BLASTX nr result
ID: Ophiopogon27_contig00029010
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00029010
(433 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006471317.1| PREDICTED: uncharacterized protein LOC102616... 107 6e-25
gb|AMY96445.1| gag/pol protein [Momordica dioica] 103 7e-23
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 101 3e-22
ref|XP_016511527.1| PREDICTED: uncharacterized protein LOC107828... 100 6e-22
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 99 2e-21
ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207... 99 3e-21
ref|XP_020242941.1| uncharacterized protein LOC109821162, partia... 98 4e-21
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 99 4e-21
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-... 96 7e-21
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 98 7e-21
dbj|BAA22288.1| polyprotein [Oryza australiensis] 98 8e-21
gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group] 97 1e-20
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc... 97 1e-20
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 97 1e-20
gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica] 97 2e-20
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 96 3e-20
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 96 3e-20
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 96 3e-20
gb|OIT08474.1| long chain acyl-coa synthetase 1 [Nicotiana atten... 96 4e-20
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 96 5e-20
>ref|XP_006471317.1| PREDICTED: uncharacterized protein LOC102616172 [Citrus sinensis]
Length = 389
Score = 107 bits (268), Expect = 6e-25
Identities = 66/133 (49%), Positives = 79/133 (59%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + NK L L QA IDKIL RFSI++S L F T K KT +E
Sbjct: 12 GIKLLRDRKNKTLALSQAVYIDKILARFSIENSKTGLLPFRHGITFSKDQSPKTSEEIER 71
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQIYQDSSKSKSGYVFTIDGDTVS*MS 72
M R+PY +A+G LM MLCTRPDI FAV + R DS KS SGYVF + +S MS
Sbjct: 72 MRRVPYATAVGSLMCAMLCTRPDICFAVRMSDR-----DSRKSTSGYVFALGSGAISWMS 126
Query: 71 VKQKCLMDSATEA 33
VKQ C+ DS T+A
Sbjct: 127 VKQSCITDSTTKA 139
>gb|AMY96445.1| gag/pol protein [Momordica dioica]
Length = 1313
Score = 103 bits (257), Expect = 7e-23
Identities = 70/178 (39%), Positives = 91/178 (51%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ NK +G+ Q++ IDK+L RF +QDS + L F K C KT +E +
Sbjct: 1055 GIRIYRDRSNKTIGMSQSTYIDKVLSRFKMQDSKKGLLPFRHGIHLSKEQCPKTPQEVED 1114
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M IPY SAIG LMY MLCTRPD+ +A+SIVSRYQ
Sbjct: 1115 MRNIPYSSAIGSLMYAMLCTRPDVCYALSIVSRYQSNPGRDHWTAVKNILKYLRRTRNMF 1174
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D SKS+SG VFT++G VS S KQ C+ DS EA
Sbjct: 1175 LVYGGDKDLAVKGYTDSSFQTDKDDSKSQSG-VFTLNGGAVSWRSSKQTCVADSTCEA 1231
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92827.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 101 bits (252), Expect = 3e-22
Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 900 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNK 959
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRY-------------------------- 150
MS IPY SAIG +MY MLCTRPD+ +A+S SRY
Sbjct: 960 MSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMF 1019
Query: 149 -------------------QIYQDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
QI +D +S+SG+VF ++G VS S KQ ++DS TEA
Sbjct: 1020 LAYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFCLNGGAVSWKSSKQDIVVDSTTEA 1077
>ref|XP_016511527.1| PREDICTED: uncharacterized protein LOC107828675 [Nicotiana tabacum]
Length = 431
Score = 100 bits (248), Expect = 6e-22
Identities = 60/133 (45%), Positives = 76/133 (57%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + ++LGL QA ID IL R S+QDS + FL F K+ KT +
Sbjct: 284 GIKLMRDRKRRILGLSQALYIDTILTRLSMQDSKKGFLPFRHGFFMSKNQSAKTTDDTEK 343
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQIYQDSSKSKSGYVFTIDGDTVS*MS 72
M +PY SA+G LMY MLCTR DI F V + DS KS SGY+FT+ G +S S
Sbjct: 344 MKVVPYASAVGSLMYAMLCTRLDICFVVGMSD-----SDSRKSTSGYIFTLGGGAISWRS 398
Query: 71 VKQKCLMDSATEA 33
+KQ C+ DS EA
Sbjct: 399 IKQSCVADSTMEA 411
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA93176.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 99.4 bits (246), Expect = 2e-21
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 748 GIRIYKDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTNERNK 807
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRY-------------------------- 150
MS IPY SAIG +MY MLCTRPD+ +A+S S+Y
Sbjct: 808 MSVIPYASAIGSIMYAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYLRRTKDMF 867
Query: 149 -------------------QIYQDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
QI +D +S+SG+VF ++G VS S KQ + DS TEA
Sbjct: 868 LVYGGQEELVVNGYTDASFQIDKDDFRSQSGFVFYLNGGAVSWKSSKQDTVADSTTEA 925
>ref|XP_017233167.1| PREDICTED: uncharacterized protein LOC108207215, partial [Daucus
carota subsp. sativus]
Length = 3860
Score = 99.0 bits (245), Expect = 3e-21
Identities = 70/177 (39%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + +ML L Q ID +L RF++QDS + L F T K C T KE N
Sbjct: 1181 GIKLIRDRKKRMLALSQEPYIDDVLARFNMQDSKKGNLPFRHGVTLSKRQCPSTPKEIEN 1240
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M +PY SA G LMY MLCTRPDI FAV +VSRYQ
Sbjct: 1241 MKAVPYASACGSLMYAMLCTRPDICFAVGMVSRYQSNPGQEHWSAVKAILKYLRRTKEYM 1300
Query: 146 -IY------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D KS SG VFT+ G V SVKQKC+ DS EA
Sbjct: 1301 LVYKSSDLVPLGYTDSDFQTDKDKRKSTSGCVFTLGGGAVIWRSVKQKCIADSTMEA 1357
Score = 99.0 bits (245), Expect = 3e-21
Identities = 70/177 (39%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + +ML L Q ID +L RF++QDS + L F T K C T KE N
Sbjct: 2396 GIKLIRDRKKRMLALSQEPYIDDVLARFNMQDSKKGNLPFRHGVTLSKRQCPSTPKEIEN 2455
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M +PY SA G LMY MLCTRPDI FAV +VSRYQ
Sbjct: 2456 MKAVPYASACGSLMYAMLCTRPDICFAVGMVSRYQSNPGQEHWSAVKAILKYLRRTKEYM 2515
Query: 146 -IY------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D KS SG VFT+ G V SVKQKC+ DS EA
Sbjct: 2516 LVYKSSDLVPLGYTDSDFQTDKDKRKSTSGCVFTLGGGAVIWRSVKQKCIADSTMEA 2572
Score = 99.0 bits (245), Expect = 3e-21
Identities = 70/177 (39%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + +ML L Q ID +L RF++QDS + L F T K C T KE N
Sbjct: 3611 GIKLIRDRKKRMLALSQEPYIDDVLARFNMQDSKKGNLPFRHGVTLSKRQCPSTPKEIEN 3670
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M +PY SA G LMY MLCTRPDI FAV +VSRYQ
Sbjct: 3671 MKAVPYASACGSLMYAMLCTRPDICFAVGMVSRYQSNPGQEHWSAVKAILKYLRRTKEYM 3730
Query: 146 -IY------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D KS SG VFT+ G V SVKQKC+ DS EA
Sbjct: 3731 LVYKSSDLVPLGYTDSDFQTDKDKRKSTSGCVFTLGGGAVIWRSVKQKCIADSTMEA 3787
>ref|XP_020242941.1| uncharacterized protein LOC109821162, partial [Asparagus
officinalis]
Length = 462
Score = 98.2 bits (243), Expect = 4e-21
Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 16/149 (10%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI++++ +MLGL Q+ I K+L+RFS+++S + F+ + K + +T +ER
Sbjct: 61 GIQIYRDRSKRMLGLSQSRYIGKVLKRFSMENSKKGFVPASPGISLSKKMSPRTDEERKR 120
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIV----------------SRYQIYQDSSKSK 120
MS IPY SA+G +MY MLCTRPDI +++S++ S +Q D SKS
Sbjct: 121 MSLIPYASAVGSIMYAMLCTRPDIAYSLSLLFLIYGKSDLRMEAFSDSSFQSDIDDSKSV 180
Query: 119 SGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
SGYVFT++ VS S KQ + DS EA
Sbjct: 181 SGYVFTLNRGAVSWKSSKQDTVADSTMEA 209
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 98.6 bits (244), Expect = 4e-21
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 763 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNK 822
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS IPY SAIG +MY MLCT PD+ +A+S SRYQ
Sbjct: 823 MSVIPYASAIGSIMYAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYLRRTKDMF 882
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+VF ++G VS S KQ ++DS TEA
Sbjct: 883 LVYGGQEELVVKGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVVDSITEA 940
>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA92972.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 305
Score = 95.5 bits (236), Expect = 7e-21
Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 45/177 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 12 GIRIYRDRSKRLIGLRQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCSQTTDERNK 71
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS IPY SAIG +MY MLCTRPD+ +A+S SRYQ
Sbjct: 72 MSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYLIRTKDMF 131
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATE 36
+Y +D +S+SG+VF ++G VS S KQ L +S T+
Sbjct: 132 LVYGGQEELVVNDYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTLANSTTK 188
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 97.8 bits (242), Expect = 7e-21
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q IDK+L RF++Q+S FL K+ C T ER
Sbjct: 609 GIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDK 668
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQI------------------------ 144
MS IPY SAIG +MY M+CTRPD+ +A+S+ SRYQ
Sbjct: 669 MSDIPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVF 728
Query: 143 -------------YQDSS--------KSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
Y D+S +S+SG+VF ++G VS S KQ+ + DS TEA
Sbjct: 729 LVYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTEA 786
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 97.8 bits (242), Expect = 8e-21
Identities = 61/178 (34%), Positives = 89/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++ DS + FL K+ C +T ER
Sbjct: 1029 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNK 1088
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M +PY SAIG +MY MLCTRPD+ +A+S SRYQ
Sbjct: 1089 MGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMF 1148
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+VF ++G VS S KQ + DS TEA
Sbjct: 1149 LVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1206
>gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 97.1 bits (240), Expect = 1e-20
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++Q S + FL K+ C + ER
Sbjct: 393 GIRIYRERSKRLIGLSQSTYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNK 452
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQI------------------------ 144
MS IPY SAIGC+MY MLCTRPD+ +A+S SRYQ+
Sbjct: 453 MSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMF 512
Query: 143 -------------YQDSS--------KSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
Y D+S +S+S +VF ++G VS S KQ + DS TEA
Sbjct: 513 LVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEA 570
>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 97.1 bits (240), Expect = 1e-20
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++Q S + FL K+ C + ER
Sbjct: 503 GIRIYRERSKRLIGLSQSTYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDERNK 562
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQI------------------------ 144
MS IPY SAIGC+MY MLCTRPD+ +A+S SRYQ+
Sbjct: 563 MSVIPYASAIGCIMYAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYLRRTKDMF 622
Query: 143 -------------YQDSS--------KSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
Y D+S +S+S +VF ++G VS S KQ + DS TEA
Sbjct: 623 LVYGGQEELVVNGYTDASFQTDKDDFRSQSKFVFCLNGGAVSWKSSKQDTVADSTTEA 680
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 97.1 bits (240), Expect = 1e-20
Identities = 66/177 (37%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + +M+GL QA ID IL RF++Q S + FL F K KT +E +
Sbjct: 996 GIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLSKDQSPKTPEEIES 1055
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQIY----------------------- 141
M +PY SA+G LMY MLCTRPDIYFAV +VSR+Q
Sbjct: 1056 MKAVPYASAVGSLMYAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIKYLKRTRDYM 1115
Query: 140 ---------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
QDS KS SG VF + G +S S+KQ C+ D EA
Sbjct: 1116 LVFQSENLVPIGYTDSDFQSDQDSRKSTSGNVFVLGGGAISWRSIKQTCVADFTMEA 1172
>gb|ADJ18449.1| gag/pol protein, partial [Bryonia dioica]
Length = 1292
Score = 96.7 bits (239), Expect = 2e-20
Identities = 67/177 (37%), Positives = 87/177 (49%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI++ + NK L + QAS IDK+L R+ +Q+S + L F K C KT +E +
Sbjct: 1039 GIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVED 1098
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M IPY SA+G LMY MLCTRPDI ++V IVSRYQ
Sbjct: 1099 MRNIPYSSAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTRNYM 1158
Query: 146 -IY------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D+ KS SG VFT++G V SVKQ C+ DS EA
Sbjct: 1159 LVYGAKDLILTGYTDSDFQSDKDARKSTSGSVFTLNGGAVVWRSVKQTCIADSTMEA 1215
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana]
emb|CAB80804.1| putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 96.3 bits (238), Expect = 3e-20
Identities = 63/178 (35%), Positives = 88/178 (49%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ NK++GL Q + IDK+L RF++ DS + F+ T K+ C T ER
Sbjct: 676 GIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERER 735
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS+IPY SAIG +MY ML TRPD+ A+S+ SRYQ
Sbjct: 736 MSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKF 795
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+ F ++G VS S KQ + DS TEA
Sbjct: 796 LVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEA 853
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 96.3 bits (238), Expect = 3e-20
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 891 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNK 950
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS IPY SAIG +MY MLCTR D+ +A+S SRYQ
Sbjct: 951 MSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMF 1010
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+VF ++G VS S KQ + DS TEA
Sbjct: 1011 LVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1068
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 96.3 bits (238), Expect = 3e-20
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 978 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNK 1037
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS IPY SAIG +MY MLCTR D+ +A+S SRYQ
Sbjct: 1038 MSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDLGESHWIAVKNILKYLRRTKDMF 1097
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+VF ++G VS S KQ + DS TEA
Sbjct: 1098 LVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEA 1155
>gb|OIT08474.1| long chain acyl-coa synthetase 1 [Nicotiana attenuata]
Length = 921
Score = 95.9 bits (237), Expect = 4e-20
Identities = 66/177 (37%), Positives = 84/177 (47%), Gaps = 44/177 (24%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GI+L + ++LGL QA ID I+ RFS+QDS + L F K KT E
Sbjct: 80 GIKLMRYRKQRILGLSQALYIDTIVTRFSMQDSKKGILPFRHGIFLSKDQSPKTTDEIEK 139
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
M +PY SA+G LMY MLCTRPDI F V +VSR+Q
Sbjct: 140 MKAVPYASAVGSLMYAMLCTRPDICFVVGMVSRFQSNPGREHWTTVKHIIMYLKRTRDYM 199
Query: 146 -IY------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +DS KS SGYVFT+ G +S S+KQ C+ +S EA
Sbjct: 200 LVYHSGDLAPIGYTDSNFQSDRDSRKSTSGYVFTLGGGAISYRSIKQSCVANSTMEA 256
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 95.5 bits (236), Expect = 5e-20
Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 45/178 (25%)
Frame = -3
Query: 431 GIRLHQV*CNKMLGLFQASSIDKILERFSIQDSIERFLTFLAWNTSFKSLCRKTQKERGN 252
GIR+++ +++GL Q++ IDK+L+RF++QDS + FL K+ C +T ER
Sbjct: 751 GIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCPQTTDERNK 810
Query: 251 MSRIPYLSAIGCLMYGMLCTRPDIYFAVSIVSRYQ------------------------- 147
MS IPY SAIG +MY MLCT PD+ +A+S +RYQ
Sbjct: 811 MSVIPYASAIGSIMYAMLCTCPDVSYALSATNRYQSDPGESHWIAVKNILKYLRRTEDMF 870
Query: 146 -IY-------------------QDSSKSKSGYVFTIDGDTVS*MSVKQKCLMDSATEA 33
+Y +D +S+SG+VF ++G VS S KQ + DS TEA
Sbjct: 871 LVYGGQEELVVNGYTDASFQTDKDDFRSRSGFVFCLNGGVVSWKSSKQDTVADSTTEA 928