BLASTX nr result
ID: Ophiopogon27_contig00030479
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00030479
(704 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDP17738.1| unnamed protein product [Coffea canephora] 224 1e-64
emb|CDP17739.1| unnamed protein product [Coffea canephora] 209 5e-62
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 214 3e-60
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 211 7e-60
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ... 174 5e-48
gb|AOZ57162.1| integrase, partial [Coccinia grandis] 164 6e-47
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 175 2e-46
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo... 175 2e-46
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 175 2e-46
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 174 5e-46
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo... 174 5e-46
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 174 5e-46
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 174 5e-46
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 172 1e-45
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 171 3e-45
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 171 4e-45
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 171 4e-45
gb|PRQ41023.1| putative RNA-directed DNA polymerase [Rosa chinen... 161 6e-45
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 170 8e-45
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 170 1e-44
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 224 bits (570), Expect = 1e-64
Identities = 113/232 (48%), Positives = 160/232 (68%)
Frame = +1
Query: 7 EVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILE 186
++W RLG ++ LA++G++ G + +KQ++VKFGT +H KGIL+
Sbjct: 444 KLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILD 503
Query: 187 LVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGR 366
VH DVWGP KT S+GG ++FV+F+D++SR WV M K E+L++F KWK VE QTGR
Sbjct: 504 YVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGR 563
Query: 367 KIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
KI+ L+ DN G +Y DPF+KIC + GI R FI R+ Q +G+++ MN+TL+E+VR
Sbjct: 564 KIKILRTDNGG--EYKSDPFQKICQECGIVRHFIVRKI--PQQNGVSEHMNKTLVEKVRC 619
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
++SN+G+ W EA+TYA HL+NRLP++AIG +TP+EVWSG ATDY LR
Sbjct: 620 MLSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLR 671
>emb|CDP17739.1| unnamed protein product [Coffea canephora]
Length = 435
Score = 209 bits (532), Expect = 5e-62
Identities = 107/232 (46%), Positives = 154/232 (66%)
Frame = +1
Query: 7 EVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILE 186
++W RLG ++ LA++G++ G + +KQ++VKFGT +H KGIL+
Sbjct: 52 KLWHMRLGHAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILD 111
Query: 187 LVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGR 366
VH +VWGP KT S+GG ++FV+F+D++SR WV M K EVLE+F KWK VE QTGR
Sbjct: 112 YVHSNVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGR 171
Query: 367 KIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
KI+ L+ DN G +Y DPF+KI + GI + F R+ Q +G+++ MN+TL+E+V
Sbjct: 172 KIKILRTDNGG--EYKSDPFQKIGQECGIVQHFTVRKT--PQQNGVSERMNKTLVEKVHC 227
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
++SN+ + W E +TYA HL+NRLP++AIG +TP+EVWSG TDY LR
Sbjct: 228 MLSNARLGRKFWAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLR 279
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1032
Score = 214 bits (544), Expect = 3e-60
Identities = 108/231 (46%), Positives = 151/231 (65%)
Frame = +1
Query: 7 EVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILE 186
++W RLG + L ++G++ + + K+ RVKFGT +H KGIL+
Sbjct: 207 KLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILD 266
Query: 187 LVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGR 366
VH DVWGP+KTAS+ G+H++V+FVD++SR WV M K EVL +F KWKK +E QTGR
Sbjct: 267 YVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGR 326
Query: 367 KIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
KI+ + DN G +Y DPF+K C + GI R F + + Q +G+A+ MNRTLLE+VR
Sbjct: 327 KIKHFRTDNGG--EYTSDPFKKACEESGIVRHFTVK--HTPQQNGVAERMNRTLLEKVRC 382
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
++SN+G+ W EA+ YA HL+NRLP++AIG +TP+E W G ATDY L
Sbjct: 383 MLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYDSL 433
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 211 bits (537), Expect = 7e-60
Identities = 110/231 (47%), Positives = 149/231 (64%)
Frame = +1
Query: 7 EVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILE 186
++W RLG ++ L ++G++ G + KQ+RVKFGT +H KGIL+
Sbjct: 358 KLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILD 417
Query: 187 LVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGR 366
VH DVWGP KT SIGG H+FV+FVD++SR WV M K +VLE+F KWK VE TGR
Sbjct: 418 YVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGR 477
Query: 367 KIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
KI+ LQ DN G +Y DPF +C GI R F R+ Q +G+++ MN+TL+E+V
Sbjct: 478 KIKVLQTDNGG--EYKSDPFLNVCQDCGIVRHFTVRKT--PQQNGVSERMNKTLVEKVCC 533
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
++SN+ + W EA+TYA HL+NRLP++AI +TP+EVWSG ATDY L
Sbjct: 534 MLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSL 584
>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
Length = 473
Score = 174 bits (440), Expect = 5e-48
Identities = 95/230 (41%), Positives = 140/230 (60%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W RLG ++ LA ++ + T+ + KQ R+KF V R K IL+L
Sbjct: 37 MWHYRLGHMSERGLKILADHNLLPELKTFNLPFCEHCVTSKQHRLKFAKVTARSKHILDL 96
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL+TG+
Sbjct: 97 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELETGKM 155
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 156 IKCLRTDNGGE--YTDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 211
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+W G A DY L
Sbjct: 212 LKTTGLAKSFWAEAVKTACYLINRSPSTAIGVKTPMEMWKGKPA-DYSSL 260
>gb|AOZ57162.1| integrase, partial [Coccinia grandis]
Length = 226
Score = 164 bits (415), Expect = 6e-47
Identities = 88/231 (38%), Positives = 132/231 (57%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W RLG ++ L++R ++ G + K R KF HR +G L+
Sbjct: 1 LWHMRLGHMSEKGMQILSRRDLLCGHKVQDLEFCEHCVFGKLHRRKFSKGAHRTRGTLDY 60
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H D WGP++ S+GG +F+S +D+YSR WV M K + + FK+WK +E QTG+K
Sbjct: 61 IHSDCWGPSRVESVGGSRYFMSIIDDYSRMTWVFMMKHKSDAFKNFKQWKTLIENQTGKK 120
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN ++ F + C EGI R R+ Q +G+A+ MN+TLLER R +
Sbjct: 121 IKRLRTDNG--LEFCGSEFNEFCKAEGIVRHHTVRDT--PQQNGVAERMNQTLLERARCM 176
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
+SN+G+ W EA+ AC+L+NR P+ I +TP EVWSG A DY +L+
Sbjct: 177 LSNAGLSRRFWAEAVNTACYLINRGPHTGIDCKTPYEVWSGKPA-DYSILK 226
>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 175 bits (443), Expect = 2e-46
Identities = 92/221 (41%), Positives = 140/221 (63%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W +RLG ++ LA+R ++ G+ + KQ R++F V R K IL+L
Sbjct: 375 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 434
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL TG++
Sbjct: 435 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y+ F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 494 IKCLRTDNGGE--YIDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 549
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSG 672
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+WSG
Sbjct: 550 LRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSG 590
>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 175 bits (443), Expect = 2e-46
Identities = 92/221 (41%), Positives = 140/221 (63%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W +RLG ++ LA+R ++ G+ + KQ R++F V R K IL+L
Sbjct: 424 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 483
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL TG++
Sbjct: 484 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y+ F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 543 IKCLRTDNGGE--YIDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 598
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSG 672
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+WSG
Sbjct: 599 LRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSG 639
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 175 bits (443), Expect = 2e-46
Identities = 97/234 (41%), Positives = 141/234 (60%)
Frame = +1
Query: 1 TLEVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGI 180
T +W +RLG ++ LA+R +I G+ + + KQ R+KF R K I
Sbjct: 422 TTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHI 481
Query: 181 LELVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQT 360
L+L+H DVW + SIGG +FVSF+D+YSR WV P+ +K V VFK++K VEL+T
Sbjct: 482 LDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELET 540
Query: 361 GRKIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERV 540
G++I+ L+ DN G+ Y F C +EGI R F A+ Q +G+A+ MNRTLLER
Sbjct: 541 GKRIKCLRTDNGGE--YTDGDFLAFCKQEGITRQFTV--AHTPQQNGVAERMNRTLLERT 596
Query: 541 RSLMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
R+++ +G+ + W EA AC+++NR P+ AIG +TP+E+W G DY LR
Sbjct: 597 RAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPG-DYSSLR 649
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 174 bits (440), Expect = 5e-46
Identities = 91/221 (41%), Positives = 140/221 (63%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W +RLG ++ LA+R ++ G+ + KQ R++F V R K IL+L
Sbjct: 375 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 434
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL TG++
Sbjct: 435 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y+ F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 494 IKCLRTDNGGE--YIDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 549
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSG 672
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+W+G
Sbjct: 550 LRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNG 590
>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 174 bits (440), Expect = 5e-46
Identities = 91/221 (41%), Positives = 140/221 (63%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W +RLG ++ LA+R ++ G+ + KQ R++F V R K IL+L
Sbjct: 375 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 434
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL TG++
Sbjct: 435 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 493
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y+ F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 494 IKCLRTDNGGE--YIDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 549
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSG 672
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+W+G
Sbjct: 550 LRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNG 590
>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 174 bits (440), Expect = 5e-46
Identities = 91/221 (41%), Positives = 140/221 (63%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W +RLG ++ LA+R ++ G+ + KQ R++F V R K IL+L
Sbjct: 424 MWHRRLGHMSERGLKILAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDL 483
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK++K VEL TG++
Sbjct: 484 IHSDVW-ESPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKR 542
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G+ Y+ F C +EGI+R F A+ Q +G+A+ MNRTLLER R++
Sbjct: 543 IKCLRTDNGGE--YIDGDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAM 598
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSG 672
+ +G+ + W EA+ AC+L+NR P+ AIG +TP+E+W+G
Sbjct: 599 LRTAGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNG 639
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 174 bits (440), Expect = 5e-46
Identities = 95/233 (40%), Positives = 141/233 (60%)
Frame = +1
Query: 1 TLEVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGI 180
T +W +RLG ++ L +R ++ G+ T + KQ R+KF V R K I
Sbjct: 422 TTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHI 481
Query: 181 LELVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQT 360
L+L+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK +K +EL+T
Sbjct: 482 LDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELET 540
Query: 361 GRKIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERV 540
G+KI+ L+ DN G+ YV F C +EGI R F A+ Q +G+A+ MNRTLLER
Sbjct: 541 GKKIKCLRTDNGGE--YVDGEFLAFCKQEGIVRQFTV--AHTPQQNGVAERMNRTLLERT 596
Query: 541 RSLMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
R+++ +G+ + W EA+ AC+++NR P+ AI +TP+E+W G DY L
Sbjct: 597 RAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGK-PVDYSSL 648
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 172 bits (437), Expect = 1e-45
Identities = 94/230 (40%), Positives = 139/230 (60%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W ++LG ++ L ++ +I G++ + KQ R+KF T R K +LEL
Sbjct: 415 LWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLEL 474
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
VH DVW S+GG +FVSF+D+YSR CWV P+ +K +V FK +K VEL +G+K
Sbjct: 475 VHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELDSGKK 533
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ + DN G+ Y + F C KEGI+R F A Q +G+A+ MNRTLLER R++
Sbjct: 534 IKCFRTDNGGE--YTSEEFDDFCKKEGIKRQFTV--AYTPQQNGVAERMNRTLLERTRAM 589
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
+ +G+E + W EA+ AC+L+NR P+ AI +TP+E+W+G DY L
Sbjct: 590 LRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGK-PVDYSNL 638
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 171 bits (434), Expect = 3e-45
Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 1/232 (0%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W RLG + EL +R ++DG + +R K KRVKF T VHR KGIL+
Sbjct: 428 LWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDY 487
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
VH D+WGP++ S+GG + ++ +D+YSR W + K + FK+WK +E QT ++
Sbjct: 488 VHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKE 547
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGI-RRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
++ L+ DNAG ++ D F C KEGI R IP Q +G+A+ MNRT++ + R
Sbjct: 548 VKVLRTDNAG--EFCSDAFDDYCRKEGIVRHHTIP---YTPQQNGVAERMNRTIISKARC 602
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
++SN+ + W EA AC+L+NR P+ + +TPIE+WSG A DY LR
Sbjct: 603 MLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-DYSQLR 653
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 171 bits (433), Expect = 4e-45
Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 1/232 (0%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W RLG + EL++RG++DG S + K KRVKF T H +GIL+
Sbjct: 435 LWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY 494
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
VH D+WGP + S GG + ++ VD+YSR W + K + +VFK+WK VE QT RK
Sbjct: 495 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 554
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGI-RRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
++ L+ DN ++ F+ C EGI R +P + Q +G+A+ MNRT++ + R
Sbjct: 555 VKILRTDNG--MEFCSKIFKSYCKSEGIVRHYTVP---HTPQQNGVAERMNRTIISKARC 609
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
L+SN+G+ W EA++ AC+L+NR P+ AI +TPIEVWSGS A +Y LR
Sbjct: 610 LLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLR 660
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 171 bits (433), Expect = 4e-45
Identities = 95/232 (40%), Positives = 138/232 (59%), Gaps = 1/232 (0%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W RLG + EL++RG++DG S + K KRVKF T H +GIL+
Sbjct: 642 LWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY 701
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
VH D+WGP + S GG + ++ VD+YSR W + K + +VFK+WK VE QT RK
Sbjct: 702 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 761
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGI-RRLFIPREANRKQLDGIAKSMNRTLLERVRS 546
++ L+ DN ++ F+ C EGI R +P + Q +G+A+ MNRT++ + R
Sbjct: 762 VKILRTDNG--MEFCSKIFKSYCKSEGIVRHYTVP---HTPQQNGVAERMNRTIISKARC 816
Query: 547 LMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGMLR 702
L+SN+G+ W EA++ AC+L+NR P+ AI +TPIEVWSGS A +Y LR
Sbjct: 817 LLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLR 867
>gb|PRQ41023.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 306
Score = 161 bits (408), Expect = 6e-45
Identities = 88/230 (38%), Positives = 138/230 (60%)
Frame = +1
Query: 10 VWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGILEL 189
+W ++LG ++ LA++ ++ G+ + KQ R+KF + R K ILE+
Sbjct: 2 MWHRKLGHMSERGLKILAEQKLLPGLKKVSLPFCEHCVTSKQHRLKFSSSNARSKAILEM 61
Query: 190 VHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQTGRK 369
+H DVW S+GG +FVSF+D+YSR CWV P+ K +V VFK +K VEL++ +K
Sbjct: 62 IHSDVW-QAPVLSLGGARYFVSFIDDYSRRCWVYPIKVKADVFPVFKVFKARVELESEKK 120
Query: 370 IQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERVRSL 549
I+ L+ DN G +Y + F C +EGI+R F A Q +G+A+ MNRTLLER R++
Sbjct: 121 IKCLRTDNGG--EYTSNEFDNFCKQEGIKRQF--TVAYTPQQNGVAERMNRTLLERTRAM 176
Query: 550 MSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
+ + + + W EA+ C+++N+ P+ AI +TP+E+W+G A DY L
Sbjct: 177 LRTAEMAKSFWAEAVKTTCYVINQSPSTAIDLKTPMEMWTGKPA-DYSRL 225
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 170 bits (431), Expect = 8e-45
Identities = 94/233 (40%), Positives = 139/233 (59%)
Frame = +1
Query: 1 TLEVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGI 180
T +W +RLG ++ L +R ++ G+ T + KQ R+KF V R K I
Sbjct: 422 TTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHI 481
Query: 181 LELVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQT 360
L+L+H DVW K S+GG +FVSF+D+YSR WV P+ +K +V VFK +K +EL+T
Sbjct: 482 LDLIHSDVWESPKL-SLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELET 540
Query: 361 GRKIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERV 540
G+KI+ L+ DN G +YV F C +EGI R F A+ Q +G+A+ MNRTLLER
Sbjct: 541 GKKIKCLRTDNGG--EYVDGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLLERT 596
Query: 541 RSLMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
R+++ + + + W EA+ AC+++NR P+ I +TP+E+W G DY L
Sbjct: 597 RAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGK-PVDYSSL 648
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 170 bits (430), Expect = 1e-44
Identities = 94/233 (40%), Positives = 139/233 (59%)
Frame = +1
Query: 1 TLEVWKKRLGLTCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFGTVVHRPKGI 180
T +W +RLG ++ L +R ++ G+ T + KQ R+KF V R K I
Sbjct: 422 TTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHI 481
Query: 181 LELVHVDVWGPTKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVFKKWKKCVELQT 360
L+L+H DVW + S+GG +FVSF+D+YSR WV P+ +K +V VFK +K +EL+T
Sbjct: 482 LDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELET 540
Query: 361 GRKIQWLQFDNAGKQKYVKDPFRKICLKEGIRRLFIPREANRKQLDGIAKSMNRTLLERV 540
+KI+ L+ DN G+ YV F C +EGI R F A+ Q +G+A+ MNRTLLER
Sbjct: 541 EKKIKCLRTDNGGE--YVDGEFLAFCKQEGIVRQFTV--AHTPQQNGVAERMNRTLLERT 596
Query: 541 RSLMSNSGVEYTLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSAATDYGML 699
R+++ +G+ + W EA AC+++NR P+ AI +TP+E+W G DY L
Sbjct: 597 RAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGK-PVDYSSL 648