BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00027494
         (509 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...    93   4e-28
gb|PRQ53540.1| putative RNA-directed DNA polymerase [Rosa chinen...    93   4e-28
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...    86   4e-24
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    85   3e-23
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     82   3e-21
gb|PKI67027.1| hypothetical protein CRG98_012565 [Punica granatum]     96   2e-20
gb|PKI61249.1| hypothetical protein CRG98_018348 [Punica granatum]     62   1e-18
gb|PKI45901.1| hypothetical protein CRG98_033700 [Punica granatum]     92   2e-18
gb|PKI48889.1| hypothetical protein CRG98_030737 [Punica granatum]     92   2e-18
gb|PKI56506.1| hypothetical protein CRG98_023144 [Punica granatum]     91   4e-18
gb|PKI48613.1| hypothetical protein CRG98_031032 [Punica granatum]     91   4e-18
gb|PKI62640.1| hypothetical protein CRG98_016911 [Punica granatum]     62   6e-18
gb|PKI68495.1| hypothetical protein CRG98_011133 [Punica granatum]     88   1e-17
gb|PKI36969.1| hypothetical protein CRG98_042670 [Punica granatum]     85   2e-17
gb|PNX87829.1| retrovirus-related Pol polyprotein from transposo...    62   3e-17
gb|PKI47152.1| hypothetical protein CRG98_032466 [Punica granatum]     60   1e-16
gb|PKI46705.1| hypothetical protein CRG98_032900 [Punica granatum]     83   7e-16
emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera]    82   8e-15
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...    68   1e-14
gb|PKI65433.1| hypothetical protein CRG98_014172 [Punica granatum]     57   1e-14

>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score = 90.1 bits (222), Expect(2) = 4e-28
 Identities = 42/63 (66%), Positives = 48/63 (76%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPIS 340
           KG   IAR K+CCTLY++Y K+C GELN  +D    LWHKRLGHMS+KGLQV AKKS I 
Sbjct: 389 KGSLVIARGKMCCTLYKTYGKICKGELNVADDSSPSLWHKRLGHMSEKGLQVLAKKSLIP 448

Query: 341 FAK 349
           FAK
Sbjct: 449 FAK 451



 Score = 62.4 bits (150), Expect(2) = 4e-28
 Identities = 29/54 (53%), Positives = 42/54 (77%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           C ET++G KL+LKDVR+V  LRLNL+S G+LD Q + H+ G ++ +L KGS+V+
Sbjct: 341 CFETDLGNKLMLKDVRYVPGLRLNLMSTGVLDRQGFHHHGGDQKWRLTKGSLVI 394



 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VFQTF+EFHA VERETGR+LKC RSDNGGEYTS++  DYC KHGI+H KTIP
Sbjct: 526 VFQTFKEFHAMVERETGRTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIP 577


>gb|PRQ53540.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 321

 Score = 90.1 bits (222), Expect(2) = 4e-28
 Identities = 42/63 (66%), Positives = 48/63 (76%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPIS 340
           KG   IAR K+CCTLY++Y K+C GELN  +D    LWHKRLGHMS+KGLQV AKKS I 
Sbjct: 64  KGSLVIARGKMCCTLYKTYGKICKGELNVADDSSPSLWHKRLGHMSEKGLQVLAKKSLIP 123

Query: 341 FAK 349
           FAK
Sbjct: 124 FAK 126



 Score = 62.4 bits (150), Expect(2) = 4e-28
 Identities = 29/54 (53%), Positives = 42/54 (77%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           C ET++G KL+LKDVR+V  LRLNL+S G+LD Q + H+ G ++ +L KGS+V+
Sbjct: 16  CFETDLGNKLMLKDVRYVPGLRLNLMSTGVLDRQGFHHHGGDQKWRLTKGSLVI 69



 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 41/52 (78%), Positives = 46/52 (88%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VFQTF+EFHA VERETGR+LKC RSDNGGEYTS++  DYC KHGI+H KTIP
Sbjct: 201 VFQTFKEFHAMVERETGRTLKCIRSDNGGEYTSNEFRDYCSKHGIKHVKTIP 252


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1321

 Score = 77.0 bits (188), Expect(2) = 4e-24
 Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVE-DFFSELWHKRLGHMSKKGLQVPAKKSPI 337
           KG   +A+ KLCCTLY++Y KVC G+LNAVE D    LWH+RL H+S+KGLQ+ AK+S I
Sbjct: 380 KGSLVVAKGKLCCTLYKTYVKVCKGQLNAVENDASPNLWHRRLAHISEKGLQLLAKQSLI 439

Query: 338 SFAK 349
             AK
Sbjct: 440 PQAK 443



 Score = 62.0 bits (149), Expect(2) = 4e-24
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3

Query: 21  LETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           L+T VG  L+LKDVRH+ ++RLNLISV +LD + YEH +   R KL KGS+V+
Sbjct: 333 LQTGVGCTLILKDVRHIPDIRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVV 385



 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VFQ FQ+FHA VERETG+ LKC R+DNGGEY S +  DYC K+GIRHEKT+P
Sbjct: 518 VFQCFQQFHAMVERETGKQLKCIRTDNGGEYISKEFKDYCSKYGIRHEKTVP 569


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score = 73.6 bits (179), Expect(2) = 3e-23
 Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFS-ELWHKRLGHMSKKGLQVPAKKSPI 337
           KG   IA+     TLYR+ A++C GELNA +D  S +LWHKR+GHMS+KGLQ+ AKKS I
Sbjct: 387 KGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLI 446

Query: 338 SFAK 349
           S+AK
Sbjct: 447 SYAK 450



 Score = 62.8 bits (151), Expect(2) = 3e-23
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           C++TNVG  LVLKDVRHV +LR+NLIS   LD   YE Y  +++ +L KGS+V+
Sbjct: 339 CIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVI 392



 Score = 85.1 bits (209), Expect = 5e-16
 Identities = 38/52 (73%), Positives = 42/52 (80%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VFQ FQ+FHA VERETGR LK  RSDNGGEYTS +  +YC  HGIRHEKT+P
Sbjct: 525 VFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVP 576


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 67.8 bits (164), Expect(2) = 3e-21
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAV-EDFFSELWHKRLGHMSKKGLQVPAKKSPI 337
           KG   IA+     TLYR+ A++C GELNA  E+  ++LWHKR+GH S+KGLQ+ +KKS I
Sbjct: 388 KGALVIAKGVARGTLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLI 447

Query: 338 SFAK 349
           SF K
Sbjct: 448 SFTK 451



 Score = 61.6 bits (148), Expect(2) = 3e-21
 Identities = 29/54 (53%), Positives = 40/54 (74%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           C +TNVG  LVLKDVRHV +LR+NLIS   LD   YE+Y  +++ +L KG++V+
Sbjct: 340 CFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVI 393



 Score = 81.6 bits (200), Expect = 8e-15
 Identities = 36/52 (69%), Positives = 41/52 (78%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VFQ FQ+FHA VERETGR  K  R+DNGGEYTS +  +YC  HGIRHEKT+P
Sbjct: 526 VFQVFQKFHALVERETGRKRKRLRTDNGGEYTSREFEEYCSNHGIRHEKTVP 577


>gb|PKI67027.1| hypothetical protein CRG98_012565 [Punica granatum]
          Length = 325

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 69/171 (40%), Positives = 91/171 (53%), Gaps = 9/171 (5%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL------ 179
           CLET +  KL+LK VRHVLE+RLNLIS+G LD + Y +     R KL KGS+++      
Sbjct: 16  CLETKLCCKLLLKKVRHVLEIRLNLISIGQLDDEGYSNEFSSGRWKLSKGSLIVARGQKT 75

Query: 180 --LEPSFAVHYIGHMLKSVWEN*MQWRIFSRNYG-TKG*AT*VKKAYKYRQRSLPFPLLN 350
             L    A H  G +  +V E+     ++ R  G T        K + Y  R+       
Sbjct: 76  NTLYRLRARHNSGQV--NVAED-YPIELWHRRLGHTSDKDDHSMKVWAYPMRTKD----Q 128

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTI 503
           V + F+ FH  VERETG  LKC R+DNGGEY      +YC  H I+ EKT+
Sbjct: 129 VIEIFKNFHVAVERETGMKLKCVRADNGGEYKG-LFKNYCRTHEIKLEKTL 178


>gb|PKI61249.1| hypothetical protein CRG98_018348 [Punica granatum]
          Length = 189

 Score = 61.6 bits (148), Expect(2) = 1e-18
 Identities = 29/59 (49%), Positives = 42/59 (71%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPI 337
           KGL  +AR +   TLYR  A+   G++N VED+  ELWH+RLGH+S+KG+Q+ A+K  +
Sbjct: 64  KGLLIVARGQKTDTLYRLRARHNSGQINVVEDYPIELWHRRLGHISEKGIQILARKQSL 122



 Score = 59.3 bits (142), Expect(2) = 1e-18
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           CLET +G KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KG +++
Sbjct: 16  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGLLIV 69


>gb|PKI45901.1| hypothetical protein CRG98_033700 [Punica granatum]
          Length = 535

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 65/171 (38%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL------ 179
           CLET +G KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KG +++      
Sbjct: 91  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGLLIVARGQKT 150

Query: 180 --LEPSFAVHYIGHMLKSVWEN*MQWRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNV 353
             L    A H  G +  +V E+     ++ R  G        +K  +   R    P+  +
Sbjct: 151 DTLYRLRARHNSGQI--NVVED-YPIELWHRRLGHIS-----EKGIQILARKQSLPVKGM 202

Query: 354 FQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
             +  +    VERETG  LKC R+DNGGEY      +YC  HGI+ EKT+P
Sbjct: 203 HLSTCDHCLAVERETGMKLKCVRADNGGEYRG-PFENYCKTHGIKLEKTVP 252


>gb|PKI48889.1| hypothetical protein CRG98_030737 [Punica granatum]
          Length = 472

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
 Frame = +3

Query: 24  ETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLL--EPSFA 197
           +T +  KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KGS+++   + +  
Sbjct: 205 DTELSCKLLLKKVRHVPEIRLNLISTGQLDDEGYGNEFSNGRWKLSKGSLIVARGQKTDT 264

Query: 198 VHYIGHMLKSVWEN*MQ------WRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNVFQ 359
           ++ +     S   N  +      W    R+   K   +  KK + Y  R+       V +
Sbjct: 265 LYRLHARHNSSQVNVAEDYPIELWHRRLRHISEKDDHS--KKVWAYPMRTKD----QVTE 318

Query: 360 TFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
            F+ FH  VERETG  LKC R+DNG EY      +YC  HGI+ EKT+P
Sbjct: 319 IFKNFHVVVERETGMKLKCVRADNGCEYRG-PFENYCRNHGIKLEKTVP 366


>gb|PKI56506.1| hypothetical protein CRG98_023144 [Punica granatum]
          Length = 530

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 62/163 (38%), Positives = 83/163 (50%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLLEPSFA 197
           CLET +G KL+LK VRHVLE+RLNLIS G LD + Y +    ER K  KGS+++      
Sbjct: 157 CLETELGCKLLLKKVRHVLEIRLNLISTGQLDDEGYNNEFSDERWKFSKGSLIVAR---- 212

Query: 198 VHYIGHMLKSVWEN*MQWRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNVFQTFQEFH 377
               G    ++      +R+ +R+   +     V  A  Y       P+    +      
Sbjct: 213 ----GQKTDTL------YRLRARHNSGQ-----VNVAEDY-------PIELWHRRLGHIS 250

Query: 378 AKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
            KVERET   LKC R+DN GEY      +YC  HGI+ EKT+P
Sbjct: 251 EKVERETDMKLKCVRADNSGEYRG-PFENYCRTHGIKLEKTVP 292


>gb|PKI48613.1| hypothetical protein CRG98_031032 [Punica granatum]
          Length = 435

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 65/179 (36%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL------ 179
           CLET +G KL+LK VRHV E+RLNLIS+G L+ + Y +   + R KL KGS+++      
Sbjct: 225 CLETELGCKLLLKKVRHVPEIRLNLISMGQLNDEGYSNEFSNGRWKLSKGSLIVARGQKT 284

Query: 180 --LEPSFAVHYIGHMLKSVWEN*MQWRIFSRNYGTKG*AT*VKKAY-----KYRQRSLPF 338
             L    A H  G +  +   +   W    R+   KG     +K        + ++    
Sbjct: 285 DTLYRLRARHNSGQVNVAEDYSIKLWHRRLRHISEKGIQILARKQSLPVQDDHSRKVWAH 344

Query: 339 PLL---NVFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           P+     V   F+ FH  VERET   LKC R+D GGEY      +Y   HGI+ EKT+P
Sbjct: 345 PMRTKDQVTDIFKNFHVAVERETSMKLKCVRADYGGEYRG-PFENYYRTHGIKLEKTVP 402


>gb|PKI62640.1| hypothetical protein CRG98_016911 [Punica granatum]
          Length = 368

 Score = 61.6 bits (148), Expect(2) = 6e-18
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           CLET +G KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KGS+++
Sbjct: 16  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGSLIV 69



 Score = 56.6 bits (135), Expect(2) = 6e-18
 Identities = 27/59 (45%), Positives = 40/59 (67%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPI 337
           KG   +AR +   TLYR  A+   G++N VED+  ELWH+R GH+S+KG+Q+ A+K  +
Sbjct: 64  KGSLIVARGQKTDTLYRLRARHNSGQINVVEDYPIELWHRRHGHISEKGIQILARKQSL 122


>gb|PKI68495.1| hypothetical protein CRG98_011133 [Punica granatum]
          Length = 312

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 61/169 (36%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
 Frame = +3

Query: 24  ETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLL--EPSFA 197
           +T +G KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KGS+++   + +  
Sbjct: 78  KTELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNKFSNGRWKLSKGSLIVARGQKTDT 137

Query: 198 VHYIGHMLKSVWEN*MQ------WRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNVFQ 359
           ++ +     S   N ++      W     +   K   +  KK + Y  ++       V +
Sbjct: 138 LYRLRAKHNSGQINVVEDYPIELWHKRLGHISEKDDHS--KKVWAYSMKTKD----QVTE 191

Query: 360 TFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
            F+ FHA VE ETG   KC R DNGGEY      +YC  HGI+ E+T+P
Sbjct: 192 IFKNFHAAVEIETGMKQKCVRVDNGGEYRG-PFENYCRTHGIKLERTVP 239


>gb|PKI36969.1| hypothetical protein CRG98_042670 [Punica granatum]
          Length = 203

 Score = 85.1 bits (209), Expect = 2e-17
 Identities = 61/163 (37%), Positives = 77/163 (47%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLLEPSFA 197
           CLE  +G KL+LK V HV E+RLNLIS G LD + Y       R KL KGS+V+     +
Sbjct: 16  CLEAELGCKLLLKKVGHVPEIRLNLISTGQLDDKGYSS----GRWKLSKGSLVVAWDDHS 71

Query: 198 VHYIGHMLKSVWEN*MQWRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNVFQTFQEFH 377
                   K VW                        AY  R +        V + F+ FH
Sbjct: 72  --------KKVW------------------------AYPMRTKD------QVTEIFKNFH 93

Query: 378 AKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
             VERET  +LKC R+DNG EY      +YC  HGI+ +KT+P
Sbjct: 94  VIVERETSINLKCVRADNGSEYRD-LFENYCRTHGIKLKKTVP 135


>gb|PNX87829.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 216

 Score = 62.4 bits (150), Expect(2) = 3e-17
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           CLETN G +L LKDVRHV ++RLNLIS G+LD + Y    G  + KL K ++V+
Sbjct: 16  CLETNTGCRLTLKDVRHVPDMRLNLISTGLLDEEGYTSVFGDRKWKLSKSTLVI 69



 Score = 53.5 bits (127), Expect(2) = 3e-17
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
 Frame = +2

Query: 176 IARAKLCCTLYRSYAKVCMGELNAV-EDFFSELWHKRLGHMSKKGLQVPAKKSPISFAKC 352
           IAR K   TLY   AKV  G +NA+ ED   ELWHKRL H+S+KGLQ+ AK+  ++  K 
Sbjct: 69  IARGKKVNTLYVIEAKVNNGCVNALGEDSSVELWHKRLRHISEKGLQILAKRGTLAGVKG 128

Query: 353 ISDISGVPC 379
           +  +S  PC
Sbjct: 129 LK-MSLKPC 136


>gb|PKI47152.1| hypothetical protein CRG98_032466 [Punica granatum]
          Length = 360

 Score = 60.1 bits (144), Expect(2) = 1e-16
 Identities = 30/60 (50%), Positives = 40/60 (66%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPIS 340
           KGL  +AR +   TLYR YA    G+LN  ED+  ELWHKRL H+S+K +Q+ A+K  +S
Sbjct: 263 KGLLIVARGQKTDTLYRLYAGHNSGQLNVAEDYPIELWHKRLWHISEKSIQILARKQSLS 322



 Score = 53.5 bits (127), Expect(2) = 1e-16
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +3

Query: 24  ETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           ET +  KL+LK VRHVLE+RLNLIS G LD + Y +     R KL KG +++
Sbjct: 217 ETELDCKLLLKKVRHVLEIRLNLISTGQLDDEDYSNEFSSGRWKLSKGLLIV 268


>gb|PKI46705.1| hypothetical protein CRG98_032900 [Punica granatum]
          Length = 308

 Score = 83.2 bits (204), Expect = 7e-16
 Identities = 53/139 (38%), Positives = 74/139 (53%)
 Frame = +3

Query: 18  CLETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLLEPSFA 197
           CLET +G KL+LK VRHV E+RLNLIS G LD + Y +   + R KL KGS+++      
Sbjct: 16  CLETELGCKLLLKKVRHVPEIRLNLISTGQLDDEGYSNEFSNGRWKLSKGSLIVAR---- 71

Query: 198 VHYIGHMLKSVWEN*MQWRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLNVFQTFQEFH 377
               G    ++      +R+ +R+          +K + Y  R+       V + F+ FH
Sbjct: 72  ----GQKTDTL------YRLHARHNSDDH----SRKVWAYPMRTKD----QVIEIFKNFH 113

Query: 378 AKVERETGRSLKCFRSDNG 434
             VERETG  LKC R+DNG
Sbjct: 114 VTVERETGMKLKCVRADNG 132


>emb|CAN78912.1| hypothetical protein VITISV_004522 [Vitis vinifera]
          Length = 882

 Score = 81.6 bits (200), Expect = 8e-15
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
 Frame = +3

Query: 21  LETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVLLEPS--- 191
           LET+ G  L+LK+V+H+ ++R+NLIS+G LD +   +     + KL +GSMV+ +     
Sbjct: 206 LETSNGTMLILKNVKHIPDIRMNLISIGKLDDEGLYNTFLDSQWKLTRGSMVVAKRKKYS 265

Query: 192 ----FAVHYIGHMLKSVWEN*M--QWRIFSRNYGTKG*AT*VKKAYKYRQRSLPFPLLN- 350
                    I   + +V ++     W     +   KG    VKK      +     + + 
Sbjct: 266 SLYLMQARVIDSSINAVNDDGTIELWHNKLDHMSEKGLMILVKKNLLSDMKKGSLKIKDD 325

Query: 351 ---------------VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGI 485
                          V + F++FHA VER++G  LKC ++DNGGEY      +YC +HGI
Sbjct: 326 HSRKIWVYTLKTKDQVLKVFKQFHALVERQSGEKLKCIQTDNGGEYYG-PFDEYCRQHGI 384

Query: 486 RHEKT 500
           +H+KT
Sbjct: 385 QHQKT 389


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1314

 Score = 59.3 bits (142), Expect(2) = 1e-14
 Identities = 25/50 (50%), Positives = 35/50 (70%)
 Frame = +2

Query: 176 IARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAK 325
           +AR K   +LY    K+C G++N  +D   ELWH+RLGHMS+KGL++ AK
Sbjct: 387 VARGKKEGSLYTMQGKICKGDMNVAQDASKELWHRRLGHMSEKGLEILAK 436



 Score = 47.8 bits (112), Expect(2) = 1e-14
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 21  LETNVGWKLVLKDVRHVLELRLNLISVGMLDLQSYEHYIGHERLKLIKGSMVL 179
           L T  G KL+LK+VRHV ++RLNLISV  LD     +    +R KL +GSM++
Sbjct: 335 LMTENGNKLMLKEVRHVPDMRLNLISVSKLDEAGMINQFSADRWKLSRGSMIV 387



 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 33/52 (63%), Positives = 35/52 (67%)
 Frame = +3

Query: 351 VFQTFQEFHAKVERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           V Q F+EFHA VER TGR LKC R+DNGGEY       YC  HGIRHEK  P
Sbjct: 519 VLQAFKEFHALVERATGRKLKCIRTDNGGEYLG-PFEYYCKTHGIRHEKVPP 569


>gb|PKI65433.1| hypothetical protein CRG98_014172 [Punica granatum]
          Length = 620

 Score = 57.4 bits (137), Expect(2) = 1e-14
 Identities = 26/59 (44%), Positives = 40/59 (67%)
 Frame = +2

Query: 161 KGLNGIARAKLCCTLYRSYAKVCMGELNAVEDFFSELWHKRLGHMSKKGLQVPAKKSPI 337
           KG   +AR +   TLYR + +   G++N  ED+  ELWH+RLGH+S+KG+Q+ A+K  +
Sbjct: 68  KGSLIVARGQKTDTLYRLHTRHNSGQVNVAEDYPIELWHRRLGHISEKGIQILARKQSL 126



 Score = 49.7 bits (117), Expect(2) = 1e-14
 Identities = 23/41 (56%), Positives = 28/41 (68%)
 Frame = +3

Query: 384 VERETGRSLKCFRSDNGGEYTSHKLGDYCVKHGIRHEKTIP 506
           VER+TG  LKC R+DNG EY      +YC  HGI+ EKT+P
Sbjct: 131 VERKTGMKLKCVRADNGDEYRG-PFENYCRSHGIKLEKTVP 170