BLASTX nr result
ID: Ophiopogon27_contig00020632
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00020632
(441 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020270225.1| DNA repair helicase XPB1 isoform X3 [Asparag... 104 4e-23
ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparag... 104 4e-23
ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparag... 104 4e-23
ref|XP_022869021.1| DNA repair helicase XPB1-like [Olea europaea... 97 6e-23
ref|XP_020245551.1| DNA repair helicase XPB1-like [Asparagus off... 101 5e-22
gb|ONK57484.1| uncharacterized protein A4U43_C09F980 [Asparagus ... 101 5e-22
ref|XP_023881498.1| general transcription and DNA repair factor ... 101 5e-22
gb|PIN19680.1| RNA polymerase II transcription initiation [Handr... 101 5e-22
gb|POE74164.1| dna repair helicase xpb1 [Quercus suber] 101 5e-22
ref|XP_011080928.1| DNA repair helicase XPB1 [Sesamum indicum] 100 7e-22
ref|XP_016500687.1| PREDICTED: DNA repair helicase XPB1-like [Ni... 98 2e-21
gb|KJB20625.1| hypothetical protein B456_003G156900 [Gossypium r... 99 3e-21
gb|KJB20626.1| hypothetical protein B456_003G156900 [Gossypium r... 99 4e-21
gb|KJB20624.1| hypothetical protein B456_003G156900 [Gossypium r... 99 4e-21
ref|XP_009375027.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x... 99 4e-21
ref|XP_016716142.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair h... 99 4e-21
ref|XP_012471789.1| PREDICTED: DNA repair helicase XPB1-like iso... 99 4e-21
ref|XP_012471788.1| PREDICTED: DNA repair helicase XPB1-like iso... 99 4e-21
ref|XP_010275687.1| PREDICTED: DNA repair helicase XPB1 [Nelumbo... 98 6e-21
ref|XP_018623264.1| PREDICTED: DNA repair helicase XPB1 [Nicotia... 98 7e-21
>ref|XP_020270225.1| DNA repair helicase XPB1 isoform X3 [Asparagus officinalis]
Length = 667
Score = 104 bits (259), Expect = 4e-23
Identities = 58/80 (72%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHG 266
LSKVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG
Sbjct: 587 LSKVLSAGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG 646
Query: 265 QAKNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRHHLFRKR+
Sbjct: 647 --KSKPKDPAKRHHLFRKRY 664
>ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
ref|XP_020270224.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
Length = 765
Score = 104 bits (259), Expect = 4e-23
Identities = 58/80 (72%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHG 266
LSKVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG
Sbjct: 685 LSKVLSAGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG 744
Query: 265 QAKNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRHHLFRKR+
Sbjct: 745 --KSKPKDPAKRHHLFRKRY 762
>ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
ref|XP_020270222.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
gb|ONK66043.1| uncharacterized protein A4U43_C06F3580 [Asparagus officinalis]
Length = 766
Score = 104 bits (259), Expect = 4e-23
Identities = 58/80 (72%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHG 266
LSKVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG
Sbjct: 686 LSKVLSAGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG 745
Query: 265 QAKNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRHHLFRKR+
Sbjct: 746 --KSKPKDPAKRHHLFRKRY 763
>ref|XP_022869021.1| DNA repair helicase XPB1-like [Olea europaea var. sylvestris]
Length = 124
Score = 96.7 bits (239), Expect = 6e-23
Identities = 53/79 (67%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQ 263
L KVLSAGDD VGLEQLEED D IALQK MVYMEY+TG KK HGQ
Sbjct: 45 LGKVLSAGDDAVGLEQLEEDTDGIALQKARRSAGSMSAMSGASGMVYMEYSTGQKKQHGQ 104
Query: 262 AKNKPKDPAKRHHLFRKRF 206
AK+K KDPAKRHHLF+KRF
Sbjct: 105 AKSKFKDPAKRHHLFKKRF 123
>ref|XP_020245551.1| DNA repair helicase XPB1-like [Asparagus officinalis]
Length = 639
Score = 101 bits (251), Expect = 5e-22
Identities = 56/78 (71%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Frame = -3
Query: 433 KVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQA 260
KVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG
Sbjct: 561 KVLSAGDDVVGLEQLEEDADDIALQKARRSAGSMSALSGASGMVYMEYNTGQGKKGHG-- 618
Query: 259 KNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRHHLFRKR+
Sbjct: 619 KSKPKDPAKRHHLFRKRY 636
>gb|ONK57484.1| uncharacterized protein A4U43_C09F980 [Asparagus officinalis]
Length = 689
Score = 101 bits (251), Expect = 5e-22
Identities = 56/78 (71%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Frame = -3
Query: 433 KVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQA 260
KVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG
Sbjct: 611 KVLSAGDDVVGLEQLEEDADDIALQKARRSAGSMSALSGASGMVYMEYNTGQGKKGHG-- 668
Query: 259 KNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRHHLFRKR+
Sbjct: 669 KSKPKDPAKRHHLFRKRY 686
>ref|XP_023881498.1| general transcription and DNA repair factor IIH helicase subunit
XPB1-like [Quercus suber]
Length = 764
Score = 101 bits (251), Expect = 5e-22
Identities = 52/78 (66%), Positives = 56/78 (71%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQA 260
LSKVLSAGDD VGLEQLEEDADDIAL K MVYMEY+TG+K GQ
Sbjct: 686 LSKVLSAGDDAVGLEQLEEDADDIALHKARRFMGSMSAMSGANGMVYMEYSTGRKMQGQL 745
Query: 259 KNKPKDPAKRHHLFRKRF 206
K KPKDPAKRHHLF++RF
Sbjct: 746 KGKPKDPAKRHHLFKRRF 763
>gb|PIN19680.1| RNA polymerase II transcription initiation [Handroanthus
impetiginosus]
Length = 766
Score = 101 bits (251), Expect = 5e-22
Identities = 54/79 (68%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQ 263
L KVLSAGDD VGLEQLEEDADDIALQK MVYMEY TG KK HGQ
Sbjct: 687 LGKVLSAGDDAVGLEQLEEDADDIALQKARRSVGSMSAMSGASGMVYMEYGTGQKKLHGQ 746
Query: 262 AKNKPKDPAKRHHLFRKRF 206
K+KPKDP+KRHHLF+KRF
Sbjct: 747 TKSKPKDPSKRHHLFKKRF 765
>gb|POE74164.1| dna repair helicase xpb1 [Quercus suber]
Length = 903
Score = 101 bits (251), Expect = 5e-22
Identities = 52/78 (66%), Positives = 56/78 (71%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQA 260
LSKVLSAGDD VGLEQLEEDADDIAL K MVYMEY+TG+K GQ
Sbjct: 825 LSKVLSAGDDAVGLEQLEEDADDIALHKARRFMGSMSAMSGANGMVYMEYSTGRKMQGQL 884
Query: 259 KNKPKDPAKRHHLFRKRF 206
K KPKDPAKRHHLF++RF
Sbjct: 885 KGKPKDPAKRHHLFKRRF 902
>ref|XP_011080928.1| DNA repair helicase XPB1 [Sesamum indicum]
Length = 766
Score = 100 bits (250), Expect = 7e-22
Identities = 54/79 (68%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQ 263
L KVLSAGDD VGLEQLEEDADDIALQK MVYMEY+TG KK HGQ
Sbjct: 687 LGKVLSAGDDAVGLEQLEEDADDIALQKARRSAGSMSAMSGASGMVYMEYSTGQKKPHGQ 746
Query: 262 AKNKPKDPAKRHHLFRKRF 206
K+KPKDP KRHHLF+KRF
Sbjct: 747 MKSKPKDPNKRHHLFKKRF 765
>ref|XP_016500687.1| PREDICTED: DNA repair helicase XPB1-like [Nicotiana tabacum]
ref|XP_016500745.1| PREDICTED: DNA repair helicase XPB1-like [Nicotiana tabacum]
Length = 351
Score = 97.8 bits (242), Expect = 2e-21
Identities = 51/78 (65%), Positives = 55/78 (70%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQA 260
L KVL+AGDD VGLEQL+EDADDIALQK MVYMEYNTGKK G
Sbjct: 273 LGKVLNAGDDAVGLEQLDEDADDIALQKARRYVGSMSAMSGAKGMVYMEYNTGKKQGGLI 332
Query: 259 KNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRH LF+KRF
Sbjct: 333 KSKPKDPAKRHQLFKKRF 350
>gb|KJB20625.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 497
Score = 98.6 bits (244), Expect = 3e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 416 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 475
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 476 GQNKSKPKDPSKRHHLFKKRF 496
>gb|KJB20626.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 724
Score = 98.6 bits (244), Expect = 4e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 643 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 702
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 703 GQNKSKPKDPSKRHHLFKKRF 723
>gb|KJB20624.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 747
Score = 98.6 bits (244), Expect = 4e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 666 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 725
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 726 GQNKSKPKDPSKRHHLFKKRF 746
>ref|XP_009375027.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x bretschneideri]
ref|XP_009375030.1| PREDICTED: DNA repair helicase XPB1 [Pyrus x bretschneideri]
Length = 767
Score = 98.6 bits (244), Expect = 4e-21
Identities = 54/80 (67%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHG 266
LSKVLSAGDD VGLEQLEEDADDIAL K MVYMEY+TG K G G
Sbjct: 687 LSKVLSAGDDAVGLEQLEEDADDIALHKARRFSGSMSAMSGANGMVYMEYSTGRNKFGKG 746
Query: 265 QAKNKPKDPAKRHHLFRKRF 206
Q K KPKDPAKRHHLF+KRF
Sbjct: 747 QIKGKPKDPAKRHHLFKKRF 766
>ref|XP_016716142.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase XPB1-like
[Gossypium hirsutum]
Length = 770
Score = 98.6 bits (244), Expect = 4e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 689 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 748
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 749 GQNKSKPKDPSKRHHLFKKRF 769
>ref|XP_012471789.1| PREDICTED: DNA repair helicase XPB1-like isoform X2 [Gossypium
raimondii]
gb|KJB20623.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 770
Score = 98.6 bits (244), Expect = 4e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 689 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 748
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 749 GQNKSKPKDPSKRHHLFKKRF 769
>ref|XP_012471788.1| PREDICTED: DNA repair helicase XPB1-like isoform X1 [Gossypium
raimondii]
gb|KJB20627.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 796
Score = 98.6 bits (244), Expect = 4e-21
Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGK---KGH 269
L KVL+AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GH
Sbjct: 715 LGKVLTAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGH 774
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRHHLF+KRF
Sbjct: 775 GQNKSKPKDPSKRHHLFKKRF 795
>ref|XP_010275687.1| PREDICTED: DNA repair helicase XPB1 [Nelumbo nucifera]
Length = 769
Score = 98.2 bits (243), Expect = 6e-21
Identities = 53/81 (65%), Positives = 57/81 (70%), Gaps = 3/81 (3%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GH 269
L KVLSAGDDVVGLEQLEEDADDIALQK MVYMEYNTG+ G
Sbjct: 688 LGKVLSAGDDVVGLEQLEEDADDIALQKARRSVGSMSAMSGASGMVYMEYNTGRSKHPGQ 747
Query: 268 GQAKNKPKDPAKRHHLFRKRF 206
GQ K+KPKDP+KRH LF+KRF
Sbjct: 748 GQIKSKPKDPSKRHFLFKKRF 768
>ref|XP_018623264.1| PREDICTED: DNA repair helicase XPB1 [Nicotiana tomentosiformis]
ref|XP_009589972.2| PREDICTED: DNA repair helicase XPB1 [Nicotiana tomentosiformis]
Length = 511
Score = 97.8 bits (242), Expect = 7e-21
Identities = 51/78 (65%), Positives = 55/78 (70%)
Frame = -3
Query: 439 LSKVLSAGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQA 260
L KVL+AGDD VGLEQL+EDADDIALQK MVYMEYNTGKK G
Sbjct: 433 LGKVLNAGDDAVGLEQLDEDADDIALQKARRYVGSMSAMSGAKGMVYMEYNTGKKQGGLI 492
Query: 259 KNKPKDPAKRHHLFRKRF 206
K+KPKDPAKRH LF+KRF
Sbjct: 493 KSKPKDPAKRHQLFKKRF 510