BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00016988
         (2469 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   142   8e-31
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   139   4e-30
emb|CDP17738.1| unnamed protein product [Coffea canephora]            137   2e-29
emb|CDP17739.1| unnamed protein product [Coffea canephora]            130   2e-28
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo...   117   6e-27
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   110   2e-26
gb|KYP59920.1| Retrovirus-related Pol polyprotein from transposo...   119   3e-26
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              115   3e-25
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   124   3e-25
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   115   5e-25
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   115   5e-25
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   110   6e-25
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            110   7e-25
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     109   8e-25
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo...   114   1e-24
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo...   114   1e-24
gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposo...   114   1e-24
gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna ...   116   1e-24
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              112   2e-24
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              111   3e-24

>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  142 bits (357), Expect = 8e-31
 Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 4/159 (2%)
 Frame = -3

Query: 1759 HNYFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDP 1589
            ++Y+V+FVD++SR  WV  MK +++   +F+KWKK +E QTGR+++     +GGE + DP
Sbjct: 284  NHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGGEYTSDP 343

Query: 1588 VRELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYV 1412
             ++ C +  + R ++ +     Q + VAE + R L+ KVR M+S++G  K  W EA+ Y 
Sbjct: 344  FKKACEESGIVRHFTVKHTP--QQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYA 401

Query: 1411 CHIINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
             H+INRLPSSAI GK PLE   GKPA+DY SL VFGC A
Sbjct: 402  SHLINRLPSSAIGGKTPLEKWFGKPATDYDSLHVFGCTA 440


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  139 bits (350), Expect = 4e-30
 Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 4/155 (2%)
 Frame = -3

Query: 1756 NYFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPV 1586
            +YFV+FVD++SR  WV TMK++N   E+F+KWK  +E  TGR+++ L   +GGE   DP 
Sbjct: 436  HYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPF 495

Query: 1585 RELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVC 1409
              +C    + R ++ +  K  Q + V+E + + LV KV  M+S++   +  W EA+TY  
Sbjct: 496  LNVCQDCGIVRHFTVR--KTPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQ 553

Query: 1408 HIINRLPSSAIEGKIPLEILSGKPASDYGSLRVFG 1304
            H++NRLPSSAI+GK PLE+ SGKPA+DY SL VFG
Sbjct: 554  HLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFG 588


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  137 bits (344), Expect = 2e-29
 Identities = 71/157 (45%), Positives = 107/157 (68%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFV+F+D++SR  WV TMK +++  ++F+KWK  +E QTGR+++ L   +GGE   DP +
Sbjct: 523  YFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQ 582

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
            ++C +  + R +  +  K  Q + V+E + + LV KVR M+S++G  +  W EA+TY  H
Sbjct: 583  KICQECGIVRHFIVR--KIPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVTYAQH 640

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            ++NRLPSSAI GK PLE+ SGK A+DY SLR+F   A
Sbjct: 641  LVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTA 677


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score =  130 bits (326), Expect = 2e-28
 Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 4/153 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFV+F+D++SR  WV TMK +++  E+F+KWK  +E QTGR+++ L   +GGE   DP +
Sbjct: 131  YFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQ 190

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
            ++  +  + + ++ +  K  Q + V+E + + LV KV  M+S++   +  W E +TY  H
Sbjct: 191  KIGQECGIVQHFTVR--KTPQQNGVSERMNKTLVEKVHCMLSNARLGRKFWAETVTYAQH 248

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVF 1307
            ++NRLPSSAI GK PLE+ SGKP +DY SLR+F
Sbjct: 249  LVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIF 281


>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 507

 Score =  117 bits (292), Expect(2) = 6e-27
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YF+S +D+YSR TW+   KH+NQA + F +WK ++E QT +RV+ L   +G E       
Sbjct: 124  YFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQTSKRVKRLRTDNGLEFCSKEFN 183

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGR-ILVKVRYMMSSSGADKTLWTEALTYVCH 1406
            + C  + + R Y+ +     Q + VAE + R +L + R ++S++G  ++ W EA++  C+
Sbjct: 184  DYCKAEGIARQYTVRNTP--QQNGVAERMNRTLLERARCLLSNAGLSRSFWAEAVSTTCY 241

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            +INR PS+ I+ K P+E+ S KPA +Y  LRVFGC A
Sbjct: 242  LINRSPSTIIDCKTPIEVWSNKPA-NYSLLRVFGCNA 277



 Score = 35.4 bits (80), Expect(2) = 6e-27
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVFDEASV*KHSSSVQEESGQTGMISRQVE 1102
            V GY+ W+P  R++ILSR+V  + S   + S     SG+   I +QVE
Sbjct: 302  VKGYRIWSPAERKVILSRDVIFDESHLFYPSLEFTVSGKNQKILKQVE 349


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  110 bits (275), Expect(2) = 2e-26
 Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            +FVS +D+YSR TWV  MKH+++A + F +WK ++E QTG++++ L   +G E       
Sbjct: 491  FFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFD 550

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGR-ILVKVRYMMSSSGADKTLWTEALTYVCH 1406
            + C  + + R  + +     Q + VAE + + +L + R M+S++G D+  W EA++  C+
Sbjct: 551  QFCKDEGIARHRTVRNTP--QQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACY 608

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            +INR P + I+ K P+E+ SGK A+DY +L+ FGC A
Sbjct: 609  LINRGPHTGIQCKTPMEMWSGK-AADYSNLKAFGCTA 644



 Score = 40.4 bits (93), Expect(2) = 2e-26
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V G++ W+P  +R+I+SRNV  + S    +      + +TG + +QVE  V    SD
Sbjct: 669  VKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESD 725


>gb|KYP59920.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 259

 Score =  119 bits (298), Expect = 3e-26
 Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 4/155 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YF+S +D+YSR TW+  MKH+NQA + F +WK ++E QTG+R++ L   +G E       
Sbjct: 76   YFLSIIDDYSRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFN 135

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGR-ILVKVRYMMSSSGADKTLWTEALTYVCH 1406
            + C K+ + R Y+ +     Q + VAE + R +L K RY++S++G  K+ W EA+   C+
Sbjct: 136  DYCKKEGIVRQYTVRNTP--QQNGVAERMNRTLLEKRRYLLSNAGLTKSFWAEAVNTACY 193

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGC 1301
            ++N  PS+ I  K P E+ S KPA +Y  LR+FGC
Sbjct: 194  LVNGSPSTIIGCKTPTEVWSTKPA-NYSILRIFGC 227


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  115 bits (289), Expect(2) = 3e-25
 Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 4/180 (2%)
 Frame = -3

Query: 1798 VFASRDLLESGS*HNYFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVRE 1619
            V+ S +L   G+   YFVSF+D+YSR  WV  +K ++    VF  +K  IEL+TG++++ 
Sbjct: 489  VWESPELSLGGA--RYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKC 546

Query: 1618 L---HGGEPSDDPVRELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSG 1451
            L   +GGE  D      C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G
Sbjct: 547  LRTDNGGEYVDGEFLAFCKQEGIVRQFTV--AHTPQQNGVAERMNRTLLERTRAMLKTAG 604

Query: 1450 ADKTLWTEALTYVCHIINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
              K+ W EA+   C++INR PS+AI+ K P+E+  GKP  DY SL VFGCP      S+E
Sbjct: 605  MAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQE 663



 Score = 30.8 bits (68), Expect(2) = 3e-25
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVF---DEASV*KHSSSVQEESGQTGMISRQVEIDVS 1090
            V GY+ W+P +R++++SR+V    +E    + + S  +E+    M  +  E D S
Sbjct: 683  VKGYRLWDPTARKVVVSRDVVFAENELQSKQKNDSTSKETAIVQMEEKSKESDSS 737


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  124 bits (310), Expect = 3e-25
 Identities = 65/138 (47%), Positives = 94/138 (68%), Gaps = 4/138 (2%)
 Frame = -3

Query: 1705 TMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVRELCLKQSVHRCYSSQG 1535
            TMK++N   E+F+KWK  +E QTGR+++ L   +GGE   DP  ++C    + R ++ + 
Sbjct: 507  TMKNKNDVLEIFLKWKDEVENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIR- 565

Query: 1534 AKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCHIINRLPSSAIEGKIPL 1358
             K  Q + V+E + +ILV KVR M+S++   +  W EA+TY  H++NRLPSSAI+GK PL
Sbjct: 566  -KTPQQNGVSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPL 624

Query: 1357 EILSGKPASDYGSLRVFG 1304
            E+ SGKPA+DY SL VFG
Sbjct: 625  EVWSGKPATDYDSLHVFG 642


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  115 bits (289), Expect(2) = 5e-25
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL TG+R++ L   +GGE  D    
Sbjct: 501  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 560

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 561  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACY 618

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+ SGKP S+Y SL VFGCP      S+E
Sbjct: 619  LINRSPSTAIGLKTPMEMWSGKP-SNYSSLHVFGCPVYVMYNSQE 662



 Score = 30.0 bits (66), Expect(2) = 5e-25
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRN-VFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GY+ W+P +R++++SR+ VF E  + K     ++E+  T   +  VEI    +  D
Sbjct: 682  VKGYRLWDPTARKVVVSRDVVFAETELQK-----EQENDSTIKDTSIVEIGGKSKKDD 734


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  115 bits (289), Expect(2) = 5e-25
 Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL TG+R++ L   +GGE  D    
Sbjct: 452  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 512  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACY 569

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+ SGKP S+Y SL VFGCP      S+E
Sbjct: 570  LINRSPSTAIGLKTPMEMWSGKP-SNYSSLHVFGCPVYVMYNSQE 613



 Score = 30.0 bits (66), Expect(2) = 5e-25
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRN-VFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GY+ W+P +R++++SR+ VF E  + K     ++E+  T   +  VEI    +  D
Sbjct: 633  VKGYRLWDPTARKVVVSRDVVFAETELQK-----EQENDSTIKDTSIVEIGGKSKKDD 685


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  110 bits (275), Expect(2) = 6e-25
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            Y ++ VD+YSR  W   +KH+ QA +VF +WK ++E QT R+V+ L   +G E      +
Sbjct: 720  YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 779

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C  + + R Y+       Q + VAE + R ++ K R ++S++G  K  W EA++  C+
Sbjct: 780  SYCKSEGIVRHYTVPHTP--QQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACY 837

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            +INR PS AI+ K P+E+ SG PA +Y  LRVFGC A
Sbjct: 838  LINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 873



 Score = 35.0 bits (79), Expect(2) = 6e-25
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVFDEASV*KH---SSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GYK W P+++++++SRNV    SV  H   S++V  ES +   +  QVE  +S  ++ 
Sbjct: 898  VKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVEHLISSGHA- 954

Query: 1074 XXXXXXXXXXXTQQGRTAVGKDT*IIQNQGQGQVRSSTAVWKPKESV 934
                        ++   A+ +D  +I++     V+ S     PK S+
Sbjct: 955  -----------PEKEDVAINQDEPVIEDSNSSIVQQS-----PKRSI 985


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  110 bits (275), Expect(2) = 7e-25
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            Y ++ VD+YSR  W   +KH+ QA +VF +WK ++E QT R+V+ L   +G E      +
Sbjct: 513  YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 572

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C  + + R Y+       Q + VAE + R ++ K R ++S++G  K  W EA++  C+
Sbjct: 573  SYCKSEGIVRHYTVPHTP--QQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACY 630

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            +INR PS AI+ K P+E+ SG PA +Y  LRVFGC A
Sbjct: 631  LINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 666



 Score = 35.0 bits (79), Expect(2) = 7e-25
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVFDEASV*KH---SSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GYK W P+++++++SRNV    SV  H   S++V  ES +   +  QVE  +S  ++ 
Sbjct: 691  VKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVEHLISSGHA- 747

Query: 1074 XXXXXXXXXXXTQQGRTAVGKDT*IIQNQGQGQVRSSTAVWKPKESV 934
                        ++   A+ +D  +I++     V+ S     PK S+
Sbjct: 748  -----------PEKEDVAINQDEPVIEDSNSSIVQQS-----PKRSI 778


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  109 bits (273), Expect(2) = 8e-25
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            Y ++ VD+YSR  W   +KH+ QA +VF +WK ++E QT R+V+ L   +G E      +
Sbjct: 422  YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFK 481

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C  + + R Y+       Q + VAE + R ++ K R M+S++   K  W EA++  C+
Sbjct: 482  SYCKSEGIVRHYTVPHTP--QQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACY 539

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPA 1295
            +INR PS AI+ K P+E+ SG PA +Y  LRVFGC A
Sbjct: 540  LINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 575



 Score = 35.4 bits (80), Expect(2) = 8e-25
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVFDEASV*KH---SSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GYK W P+++++++SRNV    S+  H   S++V  ES +   +S QVE  +S  ++ 
Sbjct: 600  VKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQE--KVSVQVEHLISSGHA- 656

Query: 1074 XXXXXXXXXXXTQQGRTAVGKDT*IIQNQGQGQVRSSTAVWKPKESV 934
                        ++   A+ +D  +I++     V+ S     PK S+
Sbjct: 657  -----------PEKEDVAINQDAPVIEDSDSSIVQQS-----PKRSI 687


>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  114 bits (286), Expect(2) = 1e-24
 Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL TG+R++ L   +GGE  D    
Sbjct: 501  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 560

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 561  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACY 618

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+ +GKP S+Y SL VFGCP      S+E
Sbjct: 619  LINRSPSTAIGLKTPMEMWNGKP-SNYSSLHVFGCPVYVMYNSQE 662



 Score = 30.0 bits (66), Expect(2) = 1e-24
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRN-VFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GY+ W+P +R++++SR+ VF E  + K     ++E+  T   +  VEI    +  D
Sbjct: 682  VKGYRLWDPTARKVVVSRDVVFAETELQK-----EQENDSTIKDTSIVEIGGKSKKDD 734


>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  114 bits (286), Expect(2) = 1e-24
 Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL TG+R++ L   +GGE  D    
Sbjct: 452  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 512  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACY 569

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+ +GKP S+Y SL VFGCP      S+E
Sbjct: 570  LINRSPSTAIGLKTPMEMWNGKP-SNYSSLHVFGCPVYVMYNSQE 613



 Score = 30.0 bits (66), Expect(2) = 1e-24
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRN-VFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GY+ W+P +R++++SR+ VF E  + K     ++E+  T   +  VEI    +  D
Sbjct: 633  VKGYRLWDPTARKVVVSRDVVFAETELQK-----EQENDSTIKDTSIVEIGGKSKKDD 685


>gb|KYP38095.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  114 bits (286), Expect(2) = 1e-24
 Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL TG+R++ L   +GGE  D    
Sbjct: 452  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGEYIDGDFL 511

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 512  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVKTACY 569

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+ +GKP S+Y SL VFGCP      S+E
Sbjct: 570  LINRSPSTAIGLKTPMEMWNGKP-SNYSSLHVFGCPVYVMYNSQE 613



 Score = 30.0 bits (66), Expect(2) = 1e-24
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRN-VFDEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNSD 1075
            V GY+ W+P +R++++SR+ VF E  + K     ++E+  T   +  VEI    +  D
Sbjct: 633  VKGYRLWDPTARKVVVSRDVVFAETELQK-----EQENDSTIKDTSIVEIGGKSKEDD 685


>gb|KOM25686.1| hypothetical protein LR48_Vigan153s000800 [Vigna angularis]
          Length = 473

 Score =  116 bits (291), Expect(2) = 1e-24
 Identities = 66/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF ++K  +EL+TG+ ++ L   +GGE +D    
Sbjct: 114  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELETGKMIKCLRTDNGGEYTDGDFL 173

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 174  AFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLKTTGLAKSFWAEAVKTACY 231

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI  K P+E+  GKPA DY SL VFGCP      S+E
Sbjct: 232  LINRSPSTAIGVKTPMEMWKGKPA-DYSSLHVFGCPVYVMYNSQE 275



 Score = 28.1 bits (61), Expect(2) = 1e-24
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNV 1186
            V GY+ W+P + +II+SR+V
Sbjct: 295  VKGYRLWDPTAHKIIVSRDV 314


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  112 bits (280), Expect(2) = 2e-24
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 4/165 (2%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF  +K  IEL+T ++++ L   +GGE  D    
Sbjct: 502  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFL 561

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA+   C+
Sbjct: 562  AFCKQEGIVRQFTV--AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACY 619

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCPAQEKTGSKE 1271
            +INR PS+AI+ K P+E+  GKP  DY SL VFGCP      S+E
Sbjct: 620  VINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQE 663



 Score = 31.6 bits (70), Expect(2) = 2e-24
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVF---DEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNS 1078
            V GY+ W+P +R++++SR+V    +E    + + S  +E+    M  +  E D S   S
Sbjct: 683  VKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKETAIVQMEEKSKESDSSEAES 741


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  111 bits (278), Expect(2) = 3e-24
 Identities = 67/167 (40%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
 Frame = -3

Query: 1753 YFVSFVDEYSRFTWVATMKHRNQAREVFIKWKKVIELQTGRRVREL---HGGEPSDDPVR 1583
            YFVSF+D+YSR  WV  +K ++    VF  +K  IEL+T ++++ L   +GGE  D    
Sbjct: 502  YFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFL 561

Query: 1582 ELCLKQSVHRCYSSQGAKGMQLDDVAESIGRILV-KVRYMMSSSGADKTLWTEALTYVCH 1406
              C ++ + R ++   A   Q + VAE + R L+ + R M+ ++G  K+ W EA    C+
Sbjct: 562  AFCKQEGIVRQFTV--AHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACY 619

Query: 1405 IINRLPSSAIEGKIPLEILSGKPASDYGSLRVFGCP------AQEKT 1283
            +INR PS+AI+ K P+E+  GKP  DY SL VFGCP      +QEKT
Sbjct: 620  VINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYNSQEKT 665



 Score = 31.6 bits (70), Expect(2) = 3e-24
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -1

Query: 1245 VLGYKFWNPKSRRIILSRNVF---DEASV*KHSSSVQEESGQTGMISRQVEIDVSPRNS 1078
            V GY+ W+P +R++++SR+V    +E    + + S  +E+    M  +  E D S   S
Sbjct: 683  VKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKETAIVQMEEKSKESDSSEAES 741