BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00030084
         (380 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020264489.1| LOW QUALITY PROTEIN: probable RNA-dependent ...   137   4e-35
ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Den...   105   1e-23
gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasi...   103   5e-23
ref|XP_020589018.1| probable RNA-dependent RNA polymerase 2 [Pha...   102   1e-22
ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polyme...    93   2e-19
gb|OAY66641.1| RNA-dependent RNA polymerase 2 [Ananas comosus]         86   4e-19
gb|KVI06345.1| Nucleotide-binding, alpha-beta plait [Cynara card...    92   6e-19
ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polyme...    91   8e-19
ref|XP_023754218.1| RNA-dependent RNA polymerase 2 [Lactuca sati...    88   1e-17
ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ana...    87   2e-17
ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polyme...    87   3e-17
ref|XP_022018248.1| RNA-dependent RNA polymerase 2 [Helianthus a...    86   5e-17
ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polyme...    85   1e-16
gb|PAN38580.1| hypothetical protein PAHAL_G00532 [Panicum hallii]      83   7e-16
gb|KQJ83037.1| hypothetical protein BRADI_5g12757v3 [Brachypodiu...    82   1e-15
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme...    82   1e-15
ref|XP_019456854.1| PREDICTED: RNA-dependent RNA polymerase 2 is...    82   1e-15
gb|OIW18350.1| hypothetical protein TanjilG_31490 [Lupinus angus...    82   1e-15
ref|XP_004978058.1| probable RNA-dependent RNA polymerase 2 [Set...    81   3e-15
ref|XP_015636884.1| PREDICTED: probable RNA-dependent RNA polyme...    81   3e-15

>ref|XP_020264489.1| LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase 2
           [Asparagus officinalis]
          Length = 1120

 Score =  137 bits (346), Expect = 4e-35
 Identities = 70/113 (61%), Positives = 86/113 (76%)
 Frame = +1

Query: 40  TSPAPKRATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSL 219
           ++P P+RAT++VNNIPRSATA ELV+FF S  GPVFACKI+SVHTNWKSLGFG++QFDS+
Sbjct: 6   STPKPQRATINVNNIPRSATAXELVAFFSSAIGPVFACKISSVHTNWKSLGFGRVQFDSI 65

Query: 220 ASAQKALDLSSRGLLSFQRVPLSLSESPTDIVPXXXXXXXXXXXXVTIRFGNL 378
           +SAQKA+  S+   L FQR PLS++ES  DIVP            V IRFGN+
Sbjct: 66  SSAQKAIAFSNTNPLLFQRSPLSIAESHADIVP--RGTGDRRFDDVVIRFGNV 116


>ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
 gb|PKU68673.1| RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
          Length = 1117

 Score =  105 bits (261), Expect = 1e-23
 Identities = 55/88 (62%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
 Frame = +1

Query: 58  RATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           R TV V+NIPR+A A EL+SFFESV GPVFAC+IAS H NW SLGFG++QF  LA+A+ A
Sbjct: 5   RLTVRVSNIPRTAIAEELLSFFESVVGPVFACEIASAHRNWMSLGFGRVQFKCLAAAENA 64

Query: 238 LDLSSRGLLS-FQRVPLSLSESPTDIVP 318
             L S+GLL  FQR  L++  SP DI+P
Sbjct: 65  CFLYSKGLLPVFQRSNLAVFPSPEDILP 92


>gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasia shenzhenica]
          Length = 1120

 Score =  103 bits (256), Expect = 5e-23
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
 Frame = +1

Query: 58  RATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           R+TV ++NIPR+A A EL+ FFES  GPV+AC+IAS H NW SLGFG++QF+SLASA+KA
Sbjct: 5   RSTVRISNIPRTAIAEELLRFFESAVGPVYACEIASAHRNWMSLGFGRVQFESLASAEKA 64

Query: 238 LDLSSRGLLS-FQRVPLSLSESPTDIV 315
             L+S G L  FQR  L++S S  D++
Sbjct: 65  CSLASAGRLPLFQRFHLAVSRSVEDVI 91


>ref|XP_020589018.1| probable RNA-dependent RNA polymerase 2 [Phalaenopsis equestris]
          Length = 1118

 Score =  102 bits (254), Expect = 1e-22
 Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
 Frame = +1

Query: 58  RATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           R+TV V+NIPR+A A EL+ FFES  GPVFAC+I S H NW SLGFG++QFDSLA+A+ A
Sbjct: 5   RSTVRVSNIPRTAIAEELLRFFESAVGPVFACEIVSAHRNWMSLGFGRVQFDSLAAAEIA 64

Query: 238 LDLSSRGLLS-FQRVPLSLSESPTDIVP 318
             +SS+G L  FQR  L++  SP DI P
Sbjct: 65  CLMSSKGRLPIFQRSNLAVFPSPEDIFP 92


>ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
           dactylifera]
          Length = 1117

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +1

Query: 58  RATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           RATV V+NIP +A A EL  FF+S  G VFAC+IA+ H NWKS GFG++QFDSL +A +A
Sbjct: 5   RATVQVSNIPLTAVAQELFEFFDSAVGSVFACEIATAHRNWKSRGFGRVQFDSLTAADRA 64

Query: 238 LDLSSRG-LLSFQRVPLSLSESPTDIV 315
             L+ RG L  FQR  L++  S  DI+
Sbjct: 65  CLLADRGHLPDFQRARLAVRRSNEDII 91


>gb|OAY66641.1| RNA-dependent RNA polymerase 2 [Ananas comosus]
          Length = 127

 Score = 86.3 bits (212), Expect = 4e-19
 Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
 Frame = +1

Query: 22  MGEAAPTSPAPKRATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQ 201
           MG AAPT       TV V+NIP SA A EL++FF++  G  FAC+I +    W+ LGFG+
Sbjct: 1   MGGAAPT-------TVRVSNIPASAVAAELLAFFDAAVGSAFACEIVTARRQWRPLGFGR 53

Query: 202 LQFDSLASAQKALDLSSRG-LLSFQRVPLSLSESPTDIV 315
           +QFDS A+A++A  L+  G L  FQR  L+L+ S  DIV
Sbjct: 54  VQFDSAAAAERARALAGDGHLPPFQRARLALAPSGDDIV 92


>gb|KVI06345.1| Nucleotide-binding, alpha-beta plait [Cynara cardunculus var.
           scolymus]
          Length = 1063

 Score = 91.7 bits (226), Expect = 6e-19
 Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
 Frame = +1

Query: 61  ATVHVNNIPRSATAGELVSFFESVAGP--VFACKIASVHTNWKSLGFGQLQFDSLASAQK 234
           ATV V+NIPRS TA +L+ F ES  G   VFAC+I+S H NWKS GFG++QF++L S  K
Sbjct: 9   ATVRVSNIPRSVTAQDLLDFLESHTGKSTVFACEISSDHKNWKSRGFGRIQFETLESKSK 68

Query: 235 ALDLSSRGLLSFQRVPLSLSESPTDIV 315
           A+ LS +GLL F+   LSLS S  D++
Sbjct: 69  AISLSRQGLLCFKGFNLSLSHSLDDVI 95


>ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Musa acuminata
           subsp. malaccensis]
          Length = 1106

 Score = 91.3 bits (225), Expect = 8e-19
 Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
 Frame = +1

Query: 61  ATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKAL 240
           ATVHV+NIP +A AGE   +FE+  G VFAC+IA+   NWKS GFG++QFDSLA+A++A 
Sbjct: 6   ATVHVSNIPLAAVAGEFFEYFEAAVGSVFACEIATARRNWKSRGFGRVQFDSLAAAERAC 65

Query: 241 DLSSRGLL-SFQRVPLSLSESPTDIV 315
            L++ G L +FQ   L+++ S  DIV
Sbjct: 66  LLAAEGRLPNFQCARLTITRSRDDIV 91


>ref|XP_023754218.1| RNA-dependent RNA polymerase 2 [Lactuca sativa]
 gb|PLY99155.1| hypothetical protein LSAT_4X73020 [Lactuca sativa]
          Length = 1117

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 46/87 (52%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
 Frame = +1

Query: 61  ATVHVNNIPRSATAGELVSFFESVAGP--VFACKIASVHTNWKSLGFGQLQFDSLASAQK 234
           ATV V+NIPRS TA +L+ F E   G   VFAC+I+S H NWKS GFG++QF++L S  K
Sbjct: 9   ATVRVSNIPRSVTAKDLLDFLERHTGKSTVFACEISSDHKNWKSRGFGRVQFETLGSKSK 68

Query: 235 ALDLSSRGLLSFQRVPLSLSESPTDIV 315
           A+ LS +G L F+   LSLS S  D++
Sbjct: 69  AMSLSRQGALCFKGFNLSLSHSLDDVI 95


>ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ananas comosus]
          Length = 1125

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
 Frame = +1

Query: 22  MGEAAPTSPAPKRATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQ 201
           MG AAPT       TV V+NIP SA A EL++FF++  G  FAC+I +    W+ LGFG+
Sbjct: 1   MGGAAPT-------TVRVSNIPASAVAAELLAFFDAAVGSAFACEIVTARRQWRPLGFGR 53

Query: 202 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIV 315
           +QFDS A+A++A  L+  G L  FQR  L+L+ S  DIV
Sbjct: 54  VQFDSAAAAERARALAGDGRLPPFQRASLALAPSGDDIV 92


>ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Brachypodium
           distachyon]
 gb|KQK17355.1| hypothetical protein BRADI_1g33920v3 [Brachypodium distachyon]
          Length = 1138

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
 Frame = +1

Query: 34  APTSPAP-KRATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQF 210
           A   P P   ATV V+NIPR A A E+++FF+S  G  FAC+I + H  W+S G G +QF
Sbjct: 2   AAAVPEPISTATVRVSNIPRLAVAAEILAFFDSAVGATFACEIVAAHRGWQSRGHGTVQF 61

Query: 211 DSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVP 318
           DS A+A  A +L+S G L  F   PLS+S +P D++P
Sbjct: 62  DSAATATLAAELASSGRLPRFLGSPLSVSPAPADLLP 98


>ref|XP_022018248.1| RNA-dependent RNA polymerase 2 [Helianthus annuus]
 gb|OTF90808.1| putative RNA-dependent RNA polymerase 2 [Helianthus annuus]
          Length = 1121

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +1

Query: 64  TVHVNNIPRSATAGELVSFFESVAG--PVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           TV V NIPRSATA +L++F E+  G   +FAC+I+S H NWKS GFG++QF++L S  KA
Sbjct: 11  TVRVTNIPRSATAQDLLTFLETHTGNSTIFACEISSDHKNWKSRGFGRVQFETLESKSKA 70

Query: 238 LDLSSRGLLSFQRVPLSLSESPTDIV 315
           + LS +  L F+   LSLS S  D++
Sbjct: 71  ISLSKKSALCFKGFNLSLSHSLDDVI 96


>ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
           guineensis]
          Length = 1117

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
 Frame = +1

Query: 58  RATVHVNNIPRSATAGELVSFFESVAGPVFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           RATV V+NIP +A A EL  FF++  G VFAC+IA+   NWKS GFG++QFDSL +A++A
Sbjct: 5   RATVQVSNIPLTAVAQELFEFFDAAVGSVFACEIATARRNWKSRGFGRVQFDSLGAAERA 64

Query: 238 LDLSSR-GLLSFQRVPLSLSESPTDIV 315
             L+ R  L  FQ   L++  S  DI+
Sbjct: 65  CRLADRCDLPDFQGARLAILRSKEDII 91


>gb|PAN38580.1| hypothetical protein PAHAL_G00532 [Panicum hallii]
          Length = 1133

 Score = 82.8 bits (203), Expect = 7e-16
 Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
 Frame = +1

Query: 31  AAPTSPAP-KRATVHVNNIPRSATAGELVSFFESVA--GPVFACKIASVHTNWKSLGFGQ 201
           AA  +PAP   ATV V+NIP SA A EL++FF+S    G  FAC+IA+ H  W S G G 
Sbjct: 6   AAAAAPAPGATATVRVSNIPPSAIAAELLAFFDSAVATGAAFACEIAAAHRGWLSRGHGS 65

Query: 202 LQFDSLASAQKALDL-SSRGLLSFQRVPLSLSESPTDIVP 318
           +QF+S A+A +A+DL SS GL  F    LS+S +  D++P
Sbjct: 66  VQFESAAAATRAIDLASSGGLPPFLGSHLSVSPAHVDLLP 105


>gb|KQJ83037.1| hypothetical protein BRADI_5g12757v3 [Brachypodium distachyon]
          Length = 1098

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
 Frame = +1

Query: 34  APTSPAP-KRATVHVNNIPRSATAGELVSFFESVA---GPVFACKIASVHTNWKSLGFGQ 201
           A   P P   ATV V+NIPR A A EL++FF+S     G  FAC+I + H  W+S G G 
Sbjct: 2   AAAVPEPISTATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGT 61

Query: 202 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVP 318
           +QFDS A+A  A +L+S G L  F   PLS+S +P D++P
Sbjct: 62  VQFDSAATASLAAELASSGRLPRFLGSPLSVSPAPADLLP 101


>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Brachypodium
           distachyon]
 gb|KQJ83036.1| hypothetical protein BRADI_5g12757v3 [Brachypodium distachyon]
          Length = 1140

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
 Frame = +1

Query: 34  APTSPAP-KRATVHVNNIPRSATAGELVSFFESVA---GPVFACKIASVHTNWKSLGFGQ 201
           A   P P   ATV V+NIPR A A EL++FF+S     G  FAC+I + H  W+S G G 
Sbjct: 2   AAAVPEPISTATVRVSNIPRLAVAAELLAFFDSAVAAVGTTFACEIVAAHRGWQSRGHGT 61

Query: 202 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVP 318
           +QFDS A+A  A +L+S G L  F   PLS+S +P D++P
Sbjct: 62  VQFDSAATASLAAELASSGRLPRFLGSPLSVSPAPADLLP 101


>ref|XP_019456854.1| PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Lupinus
           angustifolius]
 ref|XP_019456863.1| PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Lupinus
           angustifolius]
 ref|XP_019456871.1| PREDICTED: RNA-dependent RNA polymerase 2 isoform X2 [Lupinus
           angustifolius]
          Length = 1159

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
 Frame = +1

Query: 64  TVHVNNIPRSATAGELVSFFESVAGP--VFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           TVHV+NIP+SATA EL+ F ES+ GP  VFA +I S H NW S G G++QF++L S  KA
Sbjct: 12  TVHVSNIPQSATAKELLQFLESIFGPSSVFALEIRSHHENWNSRGSGRVQFETLESKSKA 71

Query: 238 LDLSSRGLLSFQRVPLSLSESPTDIVP 318
           + LS +  L F    L ++ES  DIVP
Sbjct: 72  ITLSLQNDLVFMSHYLQVTESYGDIVP 98


>gb|OIW18350.1| hypothetical protein TanjilG_31490 [Lupinus angustifolius]
          Length = 1279

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
 Frame = +1

Query: 64  TVHVNNIPRSATAGELVSFFESVAGP--VFACKIASVHTNWKSLGFGQLQFDSLASAQKA 237
           TVHV+NIP+SATA EL+ F ES+ GP  VFA +I S H NW S G G++QF++L S  KA
Sbjct: 12  TVHVSNIPQSATAKELLQFLESIFGPSSVFALEIRSHHENWNSRGSGRVQFETLESKSKA 71

Query: 238 LDLSSRGLLSFQRVPLSLSESPTDIVP 318
           + LS +  L F    L ++ES  DIVP
Sbjct: 72  ITLSLQNDLVFMSHYLQVTESYGDIVP 98


>ref|XP_004978058.1| probable RNA-dependent RNA polymerase 2 [Setaria italica]
 gb|KQK97623.1| hypothetical protein SETIT_009219mg [Setaria italica]
          Length = 1130

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
 Frame = +1

Query: 31  AAPTSPAP-KRATVHVNNIPRSATAGELVSFFESVAGP--VFACKIASVHTNWKSLGFGQ 201
           AA  +PAP   ATV V+NIP SA A EL++FF+S       FAC+IA+ H  W S G G 
Sbjct: 3   AAAAAPAPGATATVRVSNIPPSAIAAELLAFFDSAVATDAAFACEIAAAHRGWLSRGHGS 62

Query: 202 LQFDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVP 318
           +QFDS A+A +A+DL+S G L  F    LS+S +  D++P
Sbjct: 63  VQFDSAAAATRAVDLASSGRLPPFLGSRLSVSPAHVDLLP 102


>ref|XP_015636884.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Oryza sativa
           Japonica Group]
 sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
 emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
          Length = 1136

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 47/98 (47%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
 Frame = +1

Query: 37  PTSPAPKRATVHVNNIPRSATAGELVSFFES---VAGPVFACKIASVHTNWKSLGFGQLQ 207
           PT+ A   A++ V+NIP SA A EL++FF+S   VAG  FAC+IA+ H  W S G G +Q
Sbjct: 2   PTAAAAATASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQ 61

Query: 208 FDSLASAQKALDLSSRGLL-SFQRVPLSLSESPTDIVP 318
           F S A+A  A  L+S G L  F    LS+S SP D++P
Sbjct: 62  FGSAAAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLP 99