BLASTX nr result
ID: Ophiopogon27_contig00022401
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00022401
(358 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6... 156 2e-45
ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6... 144 1e-40
ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III s... 143 2e-40
ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III s... 143 2e-40
ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6... 140 1e-38
ref|XP_009386152.1| PREDICTED: DNA-directed RNA polymerase III s... 135 2e-37
ref|XP_009404340.1| PREDICTED: DNA-directed RNA polymerase III s... 129 9e-35
gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia s... 128 1e-34
gb|OAY75962.1| DNA-directed RNA polymerase III subunit RPC6 [Ana... 126 5e-34
ref|XP_019705973.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 127 6e-34
ref|XP_020082464.1| DNA-directed RNA polymerase III subunit RPC6... 126 1e-33
ref|XP_020082463.1| DNA-directed RNA polymerase III subunit RPC6... 126 1e-33
gb|OVA07786.1| RNA polymerase Rpc34 [Macleaya cordata] 124 4e-33
gb|OVA19488.1| RNA polymerase Rpc34 [Macleaya cordata] 124 8e-33
ref|XP_021609496.1| DNA-directed RNA polymerase III subunit RPC6... 120 3e-31
gb|PLY81845.1| hypothetical protein LSAT_3X23460 [Lactuca sativa] 115 6e-30
ref|XP_021681807.1| DNA-directed RNA polymerase III subunit RPC6... 116 8e-30
ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III s... 116 8e-30
ref|XP_023768775.1| probable DNA-directed RNA polymerase III sub... 115 2e-29
ref|XP_021672680.1| DNA-directed RNA polymerase III subunit RPC6... 115 2e-29
>ref|XP_020246712.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
officinalis]
ref|XP_020246713.1| DNA-directed RNA polymerase III subunit RPC6 [Asparagus
officinalis]
gb|ONK58492.1| uncharacterized protein A4U43_C09F13600 [Asparagus officinalis]
Length = 231
Score = 156 bits (394), Expect = 2e-45
Identities = 69/92 (75%), Positives = 84/92 (91%), Gaps = 1/92 (1%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
+ITLQQ+YEI+ELMVLDKEV+K++SSGVG+FSHV G++CYR+++ GPKEGA +SIPC
Sbjct: 140 EITLQQVYEILELMVLDKEVEKVRSSGVGDFSHVPEGRDCYRVSRGEGGPKEGAFASIPC 199
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWL-GIDF 281
GVCPRI+ECTPDGVISP NCVYYNKWL G+DF
Sbjct: 200 GVCPRIHECTPDGVISPINCVYYNKWLGGLDF 231
>ref|XP_020691279.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
ref|XP_020691280.1| DNA-directed RNA polymerase III subunit RPC6 [Dendrobium catenatum]
gb|PKU75411.1| hypothetical protein MA16_Dca020480 [Dendrobium catenatum]
Length = 231
Score = 144 bits (362), Expect = 1e-40
Identities = 61/92 (66%), Positives = 77/92 (83%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
+D +LQQI EI+ MVLDKE+++L SSGVG+F H+ AG+ECYR K R+GPKEG S++P
Sbjct: 140 IDFSLQQIKEIMSAMVLDKELEELISSGVGDFFHIRAGRECYRSLKGRDGPKEGFFSAVP 199
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
CGVCPRINEC+PDG+ISP CVYY KWLG+D+
Sbjct: 200 CGVCPRINECSPDGIISPNTCVYYQKWLGLDY 231
>ref|XP_008813399.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
dactylifera]
ref|XP_008813400.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Phoenix
dactylifera]
Length = 232
Score = 143 bits (361), Expect = 2e-40
Identities = 63/92 (68%), Positives = 77/92 (83%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T+QQI EIV MVLDKEV++LKS+G+G+FS V +GK CYR K REGPK GA SSIP
Sbjct: 141 VECTMQQIVEIVNAMVLDKEVEELKSTGIGDFSKVQSGKICYRSLKGREGPKVGAFSSIP 200
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
CGVCPRI+ECTPDG+ISP C+YYNKWL ++F
Sbjct: 201 CGVCPRISECTPDGIISPKTCIYYNKWLKLEF 232
>ref|XP_010927732.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927733.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927734.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
ref|XP_010927735.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6 [Elaeis
guineensis]
Length = 237
Score = 143 bits (360), Expect = 2e-40
Identities = 63/92 (68%), Positives = 77/92 (83%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T+QQI EIV MVLDKE+++LKS+G+G+FS V +GK CY+ K REGPK GALSSIP
Sbjct: 146 VECTMQQIVEIVNAMVLDKEIEELKSTGIGDFSKVPSGKICYKSLKGREGPKIGALSSIP 205
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
CGVCPRI ECTPDG+ISP CVYYNKWL ++F
Sbjct: 206 CGVCPRIGECTPDGIISPKTCVYYNKWLSLEF 237
>ref|XP_020574967.1| DNA-directed RNA polymerase III subunit RPC6 [Phalaenopsis
equestris]
Length = 282
Score = 140 bits (352), Expect = 1e-38
Identities = 61/91 (67%), Positives = 75/91 (82%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
+ +LQQI EI+ M LDKE+++L SSGVGEFS++ AGK+CYR + R GPK G LSS+PC
Sbjct: 192 ECSLQQIQEILVAMYLDKEIEELISSGVGEFSNIQAGKKCYRSLRGRGGPKAGGLSSVPC 251
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
GVCPRINEC+PDG+ISP CVYY KWLG+DF
Sbjct: 252 GVCPRINECSPDGIISPKTCVYYQKWLGLDF 282
>ref|XP_009386152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
acuminata subsp. malaccensis]
ref|XP_009386160.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
acuminata subsp. malaccensis]
Length = 237
Score = 135 bits (341), Expect = 2e-37
Identities = 60/89 (67%), Positives = 72/89 (80%)
Frame = +3
Query: 15 TLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPCGV 194
T+QQ+ EIV + LDKE+++LKS+GVGEFS V GK CYR + RE P+ G LSSIPCGV
Sbjct: 149 TMQQVLEIVRALALDKEIEELKSTGVGEFSTVQTGKVCYRSLRGREAPRVGHLSSIPCGV 208
Query: 195 CPRINECTPDGVISPTNCVYYNKWLGIDF 281
CPRI+ECTPDGVISP CVYYNKWL ++F
Sbjct: 209 CPRISECTPDGVISPKTCVYYNKWLKLEF 237
>ref|XP_009404340.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
acuminata subsp. malaccensis]
ref|XP_018684305.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Musa
acuminata subsp. malaccensis]
Length = 237
Score = 129 bits (323), Expect = 9e-35
Identities = 55/92 (59%), Positives = 74/92 (80%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T+QQ+ EIV + LDKE+++LKS+GV EFS V +GK CYR ++ R+GP G LSSIP
Sbjct: 146 VECTMQQVLEIVRALALDKEIEELKSTGVAEFSMVQSGKICYRRSRGRQGPSVGHLSSIP 205
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
CG+CPRI+ECTP+GVISP CVYY +WL ++F
Sbjct: 206 CGMCPRISECTPEGVISPNTCVYYKQWLKLEF 237
>gb|PKA46474.1| hypothetical protein AXF42_Ash012607 [Apostasia shenzhenica]
Length = 230
Score = 128 bits (322), Expect = 1e-34
Identities = 56/91 (61%), Positives = 72/91 (79%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
+ T+QQI EI+ MVLDKE+++L SSGVG+ SH+ AG++CYR ++ R G +G+ +SIPC
Sbjct: 140 ECTMQQIKEIMGAMVLDKEIEELNSSGVGDSSHIPAGRKCYRSSRGRAGSNDGSFASIPC 199
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
GVCPRI EC PDGVISP CVYY KWL I+F
Sbjct: 200 GVCPRIYECIPDGVISPETCVYYQKWLDIEF 230
>gb|OAY75962.1| DNA-directed RNA polymerase III subunit RPC6 [Ananas comosus]
Length = 208
Score = 126 bits (316), Expect = 5e-34
Identities = 59/91 (64%), Positives = 73/91 (80%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
D TLQQI EIV+ MVLDKE++++KS+G G+FS V AG+ CYR + R P GALS+IPC
Sbjct: 119 DFTLQQIKEIVQAMVLDKELEEVKSTGDGDFSAVPAGRPCYRRFE-RRAPIAGALSAIPC 177
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
GVCPRI+ECTPDGVISP C+Y+ KWL +DF
Sbjct: 178 GVCPRISECTPDGVISPNTCIYFTKWLELDF 208
>ref|XP_019705973.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc6-like [Elaeis guineensis]
Length = 240
Score = 127 bits (318), Expect = 6e-34
Identities = 56/92 (60%), Positives = 71/92 (77%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T+ I EIV MVLDKEV++LKS+G+G+FS +GK CYR +SR G K GA SSIP
Sbjct: 149 VECTMHHIVEIVNAMVLDKEVEELKSTGIGDFSKAQSGKICYRSLRSRGGLKIGAFSSIP 208
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
CGVCPRI EC P+G+ISP C+YYNKWL ++F
Sbjct: 209 CGVCPRIRECAPNGIISPKTCIYYNKWLKMEF 240
>ref|XP_020082464.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
ref|XP_020082466.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
ref|XP_020082467.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
ref|XP_020082468.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
ref|XP_020082469.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
ref|XP_020082470.1| DNA-directed RNA polymerase III subunit RPC6 isoform X2 [Ananas
comosus]
Length = 236
Score = 126 bits (316), Expect = 1e-33
Identities = 59/91 (64%), Positives = 73/91 (80%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
D TLQQI EIV+ MVLDKE++++KS+G G+FS V AG+ CYR + R P GALS+IPC
Sbjct: 147 DFTLQQIKEIVQAMVLDKELEEVKSTGDGDFSAVPAGRPCYRRFE-RRAPIAGALSAIPC 205
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
GVCPRI+ECTPDGVISP C+Y+ KWL +DF
Sbjct: 206 GVCPRISECTPDGVISPNTCIYFTKWLELDF 236
>ref|XP_020082463.1| DNA-directed RNA polymerase III subunit RPC6 isoform X1 [Ananas
comosus]
Length = 247
Score = 126 bits (316), Expect = 1e-33
Identities = 59/91 (64%), Positives = 73/91 (80%)
Frame = +3
Query: 9 DITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIPC 188
D TLQQI EIV+ MVLDKE++++KS+G G+FS V AG+ CYR + R P GALS+IPC
Sbjct: 158 DFTLQQIKEIVQAMVLDKELEEVKSTGDGDFSAVPAGRPCYRRFE-RRAPIAGALSAIPC 216
Query: 189 GVCPRINECTPDGVISPTNCVYYNKWLGIDF 281
GVCPRI+ECTPDGVISP C+Y+ KWL +DF
Sbjct: 217 GVCPRISECTPDGVISPNTCIYFTKWLELDF 247
>gb|OVA07786.1| RNA polymerase Rpc34 [Macleaya cordata]
Length = 236
Score = 124 bits (312), Expect = 4e-33
Identities = 53/88 (60%), Positives = 69/88 (78%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T++QI EIV+ +VLD EV KL S+G G+F+H+ G ECYR + P+ GA++SIP
Sbjct: 147 VECTIKQIAEIVQTLVLDNEVVKLSSTGTGDFTHIPVGTECYRCSNKGGVPRTGAMASIP 206
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWL 269
CGVCPRIN+CTPDG+ISPT CVYY KWL
Sbjct: 207 CGVCPRINDCTPDGIISPTTCVYYKKWL 234
>gb|OVA19488.1| RNA polymerase Rpc34 [Macleaya cordata]
Length = 236
Score = 124 bits (310), Expect = 8e-33
Identities = 52/88 (59%), Positives = 69/88 (78%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREGPKEGALSSIP 185
++ T++QI EIV+ +VLD EV K+ S+G G+F+H+ G ECYR + P+ GA++SIP
Sbjct: 147 VECTIKQIAEIVQTLVLDNEVVKISSTGTGDFTHIPVGTECYRCSNKGGVPRTGAMASIP 206
Query: 186 CGVCPRINECTPDGVISPTNCVYYNKWL 269
CGVCPRIN+CTPDG+ISPT CVYY KWL
Sbjct: 207 CGVCPRINDCTPDGIISPTTCVYYKKWL 234
>ref|XP_021609496.1| DNA-directed RNA polymerase III subunit RPC6 [Manihot esculenta]
gb|OAY52825.1| hypothetical protein MANES_04G114300 [Manihot esculenta]
gb|OAY52826.1| hypothetical protein MANES_04G114300 [Manihot esculenta]
Length = 236
Score = 120 bits (300), Expect = 3e-31
Identities = 54/92 (58%), Positives = 71/92 (77%), Gaps = 3/92 (3%)
Frame = +3
Query: 3 NMDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKSREG---PKEGAL 173
N+++T QQI EIV+ +VLD E+ +LKS+G+GEF+ + GK CY+ G PK GA+
Sbjct: 143 NVELTKQQIDEIVKALVLDNEIIELKSNGMGEFASIPVGKICYKCISKGSGGGEPKIGAM 202
Query: 174 SSIPCGVCPRINECTPDGVISPTNCVYYNKWL 269
+SIPCGVCPRI++CTPDG+ISP CVYYNKWL
Sbjct: 203 ASIPCGVCPRIHQCTPDGIISPQTCVYYNKWL 234
>gb|PLY81845.1| hypothetical protein LSAT_3X23460 [Lactuca sativa]
Length = 198
Score = 115 bits (288), Expect = 6e-30
Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 NMDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITK--SREGPKEGALS 176
N+D T QQI EI++ MVLD ++ ++KS+G+GE+ + G CYR T S +G K GA+
Sbjct: 106 NIDCTSQQISEILKSMVLDNKIIEVKSTGLGEYHSIPIGNLCYRYTTGDSAQGLKTGAMV 165
Query: 177 SIPCGVCPRINECTPDGVISPTNCVYYNKWL 269
SIPCGVCPRI ECTPDG+ISPT CVYY KWL
Sbjct: 166 SIPCGVCPRIRECTPDGLISPTTCVYYTKWL 196
>ref|XP_021681807.1| DNA-directed RNA polymerase III subunit RPC6-like [Hevea
brasiliensis]
Length = 236
Score = 116 bits (290), Expect = 8e-30
Identities = 53/92 (57%), Positives = 73/92 (79%), Gaps = 3/92 (3%)
Frame = +3
Query: 3 NMDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYR-ITKSREG--PKEGAL 173
N+++T QQI EI++ +VLD E+ +LKS+G+GEF+ + GK CY+ I+K G P+ GA+
Sbjct: 143 NVELTKQQIDEILKALVLDNEIIELKSNGMGEFASIPVGKICYKCISKGNIGGEPRTGAM 202
Query: 174 SSIPCGVCPRINECTPDGVISPTNCVYYNKWL 269
+SIPCGVCPRI +CTPDG+ISP CVYY+KWL
Sbjct: 203 ASIPCGVCPRIRQCTPDGIISPQTCVYYSKWL 234
>ref|XP_015872858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus
jujuba]
Length = 238
Score = 116 bits (290), Expect = 8e-30
Identities = 53/90 (58%), Positives = 66/90 (73%), Gaps = 2/90 (2%)
Frame = +3
Query: 6 MDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITKS--REGPKEGALSS 179
++ + QQI EI+ +VLD V +KS+G+GEF + GK CY+ T R PK GA++S
Sbjct: 147 VEFSTQQIEEILRALVLDNVVMDVKSNGMGEFDSIPVGKVCYKCTNKGVRGEPKAGAMAS 206
Query: 180 IPCGVCPRINECTPDGVISPTNCVYYNKWL 269
IPCGVCPRIN CTPDG+ISPT CVYYNKWL
Sbjct: 207 IPCGVCPRINHCTPDGIISPTTCVYYNKWL 236
>ref|XP_023768775.1| probable DNA-directed RNA polymerase III subunit RPC6 [Lactuca
sativa]
ref|XP_023768776.1| probable DNA-directed RNA polymerase III subunit RPC6 [Lactuca
sativa]
ref|XP_023768777.1| probable DNA-directed RNA polymerase III subunit RPC6 [Lactuca
sativa]
ref|XP_023768778.1| probable DNA-directed RNA polymerase III subunit RPC6 [Lactuca
sativa]
Length = 234
Score = 115 bits (288), Expect = 2e-29
Identities = 54/91 (59%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 NMDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYRITK--SREGPKEGALS 176
N+D T QQI EI++ MVLD ++ ++KS+G+GE+ + G CYR T S +G K GA+
Sbjct: 142 NIDCTSQQISEILKSMVLDNKIIEVKSTGLGEYHSIPIGNLCYRYTTGDSAQGLKTGAMV 201
Query: 177 SIPCGVCPRINECTPDGVISPTNCVYYNKWL 269
SIPCGVCPRI ECTPDG+ISPT CVYY KWL
Sbjct: 202 SIPCGVCPRIRECTPDGLISPTTCVYYTKWL 232
>ref|XP_021672680.1| DNA-directed RNA polymerase III subunit RPC6-like [Hevea
brasiliensis]
ref|XP_021672688.1| DNA-directed RNA polymerase III subunit RPC6-like [Hevea
brasiliensis]
Length = 236
Score = 115 bits (287), Expect = 2e-29
Identities = 53/92 (57%), Positives = 72/92 (78%), Gaps = 3/92 (3%)
Frame = +3
Query: 3 NMDITLQQIYEIVELMVLDKEVDKLKSSGVGEFSHVMAGKECYR-ITKSREG--PKEGAL 173
N+++T QQI EIV+ +VLD E+ ++KS+G+GEF+ + GK CY+ I K G PK GA+
Sbjct: 143 NVELTKQQIEEIVKALVLDDEIIEVKSNGMGEFASIPVGKICYKCIRKGSIGGEPKTGAM 202
Query: 174 SSIPCGVCPRINECTPDGVISPTNCVYYNKWL 269
+SIPCGVCPR+ +CTPDG+ISP CVYY+KWL
Sbjct: 203 ASIPCGVCPRMRQCTPDGIISPQTCVYYSKWL 234