BLASTX nr result

ID: Ophiopogon27_contig00021437 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00021437
         (498 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020252976.1| RAP domain-containing protein, chloroplastic...    89   3e-17

>ref|XP_020252976.1| RAP domain-containing protein, chloroplastic [Asparagus
           officinalis]
 ref|XP_020252977.1| RAP domain-containing protein, chloroplastic [Asparagus
           officinalis]
          Length = 659

 Score = 88.6 bits (218), Expect = 3e-17
 Identities = 45/73 (61%), Positives = 51/73 (69%)
 Frame = -3

Query: 220 GFCNPKLELSLIRRKVCECRVGSSSVDLRVEDEQEDEEDPTWKLQFLGEIXXXXXXXXXX 41
           GFCNPKLEL+   R+V  C VGSSSVDL+ E+  ++EEDPTWKLQFLGEI          
Sbjct: 35  GFCNPKLELTFQSRRVYTCGVGSSSVDLKAEESPKEEEDPTWKLQFLGEIKTSTEPKKKP 94

Query: 40  XXXSRLLKETDSM 2
              SRLLKETDSM
Sbjct: 95  KGASRLLKETDSM 107


Top