BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00019098
         (1291 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposo...   381   e-128
gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subc...   373   e-121
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   385   e-120
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   386   e-119
gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [...   375   e-119
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]         386   e-119
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   385   e-119
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   385   e-118
emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]        385   e-118
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         385   e-118
emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]        384   e-118
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]     383   e-118
gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japo...   379   e-118
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]     385   e-118
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         383   e-118
emb|CAE01581.2| OSJNBa0068L06.7 [Oryza sativa Japonica Group]         374   e-118
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         383   e-118
gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group...   378   e-118
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-...   382   e-118
gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subc...   381   e-117

>gb|KYP73716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 304

 Score =  381 bits (978), Expect = e-128
 Identities = 184/304 (60%), Positives = 240/304 (78%)
 Frame = +3

Query: 3   LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
           LCLYVDDILIFGS++ +IND+K FLS NF+MKDLG  ++IL  K+++ ++G VL+QSHYI
Sbjct: 1   LCLYVDDILIFGSNLHVINDVKSFLSSNFEMKDLGLVDVILGIKLIKNHDGIVLTQSHYI 60

Query: 183 EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
           EKIL  F     +PVSTP+DP+  LKKN G  V   +Y+QIIGSL  L+N++RPDIAYAV
Sbjct: 61  EKILKKFNYFDVKPVSTPFDPSIKLKKNIGESVSPLKYSQIIGSLLHLSNFSRPDIAYAV 120

Query: 363 NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            RL RYT NPD SHW ALER+ RYLKGT+ YG+HY+ YP V+EG+ DANWISDS + KST
Sbjct: 121 GRLGRYTHNPDHSHWLALERLFRYLKGTVNYGIHYACYPVVIEGFCDANWISDSDETKST 180

Query: 543 TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
           +G+VF L GGAV+WKS KQT+++RS ME+E+IALDT S EAE+LK+L+ ++PL+ KP+P 
Sbjct: 181 SGYVFTLAGGAVAWKSAKQTIISRSTMEAEIIALDTASSEAEFLKNLLYDLPLLNKPIPP 240

Query: 723 ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
           IS+HCD + AI K   +N N K  RHL++RHK +R  + + +I++DF+RSE NLAD LTK
Sbjct: 241 ISMHCDSQVAIIKVTSKNFNEK-RRHLRIRHKFIRNLITHGVISVDFIRSENNLADPLTK 299

Query: 903 GLSR 914
           GL+R
Sbjct: 300 GLTR 303


>gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 591

 Score =  373 bits (957), Expect = e-121
 Identities = 178/317 (56%), Positives = 245/317 (77%)
 Frame = +3

Query: 6    CLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIE 185
            CLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG    QSHY+E
Sbjct: 274  CLYVDDILIFGTNLRVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITHLQSHYVE 333

Query: 186  KILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAVN 365
            KIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +LT+ TRPDI++AV+
Sbjct: 334  KILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLTSVTRPDISFAVS 393

Query: 366  RLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKSTT 545
            +LS +TSN    HW  LER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T+
Sbjct: 394  KLSLFTSNLGDDHWRVLERVMRYLKGTMELGLHYTGYPAVLEGYSDSNWISDVDEIKATS 453

Query: 546  GFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPAI 725
            G+V  LGGGAVSW+  KQT++ RS ME E+ ALDT +IEAEWL+DL++++P+VEKP+PAI
Sbjct: 454  GYVLTLGGGAVSWRFCKQTILTRSTMEVELTALDTATIEAEWLRDLLMDLPIVEKPVPAI 513

Query: 726  SIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTKG 905
             ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TKG
Sbjct: 514  LMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLKNSRVITLDYIQTARNLADPFTKG 573

Query: 906  LSRTVVLESSRGMGLSP 956
            LSRTV+ ++S+ MGL P
Sbjct: 574  LSRTVIDKASKEMGLRP 590


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  385 bits (989), Expect = e-120
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 777  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 836

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 837  EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 896

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 897  SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 956

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 957  SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1016

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1017 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1076

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1077 GLSRNVINNASKEMGLRP 1094


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  386 bits (992), Expect = e-119
 Identities = 183/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG++I++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNIEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>gb|AAK39592.1|AC025296_27 putative retrotransposon polyprotein [Oryza sativa Japonica Group]
          Length = 804

 Score =  375 bits (962), Expect = e-119
 Identities = 175/319 (54%), Positives = 247/319 (77%), Gaps = 1/319 (0%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYV-LSQSHY 179
            LCLYVDDILIFG+ + +I ++K +LS++F+MKDLGEA++ILN K+ R + G + L QSHY
Sbjct: 485  LCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHY 544

Query: 180  IEKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYA 359
            ++K+L  F    C+P  TPYDPN  L+KN      Q  Y+QIIGSL +L + TRPDI++A
Sbjct: 545  VDKVLSRFGYSDCKPAPTPYDPNVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFA 604

Query: 360  VNRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKS 539
            V++LSR+ SNP   HW ALER++RYLKGT++YG+HY+GYP VLEGYSD+NWISD+ ++K+
Sbjct: 605  VSKLSRFVSNPGDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDANEIKA 664

Query: 540  TTGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLP 719
             +G+ F LGGGAVSWKS KQT++ RS ME+E+ ALDT ++EAEWL++L++++P+VEKP+P
Sbjct: 665  ISGYAFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVP 724

Query: 720  AISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLT 899
            AI ++CD ++ I K +    N+K +RH+K R KS+R +  + +IALD+V++ +NLAD  T
Sbjct: 725  AILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSGVIALDYVQTARNLADQFT 784

Query: 900  KGLSRTVVLESSRGMGLSP 956
            KGL R V+  +SR MGL P
Sbjct: 785  KGLPRNVIDSASREMGLIP 803


>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
          Length = 1342

 Score =  386 bits (992), Expect = e-119
 Identities = 184/320 (57%), Positives = 251/320 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNNRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALERI+RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERIMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSPQE 962
            GLSR V+  +S+ MGL P E
Sbjct: 1284 GLSRNVIDNASKEMGLRPIE 1303


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  385 bits (990), Expect = e-119
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  385 bits (988), Expect = e-118
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>emb|CAE01299.2| OSJNBa0020P07.16 [Oryza sativa Japonica Group]
          Length = 1314

 Score =  385 bits (988), Expect = e-118
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 956  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1015

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1016 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1075

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1076 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1135

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1136 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1195

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1196 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1255

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1256 GLSRNVIDNASKEMGLRP 1273


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  385 bits (988), Expect = e-118
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
          Length = 1264

 Score =  384 bits (985), Expect = e-118
 Identities = 181/318 (56%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 946  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADIILNIKLIRGENGITLLQSHYV 1005

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1006 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1065

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  G+HY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1066 SKLSRFTSNPGDDHWRALERVMRYLKGTVGLGVHYTGYPAVLEGYSDSNWISDVDEIKAT 1125

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1126 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1185

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1186 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1245

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1246 GLSRNVIDNASKEMGLRP 1263


>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1229

 Score =  383 bits (983), Expect = e-118
 Identities = 181/318 (56%), Positives = 249/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FL QNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 911  LCLYVDDILIFGTNLEVINEVKSFLPQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 970

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 971  EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1030

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1031 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1090

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1091 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1150

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1151 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1210

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1211 GLSRNVIDNASKEMGLRP 1228


>gb|EEE67150.1| hypothetical protein OsJ_24213 [Oryza sativa Japonica Group]
          Length = 1028

 Score =  379 bits (972), Expect = e-118
 Identities = 176/319 (55%), Positives = 250/319 (78%), Gaps = 1/319 (0%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYV-LSQSHY 179
            LCLYVDDILIFG+ + +I ++K +LS++F+MKDLGEA++ILN K+ R + G + L QSHY
Sbjct: 709  LCLYVDDILIFGTSLNVIEEVKDYLSKSFEMKDLGEADVILNIKLQRGDEGGITLVQSHY 768

Query: 180  IEKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYA 359
            ++K+L  F    C+P  TPYDP+  L+KN      Q  Y+QIIGSL +L + TRPDI++A
Sbjct: 769  VDKVLSRFGYSDCKPAPTPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFA 828

Query: 360  VNRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKS 539
            V++LSR+ SNP+  HW ALER++RYLKGT++YG+HY+GYP VLEGYSD+NWISD+ ++K+
Sbjct: 829  VSKLSRFVSNPEDDHWQALERVMRYLKGTMSYGIHYTGYPKVLEGYSDSNWISDADEIKA 888

Query: 540  TTGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLP 719
            T+G+VF LGGGAVSWKS KQT++ RS ME+E+ ALDT ++EAEWL++L++++P+VEKP+P
Sbjct: 889  TSGYVFTLGGGAVSWKSCKQTILTRSTMEAELTALDTATVEAEWLRELLMDLPVVEKPVP 948

Query: 720  AISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLT 899
            AI ++CD ++ I K +    N+K +RH+K R KS+R +  + +IALD+V++ +NLAD  T
Sbjct: 949  AILMNCDNQTVIIKVNSSKDNMKSSRHIKRRLKSVRKQKNSEVIALDYVQTARNLADQFT 1008

Query: 900  KGLSRTVVLESSRGMGLSP 956
            KGL R V+  +SR MGL P
Sbjct: 1009 KGLPRNVIDSASREMGLIP 1027


>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1391

 Score =  385 bits (988), Expect = e-118
 Identities = 182/318 (57%), Positives = 250/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 1073 LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1132

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1133 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1192

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1193 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1252

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1253 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1312

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1313 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1372

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1373 GLSRNVIDNASKEMGLRP 1390


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  383 bits (984), Expect = e-118
 Identities = 181/318 (56%), Positives = 249/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  G HY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>emb|CAE01581.2| OSJNBa0068L06.7 [Oryza sativa Japonica Group]
          Length = 873

 Score =  374 bits (960), Expect = e-118
 Identities = 178/318 (55%), Positives = 248/318 (77%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFD KDLG A++ILN +++R  NG  L QSHY+
Sbjct: 555  LCLYVDDILIFGTNLEVINEVKSFLSQNFDTKDLGVADVILNIELIRGENGITLLQSHYV 614

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL++F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 615  EKILNHFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 674

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLK T+  GLHY+GY +VLEGYSD+NWISD  ++K+T
Sbjct: 675  SKLSRFTSNPGDDHWRALERVMRYLKVTMELGLHYTGYHAVLEGYSDSNWISDVDEIKAT 734

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S+KQT++ RS ME+E+ ALDT ++EAEW++DL++++P+VEKP+PA
Sbjct: 735  SGYVFTLGGGAVSWRSSKQTILTRSTMEAELTALDTATVEAEWMRDLLMDLPIVEKPVPA 794

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R      +I LD++++ KNLAD  TK
Sbjct: 795  ILMNCDNQTVIVKVNSYKDNMKSSRHVKRRLKSVRKLRNFGVITLDYIQTAKNLADPFTK 854

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 855  GLSRNVIDNASKEMGLRP 872


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  383 bits (984), Expect = e-118
 Identities = 181/318 (56%), Positives = 249/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW  LER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRVLERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAV44157.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1046

 Score =  378 bits (970), Expect = e-118
 Identities = 177/317 (55%), Positives = 247/317 (77%)
 Frame = +3

Query: 6    CLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYIE 185
            CLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+E
Sbjct: 729  CLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNMKLIRSENGITLLQSHYVE 788

Query: 186  KILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAVN 365
            KIL+ F     +P  TPYDP+  L+KN      Q +Y+QIIGSL +L + TRPDI++A++
Sbjct: 789  KILNRFGYIDNKPSPTPYDPSLLLRKNKRIARNQLQYSQIIGSLMYLASATRPDISFAMS 848

Query: 366  RLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKSTT 545
            +LSR+TSNP   HW ALER++RYLKGT+  G HYSGYP+VLEGYSD+NWISD  ++K+T+
Sbjct: 849  KLSRFTSNPGDDHWRALERVMRYLKGTMELGFHYSGYPTVLEGYSDSNWISDMDEIKATS 908

Query: 546  GFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPAI 725
            G+VF LGGGAVSW+S  QT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PAI
Sbjct: 909  GYVFTLGGGAVSWRSCNQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAI 968

Query: 726  SIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTKG 905
             ++CD ++ I K +    N+K +RH+K + KS+R    + +I LD++++ +NLAD  TKG
Sbjct: 969  LMNCDNQTVILKVNSSKDNMKSSRHVKRQVKSVRKLRNSGVITLDYIQTARNLADPFTKG 1028

Query: 906  LSRTVVLESSRGMGLSP 956
            LSR V+  +S+ MGL P
Sbjct: 1029 LSRNVIDNASKEMGLRP 1045


>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  382 bits (982), Expect = e-118
 Identities = 181/318 (56%), Positives = 249/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++++IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 984  LCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYV 1043

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 1044 EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1103

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEGYSD+NWISD  ++K+T
Sbjct: 1104 SKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKAT 1163

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL++++P+VEKP+PA
Sbjct: 1164 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPA 1223

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  T 
Sbjct: 1224 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTM 1283

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1284 GLSRNVIDNASKEMGLRP 1301


>gb|ABA98797.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1243

 Score =  381 bits (978), Expect = e-117
 Identities = 182/318 (57%), Positives = 249/318 (78%)
 Frame = +3

Query: 3    LCLYVDDILIFGSDIQIINDIKHFLSQNFDMKDLGEAELILNTKILRKNNGYVLSQSHYI 182
            LCLYVDDILIFG+++Q+IN++K FLSQNFDMKDLG A++ILN K++R  NG  L QSHY+
Sbjct: 925  LCLYVDDILIFGTNLQVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGINLLQSHYV 984

Query: 183  EKILDNFYSPYCQPVSTPYDPNTHLKKNTGHPVLQREYAQIIGSLGFLTNYTRPDIAYAV 362
            EKIL+ F     +P  TPYDP+  L+KN      Q EY+QIIGSL +L + TRPDI++AV
Sbjct: 985  EKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAV 1044

Query: 363  NRLSRYTSNPDQSHWTALERILRYLKGTLTYGLHYSGYPSVLEGYSDANWISDSVDVKST 542
            ++LSR+TSNP   HW ALER++RYLKGT+  GLHY+GYP+VLEG+SD+NWISD  ++K+T
Sbjct: 1045 SKLSRFTSNPGDDHWRALERVIRYLKGTVELGLHYTGYPAVLEGHSDSNWISDVDEIKAT 1104

Query: 543  TGFVFLLGGGAVSWKSTKQTVMARSIMESEMIALDTTSIEAEWLKDLMIEIPLVEKPLPA 722
            +G+VF LGGGAVSW+S KQT++ RS ME+E+ ALDT ++EAEWL+DL+++ P+VEKP+PA
Sbjct: 1105 SGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWLRDLLMDQPVVEKPVPA 1164

Query: 723  ISIHCDCRSAIDKCHQENANVKMNRHLKVRHKSLRYKMKNHIIALDFVRSEKNLADHLTK 902
            I ++CD ++ I K +    N+K +RH+K R KS+R    + +I LD++++ +NLAD  TK
Sbjct: 1165 ILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTK 1224

Query: 903  GLSRTVVLESSRGMGLSP 956
            GLSR V+  +S+ MGL P
Sbjct: 1225 GLSRNVIDNASKEMGLRP 1242