BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00028179
         (422 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     64   4e-09

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
 Frame = +2

Query: 59  HMSEECPLLADPFQ-EQLNTAINQQKHDSFGPSSNQ*WKNNLNLSWG*GHTHGYQ----- 220
           H+SEECPLL +    EQ+N A  + ++D F P+ N  W+N+ N +W  G++HG Q     
Sbjct: 208 HVSEECPLLGNNHALEQMNAAFQRPRNDPFSPTYNPGWRNHPNFAWNQGNSHGNQNFIPA 267

Query: 221 -------GANHRFQAPNYAPNGQFARAPMRPYQHMN 307
                  G    F APN   N  F      P+QH N
Sbjct: 268 SNQQFPRGNTVPFNAPNNFSNPPFPNQHPHPHQHTN 303