BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00029338
         (585 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposo...   108   1e-23
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   106   5e-23
gb|PKU59058.1| Retrovirus-related Pol polyprotein from transposo...   105   9e-23
gb|PKU66732.1| Retrovirus-related Pol polyprotein from transposo...   104   2e-22
gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposo...   103   3e-22
gb|PKU81867.1| Retrovirus-related Pol polyprotein from transposo...   103   3e-22
gb|PNX78574.1| retrovirus-related Pol polyprotein from transposo...   103   5e-22
ref|XP_017192343.1| PREDICTED: uncharacterized protein LOC108175...   103   6e-22
gb|PKU80502.1| Retrovirus-related Pol polyprotein from transposo...   103   6e-22
gb|PKU86178.1| Retrovirus-related Pol polyprotein from transposo...   102   1e-21
gb|PKU68311.1| Retrovirus-related Pol polyprotein from transposo...   102   1e-21
gb|PKU68986.1| Retrovirus-related Pol polyprotein from transposo...   102   1e-21
gb|PKU72770.1| Retrovirus-related Pol polyprotein from transposo...   100   2e-21
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...    98   2e-21
gb|PKU72406.1| Retrovirus-related Pol polyprotein from transposo...   101   2e-21
gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposo...   101   3e-21
gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposo...   101   3e-21
dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subte...   101   3e-21
gb|PKU80388.1| Retrovirus-related Pol polyprotein from transposo...   100   4e-21
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...   100   5e-21

>gb|PKU77483.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 994

 Score =  108 bits (269), Expect = 1e-23
 Identities = 51/127 (40%), Positives = 75/127 (59%)
 Frame = -3

Query: 382 TWHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHTLH 203
           TWH RLGHPS S++  LS VL+                   +LPF   T  T+Q L  +H
Sbjct: 476 TWHQRLGHPSTSTLRLLSPVLSTSISSVSSHCNACSKAKCTRLPFPLSTTSTNQCLELIH 535

Query: 202 SDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVK 23
           +DVWGP+PS + + +RFY++ +D+ S++SW +PL  KS+V S FI F  ++  QF   +K
Sbjct: 536 NDVWGPSPSLSMQSYRFYVVFIDDFSRYSWVYPLHHKSDVFSKFIHFQRMVEKQFQTSIK 595

Query: 22  FVQTDSG 2
            ++TD G
Sbjct: 596 ILRTDGG 602


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score =  106 bits (264), Expect = 5e-23
 Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
 Frame = -3

Query: 382 TWHARLGHPSLSSMNQLSSVLNY-FNQC-NXXXXXXXXXXXXXKLPFTRRTNYTDQFLHT 209
           TWH +LGHP+   +N++  + N   + C N              LPF    +   + L  
Sbjct: 366 TWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPLDL 425

Query: 208 LHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRR 29
           +HSDVWGPAP  +  GF++Y++ +D+ S+F+W +PL++KS+V   FIQF  L+ NQFN+R
Sbjct: 426 VHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKR 485

Query: 28  VKFVQTDSG 2
           +K +Q D G
Sbjct: 486 IKTLQCDGG 494


>gb|PKU59058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 969

 Score =  105 bits (262), Expect = 9e-23
 Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
 Frame = -3

Query: 400 NKMDYMTWHARLGHPSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           NK    TWH RLGHP+  ++  L+S+  + +                 K PF R +N   
Sbjct: 450 NKAPSATWHNRLGHPNNQTLRLLASMQPHLHISVKDLECISCKSCKDHKFPFARSSNRKF 509

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
             L  LHSDVWGP+P  + + FR+Y+  VD+ SQF+W FPL+ KSEV   F++   L+ N
Sbjct: 510 NPLELLHSDVWGPSPIASNQEFRYYVSFVDDYSQFTWLFPLKNKSEVFETFVKLKQLIEN 569

Query: 43  QFNRRVKFVQTDSG 2
           QFN ++K ++TD G
Sbjct: 570 QFNSKIKILRTDGG 583


>gb|PKU66732.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1298

 Score =  104 bits (260), Expect = 2e-22
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHTLH 203
           WH RLGHP+  +M  ++      N  C+             K+PFT+  N     L  LH
Sbjct: 451 WHNRLGHPNQRTMRYIAIANPQLNISCSISKCVSCSSCKGHKIPFTKSCNRMKTPLALLH 510

Query: 202 SDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVK 23
           SDVWGP+P  + +GFR+Y+  +D+ S+++W FP+R KS+VP IFI F   + NQ + ++K
Sbjct: 511 SDVWGPSPVMSNQGFRYYVTFIDDFSRYTWIFPIRNKSDVPHIFINFKIFIENQTDYKIK 570

Query: 22  FVQTDSG 2
            ++TD G
Sbjct: 571 MLRTDGG 577


>gb|PKU73682.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1211

 Score =  103 bits (258), Expect = 3e-22
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQLSS------------VLNYFNQCNXXXXXXXXXXXXXKLPFTRRT 236
           WH RLGHPSLS +  +S               N  NQC               L F    
Sbjct: 304 WHNRLGHPSLSILQHISKNNPDLHISSTSISCNPCNQCKGHK-----------LQFPISE 352

Query: 235 NYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFIT 56
           N     L  LHSDVWGP+P P+ +GFR+Y+I VD+ S+F W FP+  KS+V +IFI F+T
Sbjct: 353 NLKQAPLELLHSDVWGPSPVPSHQGFRYYVIFVDDYSRFIWLFPIMFKSDVTNIFINFVT 412

Query: 55  LMHNQFNRRVKFVQTDSG 2
            +  Q +R++K ++TD G
Sbjct: 413 FIERQTSRKIKAIRTDGG 430


>gb|PKU81867.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1349

 Score =  103 bits (258), Expect = 3e-22
 Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
 Frame = -3

Query: 382 TWHARLGHPSLSSMNQLSSV-------LNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           TWH RLGHP    +  +S+        LN F+ CN              L F R  + T 
Sbjct: 450 TWHCRLGHPHNQVLQWISNKNPALKIPLNSFS-CNSCMSCKGHK-----LSFERSISSTK 503

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
             L  +HSDVWGP+P P+ +GFR+Y+I VD+ S+F W FPL  KS+VP+IF  F+  +  
Sbjct: 504 APLELVHSDVWGPSPVPSHQGFRYYIIFVDDFSRFVWIFPLMFKSDVPNIFSNFVKFIER 563

Query: 43  QFNRRVKFVQTDSG 2
           Q NR++K ++TD G
Sbjct: 564 QTNRKLKVIRTDGG 577


>gb|PNX78574.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 677

 Score =  103 bits (256), Expect = 5e-22
 Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
 Frame = -3

Query: 382 TWHARLGHPSLSSMNQLSSVLNY-------FNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           +WH +LGHPS + ++++  + N        F  C               LPF   +++  
Sbjct: 443 SWHRKLGHPSNNVLDKVLKICNVKTSPSDKFKFCEACQLGKSHL-----LPFKSSSSHAQ 497

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
           + L  +H+DVWGPAP  +  GF++Y+  +D+SS+F+W +PL++KS+    F+QF  ++ N
Sbjct: 498 EVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTWIYPLKQKSDTIHAFMQFKNMVEN 557

Query: 43  QFNRRVKFVQTDSG 2
           QFN+R+K +Q D G
Sbjct: 558 QFNKRIKIIQCDGG 571


>ref|XP_017192343.1| PREDICTED: uncharacterized protein LOC108175054 [Malus domestica]
          Length = 1159

 Score =  103 bits (256), Expect = 6e-22
 Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQL--SSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHTL 206
           WH RLGHPS   +  +  SS +++ +                 LPF  R +  +   H +
Sbjct: 607 WHHRLGHPSNDVLTAMLRSSNISFSHDVPDQPCSHCFSGKMSSLPFVERLDRVEIPFHKI 666

Query: 205 HSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRV 26
           HSDVWGP+P  + EG R+Y+  VDE+++F W FPL  KSEV   F++F   + NQFN ++
Sbjct: 667 HSDVWGPSPIASIEGLRYYVSFVDEATRFVWLFPLMNKSEVFGTFVKFFAYVENQFNTKI 726

Query: 25  KFVQTDSG 2
           K +Q+D G
Sbjct: 727 KVLQSDGG 734


>gb|PKU80502.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1333

 Score =  103 bits (256), Expect = 6e-22
 Identities = 55/132 (41%), Positives = 76/132 (57%), Gaps = 6/132 (4%)
 Frame = -3

Query: 379 WHARLGHP------SLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQF 218
           WH RLGHP      S++S N    + N  ++C              KLPF      T   
Sbjct: 450 WHGRLGHPNQRVLKSIASSNPKLHIHNNTSKC-----VSCLTCKGHKLPFDISRTVTHAP 504

Query: 217 LHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQF 38
           L  +HSDVWGP+P P+ +GFR+YLI+VD+ S+F W FPL  KS+V + F QF+T +  Q 
Sbjct: 505 LELVHSDVWGPSPVPSHQGFRYYLILVDDYSRFVWLFPLMLKSDVFNTFKQFVTFIERQT 564

Query: 37  NRRVKFVQTDSG 2
           NR++K ++TD G
Sbjct: 565 NRKLKVLRTDGG 576


>gb|PKU86178.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1017

 Score =  102 bits (254), Expect = 1e-21
 Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 8/134 (5%)
 Frame = -3

Query: 379 WHARLGHPSLSSMN--------QLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           WH RLGHPS   +         QLS V + F+ CN              LPFT   + + 
Sbjct: 105 WHRRLGHPSYRVLQKLQKYVSPQLSFVSSSFH-CNACELAKSHK-----LPFTSSISRSS 158

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
             L  +HSDVWGP+   + +G+++Y+I VD+ S+FSW FPL  KSEVP IF++F  L+  
Sbjct: 159 SVLQLIHSDVWGPSSVISLQGYKYYIIFVDDFSRFSWLFPLTAKSEVPLIFVRFQRLVER 218

Query: 43  QFNRRVKFVQTDSG 2
           QFN ++K  ++D G
Sbjct: 219 QFNAKIKIFRSDGG 232


>gb|PKU68311.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1211

 Score =  102 bits (254), Expect = 1e-21
 Identities = 55/144 (38%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
 Frame = -3

Query: 397 KMDYMTWHARLGHPSLSSMNQLSS------------VLNYFNQCNXXXXXXXXXXXXXKL 254
           +M    WH RLGHPSLS +  +S                  NQC               L
Sbjct: 298 RMSSSQWHNRLGHPSLSILQHISKNNPDLHISSTSISCTPCNQCKGHK-----------L 346

Query: 253 PFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSI 74
            F    N     L  LHSDVWGP+P P+ +GFR+Y+I VD+ S+F W FP+  KS+V +I
Sbjct: 347 QFPISENRKQAPLELLHSDVWGPSPVPSHQGFRYYVIFVDDYSRFIWLFPIMFKSDVTNI 406

Query: 73  FIQFITLMHNQFNRRVKFVQTDSG 2
           FI F+T +  Q +R++K ++TD G
Sbjct: 407 FINFVTFIERQTSRKIKAIRTDGG 430


>gb|PKU68986.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1136

 Score =  102 bits (253), Expect = 1e-21
 Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
 Frame = -3

Query: 379 WHARLGHP------SLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQF 218
           WH RLGHP      SLSS NQL  +    N C               L F    N     
Sbjct: 234 WHQRLGHPHNRVFNSLSSCNQLLKMNKTHNTCESCTAAKCHK-----LVFQHSVNRQLHP 288

Query: 217 LHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQF 38
           L  +HSDVWGPAP+ + +GFRFY+I VD+ ++++W +PL+ KS+V S+F+ F T + N  
Sbjct: 289 LDLIHSDVWGPAPTTSNQGFRFYVIFVDDHTRYTWIYPLKFKSDVFSVFVNFKTQIENFT 348

Query: 37  NRRVKFVQTDSG 2
            RR+K ++TD G
Sbjct: 349 ERRIKTLRTDGG 360


>gb|PKU72770.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 439

 Score =  100 bits (250), Expect = 2e-21
 Identities = 53/139 (38%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
 Frame = -3

Query: 400 NKMDYMTWHARLGHPSLSSMNQLSS------VLNYFNQCNXXXXXXXXXXXXXKLPFTRR 239
           +K    TWH RLGHP L ++ ++S       +L+    C              KLPF   
Sbjct: 298 SKNSTSTWHDRLGHPHLRTLQRISHRNPTLRILHSTEPC-----ITCIQCKTHKLPFESS 352

Query: 238 TNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFI 59
            + T + L  +HSDVWGP+P  + +GFRF++I VD+ S+++W FPL  KS+V + FI F 
Sbjct: 353 QSRTHKPLEIVHSDVWGPSPVFSVQGFRFFVIFVDDYSRYTWIFPLVHKSDVTNTFIHFT 412

Query: 58  TLMHNQFNRRVKFVQTDSG 2
             + NQ N R+K ++TD G
Sbjct: 413 KFIENQTNSRIKTIRTDGG 431


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score = 98.2 bits (243), Expect = 2e-21
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
 Frame = -3

Query: 382 TWHARLGHPS-------LSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           +WH RLGHP+       L S N   S  ++FN C               LPF   +++  
Sbjct: 31  SWHRRLGHPNNKFLDRVLKSCNVKLSPSDHFNFCEACQYGKMHF-----LPFKTSSSHAK 85

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
           +    +H+DVWGPAP  +  GF++Y+  +D+ S+F+W +PL+ KS+    F QF  +  N
Sbjct: 86  EIFELVHTDVWGPAPVTSPSGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNMAEN 145

Query: 43  QFNRRVKFVQTDSG 2
            FN+R+K +Q D G
Sbjct: 146 LFNKRIKTIQCDGG 159


>gb|PKU72406.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1246

 Score =  101 bits (252), Expect = 2e-21
 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 6/134 (4%)
 Frame = -3

Query: 385 MTWHARLGHPSL------SSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           + WH RL HP L      +S N L  +  +FN C              KLPF R  + T 
Sbjct: 453 INWHQRLVHPHLRITQTIASTNPLLHIPKFFNSC-----VHCNVCKSHKLPFERSVHRTM 507

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
           + L  +HSDVWGP+P  +   FR+YL+ VD+ S+F W FPL  KS+   IFI FIT +  
Sbjct: 508 KPLDLIHSDVWGPSPVSSRNAFRYYLLCVDDFSRFCWLFPLAYKSDATRIFIDFITFIER 567

Query: 43  QFNRRVKFVQTDSG 2
           Q +R++K ++TD G
Sbjct: 568 QTDRKIKALRTDGG 581


>gb|PKU64191.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 962

 Score =  101 bits (251), Expect = 3e-21
 Identities = 47/126 (37%), Positives = 74/126 (58%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHTLHS 200
           WH RLGHPS S    LSS+L +                  +LPF+   + T + L  +HS
Sbjct: 448 WHQRLGHPSSSIQQGLSSLLLFSPSFVNLHCNACSQAKCTRLPFSLSQSTTTKCLELVHS 507

Query: 199 DVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKF 20
           DVWG +P+P+ + + +Y++ +D+ S+++W +PL  KSEV +IF+QF  L+  QF   +K 
Sbjct: 508 DVWGSSPTPSMQAYLYYVVFIDDYSRYTWIYPLCHKSEVYTIFLQFQALVEKQFQHPIKI 567

Query: 19  VQTDSG 2
           ++TD G
Sbjct: 568 LRTDGG 573


>gb|PKU70861.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1047

 Score =  101 bits (251), Expect = 3e-21
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQLSSVLNYFN-QCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHTLH 203
           WH RLGHP+  +M  ++S     +   +             K+PF++  N     L  LH
Sbjct: 451 WHNRLGHPNQRTMRLIASAYPQLHISISSFQCVACSSCKGHKMPFSKSCNRMKTPLALLH 510

Query: 202 SDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVK 23
           SDVWGP+P  + +GFR+Y+  +D+ S+++W FP   KS+VP IFI F T + NQ N ++K
Sbjct: 511 SDVWGPSPVTSNQGFRYYVTFIDDFSRYTWIFPCSNKSDVPHIFINFKTFIENQTNYKIK 570

Query: 22  FVQTDSG 2
            ++TD G
Sbjct: 571 ILRTDGG 577


>dbj|GAU19483.1| hypothetical protein TSUD_77270 [Trifolium subterraneum]
          Length = 1353

 Score =  101 bits (251), Expect = 3e-21
 Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
 Frame = -3

Query: 382 TWHARLGHPSLSSMNQL--SSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQFLHT 209
           +WH RLGHP+   ++++  S  +      N              LPF   +++  + L  
Sbjct: 435 SWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLPFKSSSSHAQEPLEL 494

Query: 208 LHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQFNRR 29
           +H+DVWGPAP   + GF++Y+  VD+ S+F+W +PL++KSE    FIQF  L  NQFN+R
Sbjct: 495 VHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAFIQFKNLTENQFNKR 554

Query: 28  VKFVQTDSG 2
           +K +Q D G
Sbjct: 555 IKVIQCDGG 563


>gb|PKU80388.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1349

 Score =  100 bits (250), Expect = 4e-21
 Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
 Frame = -3

Query: 379 WHARLGHPSLSSMNQLSS------VLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTDQF 218
           WH RLGHP    ++ +S       + +    CN              L F R  + T+  
Sbjct: 451 WHCRLGHPHTRVLHWVSKSNPDLHISSTSFSCNSCLSCKGHK-----LSFDRSNSTTNAP 505

Query: 217 LHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHNQF 38
           L  +HSDVWGP+P P+ +GFR+Y+I VD+ S+F W FPL  KS+VP+IF  F+  +  Q 
Sbjct: 506 LELVHSDVWGPSPVPSHQGFRYYVIFVDDFSRFVWLFPLMLKSDVPNIFHNFVKFIERQT 565

Query: 37  NRRVKFVQTDSG 2
           NR++K ++TD G
Sbjct: 566 NRKLKVIRTDGG 577


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score =  100 bits (249), Expect = 5e-21
 Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
 Frame = -3

Query: 382 TWHARLGHPS-------LSSMNQLSSVLNYFNQCNXXXXXXXXXXXXXKLPFTRRTNYTD 224
           +WH +LGHP+       L   N  +S  + F  C               LPF    ++  
Sbjct: 166 SWHRKLGHPNNKVLDKVLKHCNVKTSSSDQFKFCEACQFGKLHL-----LPFKSSYSHAQ 220

Query: 223 QFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSQFSWYFPLRRKSEVPSIFIQFITLMHN 44
           + L  +H+DVWGPAP  +  GF++Y+  +D+ S+F+W +PL++KSE    F QF TL+ N
Sbjct: 221 EPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFKTLVEN 280

Query: 43  QFNRRVKFVQTDSG 2
           QFN+R+K VQ D G
Sbjct: 281 QFNKRIKIVQCDGG 294