LT IA
Sbjct: 36  PLILDRFRAMVKEREEELRVFGRGAVLPLNTDEIVRLYEIMLSELTINSKPIITDLTIIA 95

Query: 344 AKYKDHVDGIANAILDRIVEVPVE 415
            + + H +GIA+AI  RI+EVPV+
Sbjct: 96  GEQRAHAEGIADAICARIIEVPVD 119


>ref|XP_023904559.1| polyadenylation and cleavage factor homolog 4-like isoform X1
           [Quercus suber]
 gb|POE45278.1| polyadenylation and cleavage factor like 4 [Quercus suber]
          Length = 1024

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 36/71 (50%), Positives = 47/71 (66%)
 Frame = +2

Query: 203 DRFDAKVEEMKQRGPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKYKDHVDGIANA 382
           D  D +++E     P  + EI  L+  FL+ELT NSKP+I +LT IA + K+H  GIANA
Sbjct: 52  DDDDDEIDESFVVPPPSSEEIVELYEMFLVELTFNSKPVITDLTIIAGEQKEHGKGIANA 111

Query: 383 ILDRIVEVPVE 415
           I  RI+EVPVE
Sbjct: 112 ICARIIEVPVE 122


>dbj|GAV85191.1| CTD_bind domain-containing protein [Cephalotus follicularis]
          Length = 1006

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
 Frame = +2

Query: 191 PALRDRFDA----KVEEMKQRG------PVGTPEITSLFGDFLLELTRNSKPLIMELTAI 340
           P + DRF A    + +E++  G      P  T EI  L+   L ELT N KP+I +LT I
Sbjct: 28  PTILDRFRALLKQREDEIRVSGDDDEVPPPSTEEIVHLYEVLLSELTFNFKPIITDLTII 87

Query: 341 AAKYKDHVDGIANAILDRIVEVPVE 415
           A   K+H DGIA AI +RIVEVPVE
Sbjct: 88  AGDQKEHADGIAEAICERIVEVPVE 112


>ref|XP_022864102.1| polyadenylation and cleavage factor homolog 4-like isoform X2 [Olea
           europaea var. sylvestris]
          Length = 899

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQRGPV------------GTPEITSLFGDFLLELTRNSKPLIMELT 334
           P + DRF   ++E +    V            GT EI  L+   L ELT NSKP+I +LT
Sbjct: 36  PLIIDRFRGMLKEREAEFSVFNNGGHDSDTNLGTEEIVRLYEIVLSELTLNSKPIITDLT 95

Query: 335 AIAAKYKDHVDGIANAILDRIVEVPVE 415
            IA + + H  GIANAI DRI+EVPVE
Sbjct: 96  MIAGQQRAHAKGIANAICDRIIEVPVE 122


>ref|XP_022864101.1| polyadenylation and cleavage factor homolog 4-like isoform X1 [Olea
           europaea var. sylvestris]
          Length = 903

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
 Frame = +2

Query: 191 PALRDRFDAKVEEMKQRGPV------------GTPEITSLFGDFLLELTRNSKPLIMELT 334
           P + DRF   ++E +    V            GT EI  L+   L ELT NSKP+I +LT
Sbjct: 36  PLIIDRFRGMLKEREAEFSVFNNGGHDSDTNLGTEEIVRLYEIVLSELTLNSKPIITDLT 95

Query: 335 AIAAKYKDHVDGIANAILDRIVEVPVE 415
            IA + + H  GIANAI DRI+EVPVE
Sbjct: 96  MIAGQQRAHAKGIANAICDRIIEVPVE 122


>gb|PKI64725.1| hypothetical protein CRG98_014857 [Punica granatum]
          Length = 257

 Score = 63.5 bits (153), Expect = 3e-09
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +2

Query: 182 EARPALRDRFDA--KVEEMKQRGPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKYK 355
           +A P++ DRF A  K+ + +   P G+ EI  ++   L ELT NSKP+I +LT IA + K
Sbjct: 33  KAPPSILDRFRALLKLRDDEGLSPPGSDEIVRIYESMLTELTFNSKPIITDLTIIAGEQK 92

Query: 356 DHVDGIANAILDRIVEVPVE 415
            + +GIA+AI  RI+E PV+
Sbjct: 93  ANGEGIADAICARIIEAPVD 112


>gb|OWM83489.1| hypothetical protein CDL15_Pgr012970 [Punica granatum]
          Length = 943

 Score = 63.5 bits (153), Expect = 6e-09
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
 Frame = +2

Query: 182 EARPALRDRFDA--KVEEMKQRGPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKYK 355
           +A P++ DRF A  K+ + +   P G+ EI  ++   L ELT NSKP+I +LT IA + K
Sbjct: 33  KAPPSILDRFRALLKLRDDEGLSPPGSDEIVRIYESMLTELTFNSKPIITDLTIIAGEQK 92

Query: 356 DHVDGIANAILDRIVEVPVE 415
            + +GIA+AI  RI+E PV+
Sbjct: 93  ANGEGIADAICARIIEAPVD 112


>ref|XP_010275998.1| PREDICTED: polyadenylation and cleavage factor homolog 4 isoform X1
           [Nelumbo nucifera]
          Length = 1071

 Score = 63.5 bits (153), Expect = 6e-09
 Identities = 38/81 (46%), Positives = 50/81 (61%)
 Frame = +2

Query: 173 EKFEARPALRDRFDAKVEEMKQRGPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           EKF A    R+  + +V +     P  T EI  L+   L ELT NSKP+I ELT IA + 
Sbjct: 51  EKFRALLKEREE-EMRVSDDDDVPPPSTEEIVRLYEVVLSELTFNSKPIITELTIIAGEQ 109

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           ++H +GIA+AI  RI+EVPVE
Sbjct: 110 REHGEGIADAICARIIEVPVE 130


>ref|XP_019173655.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
           isoform X2 [Ipomoea nil]
          Length = 978

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
 Frame = +2

Query: 185 ARPALRDRFDAKVEEMKQR-------GPVGTP---EITSLFGDFLLELTRNSKPLIMELT 334
           A P++ DRF A ++E  +        G +  P   E+  L+   L +LT NSKP+I ELT
Sbjct: 35  APPSILDRFKAMLKERDEEVRVSSEDGVISPPTMDEVVRLYEIVLSDLTFNSKPIITELT 94

Query: 335 AIAAKYKDHVDGIANAILDRIVEVPVE 415
            IA + ++H  GIANAI  RI+E PVE
Sbjct: 95  IIAGEQREHSQGIANAICSRILEAPVE 121


>ref|XP_019173654.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
           isoform X1 [Ipomoea nil]
          Length = 980

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
 Frame = +2

Query: 185 ARPALRDRFDAKVEEMKQR-------GPVGTP---EITSLFGDFLLELTRNSKPLIMELT 334
           A P++ DRF A ++E  +        G +  P   E+  L+   L +LT NSKP+I ELT
Sbjct: 35  APPSILDRFKAMLKERDEEVRVSSEDGVISPPTMDEVVRLYEIVLSDLTFNSKPIITELT 94

Query: 335 AIAAKYKDHVDGIANAILDRIVEVPVE 415
            IA + ++H  GIANAI  RI+E PVE
Sbjct: 95  IIAGEQREHSQGIANAICSRILEAPVE 121


>ref|XP_009340950.1| PREDICTED: polyadenylation and cleavage factor homolog 4-like
           isoform X4 [Pyrus x bretschneideri]
          Length = 793

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = +2

Query: 173 EKFEARPALRDRFDAKVEEMKQRGPVGTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           ++F A    R+  D +V    +  P  T EI  L+   L EL  NSKP+I +LT IA + 
Sbjct: 43  DRFRALLKQREE-DLRVSPDDEVSPPSTEEIVHLYEIVLSELIFNSKPIITDLTIIAGEQ 101

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           +DH  GIANAI  RI+EVPVE
Sbjct: 102 RDHGKGIANAICARILEVPVE 122


>ref|XP_022036926.1| polyadenylation and cleavage factor homolog 4 [Helianthus annuus]
 ref|XP_022036927.1| polyadenylation and cleavage factor homolog 4 [Helianthus annuus]
 gb|OTG23823.1| putative PCF11P-similar protein 4 [Helianthus annuus]
          Length = 886

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 10/81 (12%)
 Frame = +2

Query: 203 DRFDAKVEEMKQRGPV----------GTPEITSLFGDFLLELTRNSKPLIMELTAIAAKY 352
           DRF A ++E ++   V          GT EI  L+   L EL  NSKP+I +LT IA + 
Sbjct: 39  DRFKALLKEREEEARVSNDDLDVPLLGTGEIVELYEVVLSELVINSKPIITDLTIIAGEQ 98

Query: 353 KDHVDGIANAILDRIVEVPVE 415
           ++H +GIA+AI  RI+EVPVE
Sbjct: 99  REHGEGIADAICARIIEVPVE 119