BLASTX nr result
ID: Ophiopogon27_contig00016094
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00016094
(4966 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [As... 2023 0.0
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su... 1644 0.0
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su... 1638 0.0
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su... 1600 0.0
gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagu... 1568 0.0
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su... 1464 0.0
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su... 1449 0.0
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso... 1431 0.0
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ... 1356 0.0
ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 iso... 1344 0.0
ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 iso... 1330 0.0
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 1266 0.0
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 1262 0.0
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 1256 0.0
ref|XP_019055892.1| PREDICTED: DNA-directed RNA polymerase IV su... 1253 0.0
ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1253 0.0
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV su... 1253 0.0
ref|XP_020165521.1| DNA-directed RNA polymerase IV subunit 1 iso... 1252 0.0
ref|XP_020165520.1| DNA-directed RNA polymerase IV subunit 1 iso... 1252 0.0
ref|XP_015696685.1| PREDICTED: DNA-directed RNA polymerase IV su... 1251 0.0
>ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [Asparagus officinalis]
Length = 1529
Score = 2023 bits (5240), Expect = 0.0
Identities = 1029/1552 (66%), Positives = 1215/1552 (78%), Gaps = 20/1552 (1%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
M D +++MVPSAQLLG+KFDL+TG DIEKFS VN+ND+SDL S KLG+PNA S+CTTC
Sbjct: 1 MEKDLNSERMVPSAQLLGIKFDLMTGPDIEKFSQVNVNDSSDLNSVKLGLPNASSECTTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS 499
GST+ DCEGHFGVIKLP IYHPYL+ E+VHILNQICP CKS I +
Sbjct: 61 GSTNTKDCEGHFGVIKLPATIYHPYLVNEVVHILNQICPGCKSIKKQTRKDMQIKKKIET 120
Query: 500 IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 679
++RLLLKMKFEK+ MPQ QNLLS+VA VKHLKFSGS KKW +V+NQA CK+CS+NS+
Sbjct: 121 LQRLLLKMKFEKLKMPQNQNLLSKVAK--VKHLKFSGSNKKWASVENQASCKYCSKNSQN 178
Query: 680 --WYPAIKFKTL------------SRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKD 811
WYPAIKF+TL D+ GKKCVAI AE N VP++F N SLSEVLPKD
Sbjct: 179 KYWYPAIKFETLLTDSKGKIVSKGKTDSKGKKCVAIVAEINERVPRQFRNKSLSEVLPKD 238
Query: 812 FWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVS 991
FW+F+PM+ QH SESMD N+I LSP Q FYLL+E+ KEFIE+FV RRELIFLS +PV+
Sbjct: 239 FWDFMPMVSYQHNKSESMDVNKIILSPAQVFYLLKEISKEFIEKFVSRRELIFLSYVPVA 298
Query: 992 PNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVH 1171
PNCQ VVET DK TK YR VVDAS+ I+E+H+HQQFGF AA+ IASRVH
Sbjct: 299 PNCQHVVETXXXXXXNV----DKCTKVYRSVVDASRNINEYHQHQQFGFRAAAYIASRVH 354
Query: 1172 DCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKI 1351
DCLN+SKLH+N S + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK+
Sbjct: 355 DCLNISKLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKM 413
Query: 1352 QLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQL 1531
+ GEIGLPRD+ LYI+EHVN HNV+KLK C LH+ SK EL ARR+ KLI IH+S QL
Sbjct: 414 KTGEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQL 473
Query: 1532 QVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGD 1711
QVGDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+ VSINPLCCAPLLGDFDGD
Sbjct: 474 QVGDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGD 533
Query: 1712 CLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFE 1891
CLHGFVPQS+ ARV FN Q G+SLLSLTHDSLTAAHLLME E+F +K E
Sbjct: 534 CLHGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKRE 593
Query: 1892 MQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVP 2071
MQQL ML P +FP +IKAP ++MP+WTG QLFSM+LP++M+F+ SS E+ GDLVP
Sbjct: 594 MQQLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVP 653
Query: 2072 SPGV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2239
GV S SS+ IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL
Sbjct: 654 PSGVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYL 713
Query: 2240 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2419
S+ YTR KLI+EVS ALEEAK S F+ELMLEP +G ++K HDE++DLSHT+++SN R
Sbjct: 714 ASNAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR 773
Query: 2420 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXX 2599
RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K
Sbjct: 774 -TRPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQL 832
Query: 2600 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2779
S K LPF+IPL+LSC WN+HKAF+RS+ +D S+ S GENSYAVIEASFLDGL+PLECF
Sbjct: 833 STKTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECF 892
Query: 2780 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 2959
HAL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS
Sbjct: 893 FHALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS 952
Query: 2960 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 3139
+S FSI EDS +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVL
Sbjct: 953 ----RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVL 1004
Query: 3140 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 3319
EC P +TS RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D
Sbjct: 1005 ECVPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDI 1064
Query: 3320 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCV 3499
K TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREG+ LPRLFMT Q+C+
Sbjct: 1065 KETKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQNCL 1124
Query: 3500 LGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVD 3679
L N KN EE CI V A +D SPT+LD IRD+V+PVLLQTLIKGF EFKQVD
Sbjct: 1125 LDN-AKNFEESCILVTA--------EDYNSPTILDIIRDTVIPVLLQTLIKGFTEFKQVD 1175
Query: 3680 ILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVF 3859
ILWDS KPDG+L +K+ M +SC R FW LQ+AC+PIMD+IDW RS PDGV+DIS+ F
Sbjct: 1176 ILWDSHSKPDGELIVKVTMAKSCALRNFWHALQNACIPIMDLIDWGRSHPDGVYDISNAF 1235
Query: 3860 GIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSIS 4039
GI+S+Y+YFL SLKS +SDIGRNIHLEHLLLVSDSLSVTGEFHGL+AK +KQQ+AHLSIS
Sbjct: 1236 GIVSAYNYFLRSLKSTISDIGRNIHLEHLLLVSDSLSVTGEFHGLTAKALKQQKAHLSIS 1295
Query: 4040 SPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPK 4219
+PFT+ACFSNPEK FI+AAK D+L GTVDAVAWGQEAPVGTGG FK++YSGK H PK
Sbjct: 1296 APFTEACFSNPEKSFIDAAKQGLADNLQGTVDAVAWGQEAPVGTGGSFKLMYSGKAHIPK 1355
Query: 4220 ETENIYEILLKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQ 4399
++N+YE LL K D Q P ADKW + V + GSM+ W+ N T++K+ V SS+
Sbjct: 1356 PSDNVYETLLSLKSDKPWQTPNADKW-WRGAVSNISGSMKTWDGFNFTSEKKTMVRSSSK 1414
Query: 4400 PASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXX 4579
S+ IGSW +I AM S+L R+LHQY ++H LNE DKSL++EALMYHPKKDA
Sbjct: 1415 SDSMPIGSWSSIEAMRSALRRILHQYSIDHHLNEVDKSLVIEALMYHPKKDAKIGCGIKE 1474
Query: 4580 XXXXHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
P+HP++RCFILIR+DGTTEDFSY KCV EAA Q+S EF L + +L
Sbjct: 1475 IKVGCGPYHPETRCFILIRSDGTTEDFSYHKCVNEAARQLSIEFKLTKKSDL 1526
>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Phoenix dactylifera]
ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Phoenix dactylifera]
Length = 1567
Score = 1644 bits (4258), Expect = 0.0
Identities = 858/1600 (53%), Positives = 1099/1600 (68%), Gaps = 64/1600 (4%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
MA D I + M PS L G++FD+LT +DIEK HVNI +++D+ ++KLG+PNA S+C TC
Sbjct: 1 MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXX---- 487
GS + DCEGH G+IKLP IYHPY + E++ ILNQICP C S
Sbjct: 61 GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120
Query: 488 --------------TISSIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKW 625
TI++++R LK+ K+ Q++L ++K G KKW
Sbjct: 121 KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLF-SPQSVLDHARKFYLKKSLEVG--KKW 177
Query: 626 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 799
D QA CK+C+RN+ +WYPA+KFK LS+D GKK +++ AE N +PKKF+N SL +V
Sbjct: 178 AKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDV 237
Query: 800 LPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 979
LP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++FLS
Sbjct: 238 LPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293
Query: 980 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 1159
+PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF +A S I
Sbjct: 294 LPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSFIT 353
Query: 1160 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 1339
SRV DCLNVSKL + +S GD S +GLKW+KEVVLSKRSDN FRM M+G
Sbjct: 354 SRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVG 403
Query: 1340 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHS 1519
DPKI+LG+IG+P D+S+ +YISEHVN +N+EKL SC LHL++K EL +R +G+L +
Sbjct: 404 DPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRK 463
Query: 1520 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 1699
S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGD
Sbjct: 464 SNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGD 523
Query: 1700 FDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 1879
FDGDCLHG+VPQSV RV N QDGRSL+SL+HDSLTAAHLL VF
Sbjct: 524 FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFL 583
Query: 1880 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2059
+KFEMQQ EML P +S P+IIKAP + P WTG+QLFSM+LP M+FS S+ + + G
Sbjct: 584 NKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKG 643
Query: 2060 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2239
+++ + G SF +N S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644 EVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703
Query: 2240 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2419
+SD Y+R K+ DEV + LEEA+ +CH +LML+PE+ ++K+HD T N N+AR
Sbjct: 704 SSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYAR 758
Query: 2420 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXX 2599
++ ISQ SIA F+D+F DLQ+V+ YIS +NS+ M++AGSKGSL+K
Sbjct: 759 NQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818
Query: 2600 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2779
A PLPF IP +LSC N K + + QD G+NSYAV++ASFLDGL+PLECF
Sbjct: 819 PASPLPFRIPRRLSCVSLNAQKKLEYGIP-QDVVECVRGQNSYAVVKASFLDGLNPLECF 877
Query: 2780 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 2959
VHA++ RSNMFSENAELPG LTRK+MFYMRD+ AYDGTVR+ YGQQLVQFSY P + S
Sbjct: 878 VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESS 937
Query: 2960 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 3139
E D + +D+ +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNLKKVL
Sbjct: 938 SEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNLKKVL 997
Query: 3140 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 3319
EC +R SV+++AS+ LS LK+ YGFEYGAL VKNHLDRV FSD+VT+V+IFY+ D
Sbjct: 998 ECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDV 1057
Query: 3320 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQS 3493
+GTK SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN RE G +LP L +TS+
Sbjct: 1058 QGTK---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKD 1114
Query: 3494 CVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 3673
C L + Q +E + V++ E + Q LDTIRD ++P+LL+TL+KGF EFK+
Sbjct: 1115 CSLIDIQNEHDETFCIMVLVDTPESEIQ-------LDTIRDVLVPLLLETLVKGFWEFKK 1167
Query: 3674 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISD 3853
V+IL D QP +LFL++ M E C P KFW LQ+AC+PIMD+IDWE S P+ ++DI
Sbjct: 1168 VEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFS 1227
Query: 3854 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 4033
++GI +++ YFL LKSA SD GR IH EHLL+ +D LSVTGEFHGLS KG+K+QR S
Sbjct: 1228 IYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQAS 1287
Query: 4034 ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 4213
ISSPFT AC SNP FI AAK S DHL GT+DA+AWG+EAPVGTGGPF+IIYSGKVH+
Sbjct: 1288 ISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHN 1347
Query: 4214 PKETENIYEILLKQKHDSSSQIPG----------ADKWKGQPGVDSAGGS---------- 4333
P++TENIY+ LL K + Q + KWK + + + G S
Sbjct: 1348 PQKTENIYKTLLNFKVEKPWQDDNKLCRHGDRNVSTKWKHKRILSNTGASTGESIDQLIS 1407
Query: 4334 --------------MRRWNEHN--------CTTKKEKNVVFSSQPASVRIGSWDNISAMS 4447
+ +W + ++ + + FS++ A GSW NI M
Sbjct: 1408 EEAHTRQGCPCEYPVNKWERQSKGHVVSSSVSSNSDAKMGFSTKSALRSAGSWANIVDMC 1467
Query: 4448 SSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRCFI 4627
S+L +LH+YP+N LNE DKS LMEAL YHPK+DA HSP HP SRCF+
Sbjct: 1468 SNLRTILHEYPINGYLNETDKSCLMEALSYHPKRDAKMGTGIQGIKIGHSPLHPGSRCFV 1527
Query: 4628 LIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPRQ 4747
L+RNDGTTEDFSYRKC+I AA ISPEFG MVEK++ R+
Sbjct: 1528 LVRNDGTTEDFSYRKCIIGAAYSISPEFGSMVEKKMSWRR 1567
>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Phoenix dactylifera]
Length = 1566
Score = 1638 bits (4241), Expect = 0.0
Identities = 857/1600 (53%), Positives = 1098/1600 (68%), Gaps = 64/1600 (4%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
MA D I + M PS L G++FD+LT +DIEK HVNI +++D+ ++KLG+PNA S+C TC
Sbjct: 1 MASDQIIELMAPSGLLTGIEFDILTDDDIEKICHVNIVESNDVTNAKLGLPNASSRCQTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXX---- 487
GS + DCEGH G+IKLP IYHPY + E++ ILNQICP C S
Sbjct: 61 GSKNTRDCEGHVGLIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQMKDSFDLETWE 120
Query: 488 --------------TISSIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKW 625
TI++++R LK+ K+ Q++L ++K G KKW
Sbjct: 121 KSIGEDHISEAFGKTIAALRRKFLKLCKSKVLF-SPQSVLDHARKFYLKKSLEVG--KKW 177
Query: 626 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 799
D QA CK+C+RN+ +WYPA+KFK LS+D GKK +++ AE N +PKKF+N SL +V
Sbjct: 178 AKTDAQATCKYCARNATDWYPAVKFKLLSKDMLGKKSLSVIAEVNDKLPKKFQNKSLGDV 237
Query: 800 LPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 979
LP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++FLS
Sbjct: 238 LPQDFWSFVPTFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293
Query: 980 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 1159
+PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF +A S I
Sbjct: 294 LPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLATSFIT 353
Query: 1160 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 1339
SRV DCLNVSKL + +S GD S +GLKW+KEVVLSKRSDN FRM M+G
Sbjct: 354 SRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFRMTMVG 403
Query: 1340 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHS 1519
DPKI+LG+IG+P D+S+ +YISEHVN +N+EKL SC LHL++K EL +R +G+L +
Sbjct: 404 DPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQLTSVRK 463
Query: 1520 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 1699
S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCAPLLGD
Sbjct: 464 SNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCAPLLGD 523
Query: 1700 FDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 1879
FDGDCLHG+VPQSV RV N QDGRSL+SL+HDSLTAAHLL VF
Sbjct: 524 FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTNSIVFL 583
Query: 1880 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2059
+KFEMQQ EML P +S P+IIKAP + P WTG+QLFSM+LP M+FS S+ + + G
Sbjct: 584 NKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKIPISKG 643
Query: 2060 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2239
+++ + G SF +N S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644 EVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703
Query: 2240 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2419
+SD Y+R K+ DEV + LEEA+ +CH +LML+PE+ ++K+HD T N N+AR
Sbjct: 704 SSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNPYNYAR 758
Query: 2420 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXX 2599
++ ISQ SIA F+D+F DLQ+V+ YIS +NS+ M++AGSKGSL+K
Sbjct: 759 NQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818
Query: 2600 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2779
A PLPF IP +LSC N K + + QD G+NSYAV++ASFLDGL+PLECF
Sbjct: 819 PASPLPFRIPRRLSCVSLNAQKKLEYGIP-QDVVECVRGQNSYAVVKASFLDGLNPLECF 877
Query: 2780 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 2959
VHA++ RSNMFSENAELPG LTRK+MFYMRD+ AYDGTVR+ YGQQLVQFSY P + S
Sbjct: 878 VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGESS 937
Query: 2960 CEDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVL 3139
E D + +D+ +RLGG PVGS A+C+ISEAAYGALDHP+NSLE+SPLLNLK VL
Sbjct: 938 SEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSLEASPLLNLK-VL 996
Query: 3140 ECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDA 3319
EC +R SV+++AS+ LS LK+ YGFEYGAL VKNHLDRV FSD+VT+V+IFY+ D
Sbjct: 997 ECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTVLIFYAGLDV 1056
Query: 3320 KGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQS 3493
+GTK SPW+ HFHV+KE ++RKR+ VQ+I+D L+ NYN RE G +LP L +TS+
Sbjct: 1057 QGTK---FSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTELPGLRITSKD 1113
Query: 3494 CVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 3673
C L + Q +E + V++ E + Q LDTIRD ++P+LL+TL+KGF EFK+
Sbjct: 1114 CSLIDIQNEHDETFCIMVLVDTPESEIQ-------LDTIRDVLVPLLLETLVKGFWEFKK 1166
Query: 3674 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISD 3853
V+IL D QP +LFL++ M E C P KFW LQ+AC+PIMD+IDWE S P+ ++DI
Sbjct: 1167 VEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDIFS 1226
Query: 3854 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 4033
++GI +++ YFL LKSA SD GR IH EHLL+ +D LSVTGEFHGLS KG+K+QR S
Sbjct: 1227 IYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQAS 1286
Query: 4034 ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 4213
ISSPFT AC SNP FI AAK S DHL GT+DA+AWG+EAPVGTGGPF+IIYSGKVH+
Sbjct: 1287 ISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKVHN 1346
Query: 4214 PKETENIYEILLKQKHDSSSQIPG----------ADKWKGQPGVDSAGGS---------- 4333
P++TENIY+ LL K + Q + KWK + + + G S
Sbjct: 1347 PQKTENIYKTLLNFKVEKPWQDDNKLCRHGDRNVSTKWKHKRILSNTGASTGESIDQLIS 1406
Query: 4334 --------------MRRWNEHN--------CTTKKEKNVVFSSQPASVRIGSWDNISAMS 4447
+ +W + ++ + + FS++ A GSW NI M
Sbjct: 1407 EEAHTRQGCPCEYPVNKWERQSKGHVVSSSVSSNSDAKMGFSTKSALRSAGSWANIVDMC 1466
Query: 4448 SSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRCFI 4627
S+L +LH+YP+N LNE DKS LMEAL YHPK+DA HSP HP SRCF+
Sbjct: 1467 SNLRTILHEYPINGYLNETDKSCLMEALSYHPKRDAKMGTGIQGIKIGHSPLHPGSRCFV 1526
Query: 4628 LIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPRQ 4747
L+RNDGTTEDFSYRKC+I AA ISPEFG MVEK++ R+
Sbjct: 1527 LVRNDGTTEDFSYRKCIIGAAYSISPEFGSMVEKKMSWRR 1566
>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
guineensis]
Length = 1569
Score = 1600 bits (4144), Expect = 0.0
Identities = 839/1600 (52%), Positives = 1093/1600 (68%), Gaps = 68/1600 (4%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
MA D I + M PS L G+ FD+LT +DIEK HV+I +++D+ ++KLG+PNA S+C TC
Sbjct: 1 MASDQIIELMAPSGLLTGITFDILTDDDIEKICHVSIVESNDVTNAKLGLPNASSRCQTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXX---- 487
GS + DCEGH G IKLP IYHPY + E++ ILNQICP C S
Sbjct: 61 GSRNTRDCEGHVGFIKLPRTIYHPYFVTEVIQILNQICPGCMSIKGDLQIKDSFDLETWE 120
Query: 488 --------------TISSIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKW 625
TI+++KR +LK+ K++ Q+++ V ++K+ KKW
Sbjct: 121 KFIGEDHVSEAFGKTIAAVKRKVLKLCKSKVSF-SPQSVIQHVKKVYLKNCL--EVRKKW 177
Query: 626 GTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEV 799
D QA CK+C+RN+ WYPA+KFK S+D GKK ++I AE N +PKKF+N SL +V
Sbjct: 178 AKTDAQATCKYCARNATNWYPAVKFKLFSKDMLGKKSLSIIAEVNEKLPKKFQNKSLCDV 237
Query: 800 LPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSC 979
LP+DFW+FVP Q E++ NRIT+SP QAF LL+ELD EFI+QF RR+++FLS
Sbjct: 238 LPQDFWSFVPSFSQQQESNA----NRITVSPYQAFCLLKELDPEFIKQFALRRDVLFLSY 293
Query: 980 IPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIA 1159
+PV+PNC RVVET + ++DGP+LS D+ TKAY+ +VD S+KI+EF +HQQF +A S I
Sbjct: 294 LPVAPNCHRVVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLATSFIT 353
Query: 1160 SRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIG 1339
+RV DCLNVSKL + +S GD S +GLKW+K+VVLSKRSDN FRM MIG
Sbjct: 354 NRVLDCLNVSKLRTRNSSNGDSS----------CLSGLKWLKDVVLSKRSDNAFRMTMIG 403
Query: 1340 DPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHS 1519
DPKI+LG+IG+P D+S+ L +SEHVNA+N+EKL SC LHL++ EL R +G+L +
Sbjct: 404 DPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRLTSVRK 463
Query: 1520 SDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGD 1699
S+QLQ+GDT+ R LE+GD+I+VNR PSVH HSL+ALS KILP++S VSINPLCCAPLLGD
Sbjct: 464 SNQLQIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCAPLLGD 523
Query: 1700 FDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFF 1879
FDGDCLHG+VPQSV RV N QDGRSL+SL+HDSLTAAHLL VF
Sbjct: 524 FDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTSNIVFL 583
Query: 1880 SKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNG 2059
+KFEMQQLEML + FP+IIKAP + P WTG+QLFSM+LP M+FS + +++ G
Sbjct: 584 NKFEMQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKIQISKG 643
Query: 2060 DLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYL 2239
+++ + GVS +N S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL D+YL
Sbjct: 644 EVLSTSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSLGDVYL 703
Query: 2240 TSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFAR 2419
+SD Y+R K+ DEV + LEEA+ +CH ++ML+PE+ + K+HD T N+ N+AR
Sbjct: 704 SSDLYSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFLFKSHDGT-----YRNLYNYAR 758
Query: 2420 ERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXX 2599
R+ ISQ S+A F+D+F DLQ+V+ YIS +NS+ M++AGSKGSL+K
Sbjct: 759 NRKHISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGACLGLQL 818
Query: 2600 SAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECF 2779
+ PLPF IP +LSC WN K + + QD + G+NSYAV++ASFLDGL+PLECF
Sbjct: 819 PSSPLPFRIPRRLSCVSWNAQKKSEHGI-PQDVVECAGGQNSYAVVKASFLDGLNPLECF 877
Query: 2780 VHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKS 2959
VHA++ RSNMFSENAELPG LTRK+MFYMRD+ AYDGTVR+ YGQQLVQFSY P K S
Sbjct: 878 VHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQLVQFSYNIPGKSS 937
Query: 2960 CEDCDHSHFSIGE-DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKV 3136
E+ D S + GE D+ + LGG PVGS AAC+ISEAAYGALDHP+NSLE+SPL+NLKKV
Sbjct: 938 GEEGD-SCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSLEASPLMNLKKV 996
Query: 3137 LECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHD 3316
L+C T+ S++++AS+ LS LK+ YGFEYGAL VKNHLDRV FSD+VT+++IFY+ D
Sbjct: 997 LDCGKTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLVTTILIFYAGLD 1056
Query: 3317 AKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQ 3490
+GTK SPW+ HFHV+KE ++RKR+ Q+I+D L+GNYN RE G +LP L ++S+
Sbjct: 1057 VQGTK---FSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTELPVLHISSK 1113
Query: 3491 SCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEF 3667
C L + Q +E C++V V++ + S LDTIRD ++P+LL+TLIKGF EF
Sbjct: 1114 DCSLIDIQNEHDETFCVTV-LVDAPK-------SDIQLDTIRDVIIPLLLETLIKGFWEF 1165
Query: 3668 KQVDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDI 3847
K+V+IL D Q LFL++ M E C P KFW LQ+AC+PIMD+IDWE+S P+ ++DI
Sbjct: 1166 KKVEILCDIQRDSLDGLFLRVTMSEKCLPGKFWSALQNACIPIMDLIDWEQSHPNSMYDI 1225
Query: 3848 SDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAH 4027
++GI +++ YFL LKSA SDIGR +H EHLL+ +D LSVTGEFHGLS KG+K+QR
Sbjct: 1226 FSIYGIDAAWKYFLKYLKSATSDIGRCMHEEHLLMAADCLSVTGEFHGLSTKGLKKQRDQ 1285
Query: 4028 LSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKV 4207
SISSPFT AC SNP FI AAK S DHL GT+DA+AWG+EAP+GTGGPF+IIYSGKV
Sbjct: 1286 ASISSPFTLACLSNPGNGFINAAKQGSVDHLCGTLDAMAWGKEAPIGTGGPFEIIYSGKV 1345
Query: 4208 HSPKETENIYEILLKQKHDSSSQIPG----------ADKWKGQPGVDSAGGS-------- 4333
H+ ++ ENIY+ L+ K + Q + KWK + + +A S
Sbjct: 1346 HNSQKNENIYKTLMNFKVEKPWQDDNKLCRHGDKNVSTKWKHKRILSNADASTGESIDQL 1405
Query: 4334 ----------------MRRWNE----HNCTTKKEKN------VVFSSQPASVRIGSWDNI 4435
+ +W H ++ N + F + A GSW NI
Sbjct: 1406 ISDEACMGQGCPCENPVNKWERQSKGHLVSSNAGSNSDIKTTLGFRKRSALSSAGSWANI 1465
Query: 4436 SAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKS 4615
M S+L +LH+YP+N LNE DKS LMEAL YHPK++A HSP HP S
Sbjct: 1466 VDMCSNLRTILHEYPINGYLNETDKSCLMEALSYHPKREAKMGTGVQGIKIGHSPLHPGS 1525
Query: 4616 RCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
RCF+L+RNDGTTEDFSYRKC+I AA IS E G ++EK++
Sbjct: 1526 RCFVLVRNDGTTEDFSYRKCIIGAAYNISRELGSVIEKKM 1565
>gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagus officinalis]
Length = 1445
Score = 1568 bits (4059), Expect = 0.0
Identities = 796/1190 (66%), Positives = 944/1190 (79%), Gaps = 4/1190 (0%)
Frame = +2
Query: 1178 LNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQL 1357
L+ ++LH+N S + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK++
Sbjct: 273 LSPAQLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKMKT 331
Query: 1358 GEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQV 1537
GEIGLPRD+ LYI+EHVN HNV+KLK C LH+ SK EL ARR+ KLI IH+S QLQV
Sbjct: 332 GEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQLQV 391
Query: 1538 GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 1717
GDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+ VSINPLCCAPLLGDFDGDCL
Sbjct: 392 GDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGDCL 451
Query: 1718 HGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 1897
HGFVPQS+ ARV FN Q G+SLLSLTHDSLTAAHLLME E+F +K EMQ
Sbjct: 452 HGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKREMQ 511
Query: 1898 QLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSP 2077
QL ML P +FP +IKAP ++MP+WTG QLFSM+LP++M+F+ SS E+ GDLVP
Sbjct: 512 QLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVPPS 571
Query: 2078 GV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 2245
GV S SS+ IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL S
Sbjct: 572 GVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYLAS 631
Query: 2246 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 2425
+ YTR KLI+EVS ALEEAK S F+ELMLEP +G ++K HDE++DLSHT+++SN R
Sbjct: 632 NAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR-T 690
Query: 2426 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSA 2605
RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K S
Sbjct: 691 RPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQLST 750
Query: 2606 KPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 2785
K LPF+IPL+LSC WN+HKAF+RS+ +D S+ S GENSYAVIEASFLDGL+PLECF H
Sbjct: 751 KTLPFTIPLELSCFAWNEHKAFNRSVSEKDESDFSRGENSYAVIEASFLDGLNPLECFFH 810
Query: 2786 ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 2965
AL+CR+NMFSENA++PGTLTRKIMF+MRDI VAYDGTVRN+YGQQ+VQFS+ SP +KS
Sbjct: 811 ALACRANMFSENAQVPGTLTRKIMFHMRDIYVAYDGTVRNSYGQQVVQFSHQSPYEKS-- 868
Query: 2966 DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 3145
+S FSI EDS +L G PVGSLAACSISEAAYGALD PVNSLESSPLLNLKKVLEC
Sbjct: 869 --RNSQFSI-EDS---QLSGQPVGSLAACSISEAAYGALDTPVNSLESSPLLNLKKVLEC 922
Query: 3146 APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 3325
P +TS RTASL LSNKL++LNYGFEYGALAV++HLD+VFFSD+VTSVMIFY+A D K
Sbjct: 923 VPGKTSTERTASLVLSNKLRKLNYGFEYGALAVRDHLDKVFFSDVVTSVMIFYAARDIKE 982
Query: 3326 TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCVLG 3505
TKG +LSPWV HFH+NKE + +K I+ QSIVDAL+GNY+ FREG+ LPRLFMT Q+C+L
Sbjct: 983 TKGPKLSPWVSHFHINKERMAKKGIHAQSIVDALSGNYHLFREGKMLPRLFMTCQNCLLD 1042
Query: 3506 NEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDIL 3685
N KN EE CI V A +D SPT+LD IRD+V+PVLLQTLIKGF EFKQVDIL
Sbjct: 1043 N-AKNFEESCILVTA--------EDYNSPTILDIIRDTVIPVLLQTLIKGFTEFKQVDIL 1093
Query: 3686 WDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGI 3865
WDS KPDG+L +K+ M +SC R FW LQ+AC+PIMD+IDW RS PDGV+DIS+ FGI
Sbjct: 1094 WDSHSKPDGELIVKVTMAKSCALRNFWHALQNACIPIMDLIDWGRSHPDGVYDISNAFGI 1153
Query: 3866 ISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSP 4045
+S+Y+YFL SLKS +SDIGRNIHLEHLLLVSDSLSVTGEFHGL+AK +KQQ+AHLSIS+P
Sbjct: 1154 VSAYNYFLRSLKSTISDIGRNIHLEHLLLVSDSLSVTGEFHGLTAKALKQQKAHLSISAP 1213
Query: 4046 FTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKET 4225
FT+ACFSNPEK FI+AAK D+L GTVDAVAWGQEAPVGTGG FK++YSGK H PK +
Sbjct: 1214 FTEACFSNPEKSFIDAAKQGLADNLQGTVDAVAWGQEAPVGTGGSFKLMYSGKAHIPKPS 1273
Query: 4226 ENIYEILLKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPA 4405
+N+YE LL K D Q P ADKW + V + GSM+ W+ N T++K+ V SS+
Sbjct: 1274 DNVYETLLSLKSDKPWQTPNADKW-WRGAVSNISGSMKTWDGFNFTSEKKTMVRSSSKSD 1332
Query: 4406 SVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXX 4585
S+ IGSW +I AM S+L R+LHQY ++H LNE DKSL++EALMYHPKKDA
Sbjct: 1333 SMPIGSWSSIEAMRSALRRILHQYSIDHHLNEVDKSLVIEALMYHPKKDAKIGCGIKEIK 1392
Query: 4586 XXHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
P+HP++RCFILIR+DGTTEDFSY KCV EAA Q+S EF L + +L
Sbjct: 1393 VGCGPYHPETRCFILIRSDGTTEDFSYHKCVNEAARQLSIEFKLTKKSDL 1442
Score = 342 bits (878), Expect = 1e-92
Identities = 174/278 (62%), Positives = 205/278 (73%), Gaps = 16/278 (5%)
Frame = +2
Query: 113 KGQSSWKLIMADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVP 292
+ QSS IM D +++MVPSAQLLG+KFDL+TG DIEKFS VN+ND+SDL S KLG+P
Sbjct: 2 QSQSSQHTIMEKDLNSERMVPSAQLLGIKFDLMTGPDIEKFSQVNVNDSSDLNSVKLGLP 61
Query: 293 NACSQCTTCGSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXX 472
NA S+CTTCGST+ DCEGHFGVIKLP IYHPYL+ E+VHILNQICP CKS
Sbjct: 62 NASSECTTCGSTNTKDCEGHFGVIKLPATIYHPYLVNEVVHILNQICPGCKSIKKQTRKD 121
Query: 473 XXXXXTISSIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAEC 652
I +++RLLLKMKFEK+ MPQ QNLLS+VA VKHLKFSGS KKW +V+NQA C
Sbjct: 122 MQIKKKIETLQRLLLKMKFEKLKMPQNQNLLSKVAK--VKHLKFSGSNKKWASVENQASC 179
Query: 653 KHCSRNSEE--WYPAIKFKTL------------SRDTNGKKCVAITAEFN--VPKKFENM 784
K+CS+NS+ WYPAIKF+TL D+ GKKCVAI AE N VP++F N
Sbjct: 180 KYCSKNSQNKYWYPAIKFETLLTDSKGKIVSKGKTDSKGKKCVAIVAEINERVPRQFRNK 239
Query: 785 SLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQ 898
SLSEVLPKDFW+F+PM+ QH SESMD N+I LSP Q
Sbjct: 240 SLSEVLPKDFWDFMPMVSYQHNKSESMDVNKIILSPAQ 277
>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
acuminata subsp. malaccensis]
Length = 1569
Score = 1464 bits (3791), Expect = 0.0
Identities = 783/1599 (48%), Positives = 1041/1599 (65%), Gaps = 70/1599 (4%)
Frame = +2
Query: 149 DSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 328
D I ++ +PS +L G+ FDL+T DIEK +VNI +A+++ S+KLG+PNA SQC TCGS
Sbjct: 4 DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63
Query: 329 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS--- 499
+I DC+GH G +KLP IYHP+ + E+VHILNQICP CK+ S
Sbjct: 64 NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123
Query: 500 ----------------IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLK-FSGSEKKWG 628
++R LLK+ K+ +P T+++L+R +LK + K W
Sbjct: 124 GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLP-TRSILARNTKVRFINLKKILKTRKNWV 182
Query: 629 TVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVL 802
+ D+Q CK+C+R + WYP +KFK S+D G++ ++I AE N +PKKF + SL EVL
Sbjct: 183 SKDSQVCCKYCARKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVL 242
Query: 803 PKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCI 982
P+D+WNF+P + + P++I L+P Q F LL ELD EFI+QFV RREL+FLS +
Sbjct: 243 PEDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYL 298
Query: 983 PVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIAS 1162
P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF HQQFG +A S S
Sbjct: 299 PITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLATSYTMS 358
Query: 1163 RVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGD 1342
RV DC N SKLH++ +S GD S++G++W+K+VVLSKR+DN FRM M+GD
Sbjct: 359 RVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGD 406
Query: 1343 PKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSS 1522
PKI+L EIG+P D+S +L ++E VN++N+EKL SC LHL+ K L R +G+L +H +
Sbjct: 407 PKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKT 466
Query: 1523 DQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDF 1702
+QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDF
Sbjct: 467 NQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDF 526
Query: 1703 DGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFS 1882
DGDCLHG+VPQS+ RV FN QDGRSL+SLTHDSLTAA+LL F +
Sbjct: 527 DGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLN 586
Query: 1883 KFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGD 2062
K +MQQL ML P PA++K P Q+P WTG QLFSM+LP M+F S + + G+
Sbjct: 587 KVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGE 645
Query: 2063 LVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLT 2242
++ S G SF +N +GLF+ MF+ YG KA +YL QE+LCEYLT+RGLSVSL D+YL+
Sbjct: 646 VMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLS 705
Query: 2243 SDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARE 2422
SD Y+R K++DE+ F LEEA+ +C +LMLEPE+ I++ ++ ED ++ A E
Sbjct: 706 SDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYKIASE 764
Query: 2423 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXS 2602
R +SQ SIA FK+++ DL S + +I+ +NS+ M+ AGSKGSL K
Sbjct: 765 RTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLF 824
Query: 2603 AKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 2782
A PLPF++P KL+C WN KA D G+ D + SS G++SYAVI SFLDGL+PLECFV
Sbjct: 825 AHPLPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFV 882
Query: 2783 HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 2962
HA+ R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY E S
Sbjct: 883 HAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DST 941
Query: 2963 EDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLE 3142
E + G+D+ LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+
Sbjct: 942 EGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLD 1001
Query: 3143 CAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAK 3322
C + S N TA L LS +L YG EYGAL VKNHL+RV F +++ +VMI Y HD +
Sbjct: 1002 CCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQ 1061
Query: 3323 GTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSC 3496
GT SPW++HFHV+K+ +LR+R+NVQ + + L +YNC RE LPRL S++C
Sbjct: 1062 GT---NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNC 1118
Query: 3497 VLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 3673
+ K ++ C+SV A E+SE Q LDTIRD V+P+LL+T IKGF ++
Sbjct: 1119 SSAYKWKEHDDSFCMSV-AAETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEK 1170
Query: 3674 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISD 3853
V+IL +S P +LFL++ M + C P FW LQ AC+PIMD+IDW+ S PD V++IS
Sbjct: 1171 VEILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISG 1230
Query: 3854 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 4033
+GI +++ YF+ SLKS +DIGR+IH HL + +D LSVTGEFHGLS KG++QQR +S
Sbjct: 1231 TYGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMS 1290
Query: 4034 ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 4213
ISSPF QAC SNP CF+ AAK S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+
Sbjct: 1291 ISSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHN 1350
Query: 4214 PKETENIYEILLKQKHDSSSQIPGAD-------------KWKGQP-------GVDSAGGS 4333
E IY K H +++ D KWK QP G
Sbjct: 1351 LTRGEGIY----KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDP 1406
Query: 4334 MRRWNEH-----------NC--------------TTKKEKNVVFSSQPASVRIGSWDNIS 4438
+H NC K S+ +S + SW ++
Sbjct: 1407 QTSDEDHLKERIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVV 1466
Query: 4439 AMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSR 4618
M SSL +L++YP++ L+E D S L+EAL YHPK+ A SP HP SR
Sbjct: 1467 DMCSSLRTILYKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSR 1526
Query: 4619 CFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
CF+L+R+DG+ EDFSYRKCV+ AA ISPEFG +V K++
Sbjct: 1527 CFVLLRSDGSLEDFSYRKCVVGAAKLISPEFGSIVHKKI 1565
>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
acuminata subsp. malaccensis]
Length = 1562
Score = 1449 bits (3751), Expect = 0.0
Identities = 780/1599 (48%), Positives = 1036/1599 (64%), Gaps = 70/1599 (4%)
Frame = +2
Query: 149 DSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGST 328
D I ++ +PS +L G+ FDL+T DIEK +VNI +A+++ S+KLG+PNA SQC TCGS
Sbjct: 4 DLIMEQAIPSGRLSGIIFDLMTDADIEKICNVNIVEANEVTSAKLGLPNASSQCATCGSR 63
Query: 329 HIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS--- 499
+I DC+GH G +KLP IYHP+ + E+VHILNQICP CK+ S
Sbjct: 64 NIRDCDGHSGFVKLPKTIYHPFFVTEVVHILNQICPGCKTVKKDLKMKGSVILEASEKAI 123
Query: 500 ----------------IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLK-FSGSEKKWG 628
++R LLK+ K+ +P T+++L+R +LK + K W
Sbjct: 124 GEGIYILEAFGKNLTVLQRRLLKLCRSKLLLP-TRSILARNTKVRFINLKKILKTRKNWV 182
Query: 629 TVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVL 802
+ D+Q R + WYP +KFK S+D G++ ++I AE N +PKKF + SL EVL
Sbjct: 183 SKDSQ-------RKANGWYPPVKFKISSKDILGRRSLSIIAEVNEKLPKKFHSQSLGEVL 235
Query: 803 PKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCI 982
P+D+WNF+P + + P++I L+P Q F LL ELD EFI+QFV RREL+FLS +
Sbjct: 236 PEDYWNFIPKVSLL----QGAKPSKIDLTPHQVFCLLSELDPEFIQQFVSRRELLFLSYL 291
Query: 983 PVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIAS 1162
P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF HQQFG +A S S
Sbjct: 292 PITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLATSYTMS 351
Query: 1163 RVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGD 1342
RV DC N SKLH++ +S GD S++G++W+K+VVLSKR+DN FRM M+GD
Sbjct: 352 RVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFRMTMVGD 399
Query: 1343 PKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSS 1522
PKI+L EIG+P D+S +L ++E VN++N+EKL SC LHL+ K L R +G+L +H +
Sbjct: 400 PKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQLTSLHKT 459
Query: 1523 DQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDF 1702
+QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCAPLLGDF
Sbjct: 460 NQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCAPLLGDF 519
Query: 1703 DGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFS 1882
DGDCLHG+VPQS+ RV FN QDGRSL+SLTHDSLTAA+LL F +
Sbjct: 520 DGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTANREFLN 579
Query: 1883 KFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGD 2062
K +MQQL ML P PA++K P Q+P WTG QLFSM+LP M+F S + + G+
Sbjct: 580 KVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM-ISKGE 638
Query: 2063 LVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLT 2242
++ S G SF +N +GLF+ MF+ YG KA +YL QE+LCEYLT+RGLSVSL D+YL+
Sbjct: 639 VMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSLGDVYLS 698
Query: 2243 SDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARE 2422
SD Y+R K++DE+ F LEEA+ +C +LMLEPE+ I++ ++ ED ++ A E
Sbjct: 699 SDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQYKIASE 757
Query: 2423 RRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXS 2602
R +SQ SIA FK+++ DL S + +I+ +NS+ M+ AGSKGSL K
Sbjct: 758 RTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGACLGLQLF 817
Query: 2603 AKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFV 2782
A PLPF++P KL+C WN KA D G+ D + SS G++SYAVI SFLDGL+PLECFV
Sbjct: 818 AHPLPFTVPSKLNCCMWNNLKALDG--GISDAAKSSCGQSSYAVIGTSFLDGLNPLECFV 875
Query: 2783 HALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSC 2962
HA+ R+N+F+ENAELPGTLTRK+MFYMRD+ +AYDGTVR+AYGQQ+V+FSY E S
Sbjct: 876 HAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIVEFSYSILE-DST 934
Query: 2963 EDCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLE 3142
E + G+D+ LGG PVGS AACSISEAAYG+L+ P+NSLE SPL+ LK VL+
Sbjct: 935 EGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEYSPLMKLKMVLD 994
Query: 3143 CAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAK 3322
C + S N TA L LS +L YG EYGAL VKNHL+RV F +++ +VMI Y HD +
Sbjct: 995 CCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIITVMILYDGHDVQ 1054
Query: 3323 GTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSC 3496
GT SPW++HFHV+K+ +LR+R+NVQ + + L +YNC RE LPRL S++C
Sbjct: 1055 GT---NFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPRLCFVSKNC 1111
Query: 3497 VLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQ 3673
+ K ++ C+SV A E+SE Q LDTIRD V+P+LL+T IKGF ++
Sbjct: 1112 SSAYKWKEHDDSFCMSV-AAETSESLIQ-------LDTIRDMVIPLLLETPIKGFWASEK 1163
Query: 3674 VDILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISD 3853
V+IL +S P +LFL++ M + C P FW LQ AC+PIMD+IDW+ S PD V++IS
Sbjct: 1164 VEILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISG 1223
Query: 3854 VFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLS 4033
+GI +++ YF+ SLKS +DIGR+IH HL + +D LSVTGEFHGLS KG++QQR +S
Sbjct: 1224 TYGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMS 1283
Query: 4034 ISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHS 4213
ISSPF QAC SNP CF+ AAK S DHL GT+DAVAWG+EAP GTGGPF+I+YSGKVH+
Sbjct: 1284 ISSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHN 1343
Query: 4214 PKETENIYEILLKQKHDSSSQIPGAD-------------KWKGQP-------GVDSAGGS 4333
E IY K H +++ D KWK QP G
Sbjct: 1344 LTRGEGIY----KNLHSIKAELQQGDGEVCMAANQTVPAKWKQQPKYSTNFDGAKETIDP 1399
Query: 4334 MRRWNEH-----------NC--------------TTKKEKNVVFSSQPASVRIGSWDNIS 4438
+H NC K S+ +S + SW ++
Sbjct: 1400 QTSDEDHLKERIVSKFRTNCKGYNKQQQISANDFLAKSHLTFGLRSKFSSESVSSWTDVV 1459
Query: 4439 AMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSR 4618
M SSL +L++YP++ L+E D S L+EAL YHPK+ A SP HP SR
Sbjct: 1460 DMCSSLRTILYKYPIDGFLDEKDNSSLIEALNYHPKRAAKIGSGIQKIKVGCSPLHPGSR 1519
Query: 4619 CFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
CF+L+R+DG+ EDFSYRKCV+ AA ISPEFG +V K++
Sbjct: 1520 CFVLLRSDGSLEDFSYRKCVVGAAKLISPEFGSIVHKKI 1558
>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
Length = 1545
Score = 1431 bits (3704), Expect = 0.0
Identities = 769/1580 (48%), Positives = 1032/1580 (65%), Gaps = 48/1580 (3%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
MAD+ I ++ VPS L GLKFDL+TG+DIEK S+ +I +A+DL ++KLG+PNA SQC TC
Sbjct: 1 MADEQIGEQAVPSGILTGLKFDLMTGDDIEKLSNASIVEANDLTNAKLGLPNALSQCATC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPAC------------------- 442
GS ++ C+GHFG IKLP IYHPY + EIV ILNQICP C
Sbjct: 61 GSKNLRGCDGHFGAIKLPAIIYHPYFVGEIVQILNQICPGCLSVKQDQEAKGSSMLEATE 120
Query: 443 KSXXXXXXXXXXXXXTISSIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGS-EK 619
K + +++ LLK+ K+ + +L+R + + +LK K
Sbjct: 121 KFVESDLLILKALEKNLGGLQKKLLKICKSKLLL---SGILARGSKVRICYLKKRVKFRK 177
Query: 620 KWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLS 793
+W D Q+ CK C+ YP+++FK S+D GK+ ++I AE N +PKKF+N S+
Sbjct: 178 RWARTDKQSSCKFCASTPNNRYPSVRFKISSKDMVGKRNLSIVAEVNEKLPKKFQNKSMD 237
Query: 794 EVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFL 973
EVLP+D+W+F+PM Q + + +RITLSP QAF+LL++LD EF++QFVPRREL+FL
Sbjct: 238 EVLPQDYWDFIPMDQQQRQ----LKTSRITLSPHQAFHLLKQLDPEFLKQFVPRRELLFL 293
Query: 974 SCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKIDEFHKHQQFGFVAAS 1150
S +PV+ N R +ET H ++DGP+LS D+ TKAY+ VV+ S++IDEF +H QF A+S
Sbjct: 294 SSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAFASS 353
Query: 1151 LIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNTF 1321
+++RV DCLN SKLHS S N +P S+G LKW+KEV+LSKRSD F
Sbjct: 354 YVSNRVMDCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYAF 401
Query: 1322 RMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGK 1501
R++M+GDPKI+L EIG+P ++ L IS+HVN++N+EKL +SC LHL++K EL ARR G+
Sbjct: 402 RLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQ 461
Query: 1502 LIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCC 1681
LI + DQLQ+GD R LE+GD+I++NR PSVH HSL+ALSVK+LP+ A+SINPLCC
Sbjct: 462 LISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINPLCC 521
Query: 1682 APLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLM 1861
APLLGDFDGDCLHG++PQS+ +RV N QDGRSL+SL+HDSL AA+LL
Sbjct: 522 APLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAYLLT 581
Query: 1862 EGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 2041
+VF SK+EMQ LEML P FP+IIK P P WTG+QLF M+LP ++FS S
Sbjct: 582 GTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVDSKK 641
Query: 2042 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 2221
+ + +G+++ SP +SF ++ S +FS MF+ YG +A ++L S QE+LCEYLTMRGLSVS
Sbjct: 642 LHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGLSVS 701
Query: 2222 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 2401
L D+YL SD Y+R K+ +EV+F L+EA+ +C +L+L+P I ++ + DE ED S++++
Sbjct: 702 LSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSYSVS 761
Query: 2402 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 2581
+F I +ASIA FKD+F D+Q V +Y+S +NS+ +M+ +GSKGSL+K
Sbjct: 762 HYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQQSL 821
Query: 2582 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGL 2761
SA PF IP +LSC WN+ KA + G QD E N YAVI +SFL GL
Sbjct: 822 CLGLQLSASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEERRNFYAVIRSSFLQGL 879
Query: 2762 SPLECFVHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYG 2941
+PLECF+HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGTVR+AYGQQ+VQFSY
Sbjct: 880 NPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQIVQFSYD 939
Query: 2942 SPEKKSCEDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAAYGALDHPVNSLESSP 3115
++ ED HS I D ++ G PVGS AA SISEAAYG L+HPVNSLE SP
Sbjct: 940 ISDEIFHEDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAAYGGLEHPVNSLEDSP 997
Query: 3116 LLNLKKVLECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVM 3295
L+ LK++LEC RT + L LS L+R YGFEYGAL VKNHL+ FS++V +VM
Sbjct: 998 LMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLEITLFSEMVNTVM 1057
Query: 3296 IFYSAHDAKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLP 3469
I Y + ++SPW HFH++KE + +KR+ VQ ++D L NY+ RE LP
Sbjct: 1058 ILYEC----PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLMREKSAGVLP 1113
Query: 3470 RLFMTSQSCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTL 3646
L +T ++C L +E L++ +CI+V A + S T LDTI+D V+ +LL TL
Sbjct: 1114 ALCITKKNCPLLDEHDELDQTVCIAVAA--------EVLDSVTQLDTIKDVVILILLNTL 1165
Query: 3647 IKGFKEFKQVDILWDSQPKPDG-QLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERS 3823
+KGF K V+I Q +PD +L LK+ M ESC +FW TLQ AC+PIMD+IDW S
Sbjct: 1166 VKGFLGIKHVEI----QCQPDSTELSLKVTMSESCSRGRFWSTLQDACIPIMDLIDWNSS 1221
Query: 3824 RPDGVHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAK 4003
P+ ++D V+GI +++ YFL SLKSA S IGR+IH E L+ V+D SVTGEFHGLS K
Sbjct: 1222 HPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVADCFSVTGEFHGLSTK 1281
Query: 4004 GIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPF 4183
G+KQQR LSISSPF+ ACFS+P FI AAK S D L G +DAV+WG+E PVGTGGPF
Sbjct: 1282 GLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDAVSWGKEPPVGTGGPF 1341
Query: 4184 KIIYSGKVHSPKETENIYEILLKQKHDSSSQIPGA---------DKWKGQPGVDSAG--G 4330
+II+S KV +++E+IY++L K + KW+ + G G
Sbjct: 1342 EIIFSQKVPQLQKSESIYKVLHNLKVEEPKPESAVACRASNRSNSKWRLNIPTFANGHAG 1401
Query: 4331 SMRRW--NEHNCTTKKE---KNVVFSSQPASVRIGSWDNISAMSSSLSRMLHQYPVNHQL 4495
+W N + T+ E K + S+ ++GSW +I M +SL MLH+YP + +
Sbjct: 1402 KKDKWKCNFNKGATQTEGRPKKLAVQSEFLMRKVGSWASIVDMCTSLRAMLHEYPYDGIV 1461
Query: 4496 NEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRCFILIRNDGTTEDFSYRKC 4675
E DKS LMEAL YHPK+D H P H SRCFIL+R DGT +DFSYRKC
Sbjct: 1462 GEKDKSSLMEALKYHPKRDEKIGVGVQDIKIGHHPTHRCSRCFILVRKDGTMDDFSYRKC 1521
Query: 4676 VIEAANQISPEFGLMVEKEL 4735
V+ AA +S EFG +VEK+L
Sbjct: 1522 VVGAAKMLSTEFGSIVEKKL 1541
>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
Length = 1556
Score = 1356 bits (3510), Expect = 0.0
Identities = 736/1535 (47%), Positives = 998/1535 (65%), Gaps = 32/1535 (2%)
Frame = +2
Query: 227 EKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGHFGVIKLPTAIYHPYLIYE 406
EK S+ +I +A+DL ++KLG+PNA SQC TCGS ++ C+GHFG IKLP IYHPY + E
Sbjct: 65 EKLSNASIVEANDLTNAKLGLPNALSQCATCGSKNLRGCDGHFGAIKLPAIIYHPYFVGE 124
Query: 407 IVHILNQICPACKSXXXXXXXXXXXXX--TISSIKRLLLKMKFEKITMPQTQNLLSRVAN 580
IV ILNQICP C S T ++ LL +K + + Q L ++
Sbjct: 125 IVQILNQICPGCLSVKQDQEAKGSSMLEATEKFVESDLLILKALEKNLGGLQKKLLKICK 184
Query: 581 AHV--KHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLSRDTNGKKCVAITAE 754
+ + + GS+ + + + + + + N+ YP+++FK S+D GK+ ++I AE
Sbjct: 185 SKLLLSGILARGSKVRICYLKKRVKFRKSTPNNR--YPSVRFKISSKDMVGKRNLSIVAE 242
Query: 755 FN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDK 928
N +PKKF+N S+ EVLP+D+W+F+PM Q + + +RITLSP QAF+LL++LD
Sbjct: 243 VNEKLPKKFQNKSMDEVLPQDYWDFIPMDQQQRQ----LKTSRITLSPHQAFHLLKQLDP 298
Query: 929 EFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKI 1105
EF++QFVPRREL+FLS +PV+ N R +ET H ++DGP+LS D+ TKAY+ VV+ S++I
Sbjct: 299 EFLKQFVPRRELLFLSSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRI 358
Query: 1106 DEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LK 1276
DEF +H QF A+S +++R+H S N +P S+G LK
Sbjct: 359 DEFRQHPQFRAFASSYVSNRLHS---------------------STSNGEPISSGVSGLK 397
Query: 1277 WIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRL 1456
W+KEV+LSKRSD FR++M+GDPKI+L EIG+P ++ L IS+HVN++N+EKL +SC L
Sbjct: 398 WLKEVILSKRSDYAFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNL 457
Query: 1457 HLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVK 1636
HL++K EL ARR G+LI + DQLQ+GD R LE+GD+I++NR PSVH HSL+ALSVK
Sbjct: 458 HLLNKEELHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVK 517
Query: 1637 ILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSL 1816
+LP+ A+SINPLCCAPLLGDFDGDCLHG++PQS+ +RV N QDGRSL
Sbjct: 518 VLPIHFAISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSL 577
Query: 1817 LSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFS 1996
+SL+HDSL AA+LL +VF SK+EMQ LEML P FP+IIK P P WTG+QLF
Sbjct: 578 VSLSHDSLVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFG 637
Query: 1997 MMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQ 2176
M+LP ++FS S + + +G+++ SP +SF ++ S +FS MF+ YG +A ++L S Q
Sbjct: 638 MLLPPGIDFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQ 697
Query: 2177 EVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGII 2356
E+LCEYLTMRGLSVSL D+YL SD Y+R K+ +EV+F L+EA+ +C +L+L+P I +
Sbjct: 698 ELLCEYLTMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFL 757
Query: 2357 IKAHDETEDLSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMY 2536
+ + DE ED S++++ +F I +ASIA FKD+F D+Q V +Y+S +NS+ +M+
Sbjct: 758 LSSLDECEDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQ 817
Query: 2537 AGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEG 2716
+GSKGSL+K SA PF IP +LSC WN+ KA + G QD E
Sbjct: 818 SGSKGSLSKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALE--CGDQDAIRCEER 875
Query: 2717 ENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGT 2896
N YAVI +SFL GL+PLECF+HA+S R+N F ENAE+PGTLTRK+ FY+RD+ VAYDGT
Sbjct: 876 RNFYAVIRSSFLQGLNPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGT 935
Query: 2897 VRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSACDRLG--GHPVGSLAACSISEAA 3070
VR+AYGQQ+VQFSY ++ ED HS I D ++ G PVGS AA SISEAA
Sbjct: 936 VRSAYGQQIVQFSYDISDEIFHEDA-HSRI-ISNDHIVEKYNGLGAPVGSWAASSISEAA 993
Query: 3071 YGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLALSNKLKRLNYGFEYGALAVKN 3250
YG L+HPVNSLE SPL+ LK++LEC RT + L LS L+R YGFEYGAL VKN
Sbjct: 994 YGGLEHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKN 1053
Query: 3251 HLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALA 3430
HL+ FS++V +VMI Y + ++SPW HFH++KE + +KR+ VQ ++D L
Sbjct: 1054 HLEITLFSEMVNTVMILYEC----PLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLM 1109
Query: 3431 GNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEE-LCISVGAVESSERKEQDEPSPTLL 3601
NY+ RE LP L +T ++C L +E L++ +CI+V A + S T L
Sbjct: 1110 ENYSLMREKSAGVLPALCITKKNCPLLDEHDELDQTVCIAVAA--------EVLDSVTQL 1161
Query: 3602 DTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDG-QLFLKIIMEESCPPRKFWRTLQ 3778
DTI+D V+ +LL TL+KGF K V+I Q +PD +L LK+ M ESC +FW TLQ
Sbjct: 1162 DTIKDVVILILLNTLVKGFLGIKHVEI----QCQPDSTELSLKVTMSESCSRGRFWSTLQ 1217
Query: 3779 SACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVS 3958
AC+PIMD+IDW S P+ ++D V+GI +++ YFL SLKSA S IGR+IH E L+ V+
Sbjct: 1218 DACIPIMDLIDWNSSHPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVA 1277
Query: 3959 DSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDA 4138
D SVTGEFHGLS KG+KQQR LSISSPF+ ACFS+P FI AAK S D L G +DA
Sbjct: 1278 DCFSVTGEFHGLSTKGLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDA 1337
Query: 4139 VAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLKQKHDSSSQIPGA---------D 4291
V+WG+E PVGTGGPF+II+S KV +++E+IY++L K +
Sbjct: 1338 VSWGKEPPVGTGGPFEIIFSQKVPQLQKSESIYKVLHNLKVEEPKPESAVACRASNRSNS 1397
Query: 4292 KWKGQPGVDSAG--GSMRRW--NEHNCTTKKE---KNVVFSSQPASVRIGSWDNISAMSS 4450
KW+ + G G +W N + T+ E K + S+ ++GSW +I M +
Sbjct: 1398 KWRLNIPTFANGHAGKKDKWKCNFNKGATQTEGRPKKLAVQSEFLMRKVGSWASIVDMCT 1457
Query: 4451 SLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRCFIL 4630
SL MLH+YP + + E DKS LMEAL YHPK+D H P H SRCFIL
Sbjct: 1458 SLRAMLHEYPYDGIVGEKDKSSLMEALKYHPKRDEKIGVGVQDIKIGHHPTHRCSRCFIL 1517
Query: 4631 IRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
+R DGT +DFSYRKCV+ AA +S EFG +VEK+L
Sbjct: 1518 VRKDGTMDDFSYRKCVVGAAKMLSTEFGSIVEKKL 1552
>ref|XP_020681065.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Dendrobium
catenatum]
Length = 1499
Score = 1344 bits (3479), Expect = 0.0
Identities = 729/1540 (47%), Positives = 998/1540 (64%), Gaps = 9/1540 (0%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
MA ++ PSA+L G+KF+L+TGE++E FS V+I + +DLV +KLG+P+ SQC+ C
Sbjct: 1 MASGPTICQITPSARLSGIKFELMTGEEMELFSSVSILEVNDLVDAKLGLPSTSSQCSAC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS 499
GST++ DC+GHFGVIKLP ++YHPY + EIVHILNQICP CKS ++
Sbjct: 61 GSTNVKDCDGHFGVIKLPISVYHPYFLPEIVHILNQICPGCKSFRHESRIKRRLIHSVRK 120
Query: 500 IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGS-EKKWGTVDNQAECKHCSRNSE 676
++++ ++T + +LS + +LK K+ G + + CK+C+ +S
Sbjct: 121 KLLRYIRLRLSRLT----RKVLSGDLKDDISYLKIRKHIYKEVGAIGKNSGCKYCASSSF 176
Query: 677 EWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHE 850
EWYP +KFK +RD G+K ++I AE N +PKKF+N S E+LPKD+WNFVP +
Sbjct: 177 EWYPTLKFKISNRDVQGRKGLSILAEVNEKLPKKFQNRSFGELLPKDYWNFVP----NYH 232
Query: 851 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 1030
+ ++ N I LSP Q F LL++LD +FI QFV RREL+FLSC+PV+PN R+VET H +
Sbjct: 233 KQQGLNSNSIFLSPWQVFCLLKQLDLDFINQFVSRRELLFLSCLPVTPNSHRIVETTHAF 292
Query: 1031 SDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKA 1210
SDG R+S D+ TK Y+ +VD KK+D +H Q + +S I RV +C SKL S+K
Sbjct: 293 SDGSRISFDERTKIYKRMVDLGKKLDGVLQHPQLRALTSSFITDRVRECFVSSKLRSHKL 352
Query: 1211 STGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSR 1390
+GD S S G+KW+KEVVLSKR+D+ FRM M+GDPK++L E+G+P D++R
Sbjct: 353 LSGDSSSNIS---------GMKWLKEVVLSKRTDHAFRMTMVGDPKVRLDEVGIPYDIAR 403
Query: 1391 TLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDG 1570
+L+++E+V+ N+E L++S +HL R KLIF H SD L +GD + R L DG
Sbjct: 404 SLFVTEYVSKFNLETLRASQGIHLW--------RDQKLIFNHKSD-LHIGDRIERPLADG 454
Query: 1571 DIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRAR 1750
DI++VNR PSVH HSL+ALS KILP++S VSINPLCC+PLLGDFDGDCLHG+VPQS+ R
Sbjct: 455 DIVLVNRPPSVHQHSLIALSAKILPIDSVVSINPLCCSPLLGDFDGDCLHGYVPQSIHCR 514
Query: 1751 VXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQ 1930
V N DGR+LLSLTHDSLTAA+LL E F +KFE+QQLEM +S
Sbjct: 515 VELQELVSLDCQLLNGLDGRNLLSLTHDSLTAAYLLTAKEAFLNKFEIQQLEMFCHHQSP 574
Query: 1931 FPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFIS 2110
PAII P ++ P WTG+QL SM+ P ++ S + G+L+ P +N +
Sbjct: 575 VPAIITGPNLESPLWTGQQLLSMLFPPLVDLYEASRTLHHFKGELLFDPQFLSWLQNKPN 634
Query: 2111 GLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFA 2290
+F M YG KA +YLFS QEVLCEYLTMRGL+VSL D+YLTSD YTR K+ DEV+F
Sbjct: 635 SIFYWMSTNYGEKALDYLFSAQEVLCEYLTMRGLTVSLGDVYLTSDSYTRTKMTDEVNFG 694
Query: 2291 LEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDLF 2470
L+EA +C E +L + + A D+ LS L + I Q SI FK++F
Sbjct: 695 LQEAADACRATERLLN-KFDSSVNAIDDAAGLSLPLRLQKLTCSITRIIQESITAFKNIF 753
Query: 2471 RDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSCPE 2650
D+Q + YI S NS+ M+ AGSKGSL K SA +PF+IP LSC +
Sbjct: 754 SDIQYAILSYIGSNNSMLAMINAGSKGSLLKLVQQGACLGMQFSANEIPFNIPSVLSCEQ 813
Query: 2651 WNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAEL 2830
WNQ K F ++ + D +N + + +AVI+AS LDGL+PLECF H+LS R+N+FSENA+L
Sbjct: 814 WNQQKKFHQNRVLDD-ANGEDVQKHFAVIKASLLDGLNPLECFFHSLSGRANLFSENAQL 872
Query: 2831 PGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEK-KSCEDCDHSHFSIGEDSA 3007
PGTL+RK+MFYMRD+ VAYDG+VRN YG+++VQF Y PEK K C S ++++
Sbjct: 873 PGTLSRKLMFYMRDLYVAYDGSVRNVYGEEIVQFCYNFPEKGKFC------RVSSEKEAS 926
Query: 3008 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 3187
GG PVGS A+CS++E AYGAL+ PVN L SPLLNLK +LE + TS TASL
Sbjct: 927 TSIPGGQPVGSWASCSLTETAYGALECPVNPLCPSPLLNLKALLETSTGTTSGVHTASLF 986
Query: 3188 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 3367
LSNKL+RL YGFE+GAL VK+ L+ + F++IVT++ IFY +A + LSPWV+HF+
Sbjct: 987 LSNKLRRLRYGFEHGALEVKSQLEMILFAEIVTTIKIFYVRKEA---HRIGLSPWVIHFY 1043
Query: 3368 VNKEMILRKRINVQSIVDALAGNYNCFRE-GRKLPRLFMTSQSCVLGNEQKNLEEL-CIS 3541
++KE + R+++ ++ D L +Y LP+LF+ S+ + ++ + + CI+
Sbjct: 1044 IDKERMSSTRLDMHAVKDQLLRSYEQRAALDDSLPKLFLESKYYLPDDKHEKPGAMNCIT 1103
Query: 3542 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILW-DSQPKPDGQL 3718
V AVE ++ S LLD +RD V+P LL++LIKGF E ++VDILW D+Q +G+L
Sbjct: 1104 V-AVEFTD-------SHILLDILRDLVIPCLLKSLIKGFSEIRKVDILWDDAQKNSNGEL 1155
Query: 3719 FLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLGSL 3898
FLK+ M E+C KFW ++Q+ACLPIMD+IDW RS P+ + +IS +FGI +S+ +FL SL
Sbjct: 1156 FLKVTMSENCSLGKFWSSIQNACLPIMDLIDWNRSHPNDICNISSMFGISASWLFFLRSL 1215
Query: 3899 KSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEK 4078
KS D+GR++ EHL +V+D L ++GEFHGL+ KG+K QR + + SSPFT ACFSNP
Sbjct: 1216 KSTALDVGRSVRQEHLNIVADRLFISGEFHGLNKKGLKVQRDYTTTSSPFTFACFSNPAS 1275
Query: 4079 CFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLKQK 4258
CFI+AAK D L GT+ A++WG+E+P GTGGPFKIIYSGKV +PKE E+IY +L Q
Sbjct: 1276 CFIDAAKQDYEDSLRGTIGAISWGKESPTGTGGPFKIIYSGKVCNPKEGESIYSMLQCQD 1335
Query: 4259 HDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASV--RIGSWDN 4432
K G+P S + W++ NC T+ E + F+ Q + R GS+ +
Sbjct: 1336 I--------IRKKMGKPLHVGDICSSKNWDQ-NCCTQYEGHTDFAFQRKFLAHRNGSYTH 1386
Query: 4433 ISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPK 4612
I M S+L +L +YP+N + AD+ +LM+AL HP DA +S H
Sbjct: 1387 IINMESTLRAILLKYPINRYVTAADREILMKALARHPSSDAKIGTGVQDIKVGYSSEHKG 1446
Query: 4613 SRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKE 4732
S+CFIL+R DGTTEDFSY KCV AA Q+SPE + EK+
Sbjct: 1447 SKCFILVRKDGTTEDFSYHKCVAGAAAQVSPECAAIFEKK 1486
>ref|XP_020572386.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
ref|XP_020572387.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
ref|XP_020572388.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Phalaenopsis
equestris]
Length = 1503
Score = 1330 bits (3442), Expect = 0.0
Identities = 723/1549 (46%), Positives = 992/1549 (64%), Gaps = 13/1549 (0%)
Frame = +2
Query: 137 IMADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTT 316
IMAD + +PSA+L G+KF+L+TGE++E+FS V+I D +DLV +KLG+P+ SQC+T
Sbjct: 3 IMADCPTVFETIPSARLNGIKFELMTGEEMERFSSVSILDVNDLVDAKLGLPSTSSQCST 62
Query: 317 CGSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTIS 496
CGS + DC+GHFGVIKLP ++YHPY + EIVHILNQICP CKS T+
Sbjct: 63 CGSKSVKDCDGHFGVIKLPISVYHPYFLPEIVHILNQICPGCKSVRHESQIKRRLFHTVR 122
Query: 497 SIKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGS-EKKWGTVDNQAECKHCSRNS 673
+++ ++T + +LS + +LK K+ GT+ N++ CK+C+ +S
Sbjct: 123 KKLLRYIRLSLSRLT----RKVLSGDLKDDISYLKIRKHISKEVGTIGNKSGCKYCASSS 178
Query: 674 EEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQH 847
EWYP +KFK ++D G+K ++I AE N +PKKF+N S E+LPKDFWNFVP ++
Sbjct: 179 FEWYPTLKFKISNKDFQGRKGLSILAEVNAKLPKKFQNRSFGELLPKDFWNFVP----KY 234
Query: 848 ENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 1027
+ ++ N I LSP Q F LL++LD++FI QFV RREL+FLSC+PV+PN R+VE H
Sbjct: 235 HKQQCLNSNSIFLSPWQVFSLLKQLDRDFINQFVSRRELLFLSCLPVTPNSHRIVEVTHA 294
Query: 1028 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 1207
+DG R+S D TK Y+ + D KK+D +H QF + +S I RV +C SKL S
Sbjct: 295 LTDGSRISFDDRTKIYKRMADLGKKLDGVLQHPQFRALTSSFITDRVRECFVSSKLRSRA 354
Query: 1208 ASTGDHSKYYSKQNDQPSS-TGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDV 1384
+GD PSS +G+KW+KEVVLSKR+D FRM M+GDPK++L E+G+P D+
Sbjct: 355 LLSGD----------SPSSVSGMKWLKEVVLSKRTDYAFRMTMVGDPKLRLDEVGIPSDI 404
Query: 1385 SRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLE 1564
+R+L+++E V N+EKL++S R+ L + +LIF H S++LQ+GD + R L
Sbjct: 405 ARSLFVTEFVTKFNLEKLRTSQRIRLW--------KDQRLIFNHKSNELQLGDRIERPLA 456
Query: 1565 DGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVR 1744
DGD+++VNR PSVH HSL+ALSV+ILP +S VSINPL C+PLLGDFDGDCLHG+VPQS+
Sbjct: 457 DGDVVLVNRPPSVHQHSLIALSVRILPTDSVVSINPLICSPLLGDFDGDCLHGYVPQSIH 516
Query: 1745 ARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCK 1924
R+ N DGR+LLSLTHDSLTAA+ L + F +KFE+QQLEML +
Sbjct: 517 CRIELQELVSLDSQLLNGLDGRNLLSLTHDSLTAAYFLTSKDAFLNKFEIQQLEMLCHHQ 576
Query: 1925 SQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNF 2104
S PAI+ P + WTG QL +M+ P ++ S + G+L+ P +N
Sbjct: 577 SPVPAIVTGPNPKSALWTGHQLLNMLFPPLVDLYESSRTLRHFKGELLFEPQFLCWLQNK 636
Query: 2105 ISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVS 2284
+ ++ M YG KA +YLFS QEVLCEYLTMRG +VSL D+YLT+D YTR K+IDEV+
Sbjct: 637 PNSIYYWMSTNYGKKALDYLFSAQEVLCEYLTMRGFTVSLGDIYLTTDSYTRMKMIDEVN 696
Query: 2285 FALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKD 2464
F L+EA SC E L G + + D+ ED +L + R + Q SIA FK+
Sbjct: 697 FGLQEAADSCRAREHFLNKFDG-SLNSIDDVEDTFLSLKLQKLKSSRTRLIQESIAAFKN 755
Query: 2465 LFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSC 2644
+F D+Q + Y+ + +S+ M+ AGSKGSL K SA +PF+IP LSC
Sbjct: 756 IFCDIQYAILNYVGNNSSMLAMINAGSKGSLLKLVQQGACLGMQFSASEIPFNIPRVLSC 815
Query: 2645 PEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENA 2824
WNQ K + + D S + +AVI++S LDGL+PLECF HALS R+N+FSENA
Sbjct: 816 EHWNQQKKLHQHRVLDDAEGGSI-QKHFAVIKSSLLDGLNPLECFFHALSGRANLFSENA 874
Query: 2825 ELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEK-KSCEDCDHSHFSIGED 3001
+LPGTL+RK+MFYMRD+ VAYDG+VRN YG+++VQF Y PE K C+ S +
Sbjct: 875 QLPGTLSRKLMFYMRDLYVAYDGSVRNVYGEEIVQFCYNFPENGKFCK------ISSERE 928
Query: 3002 SACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTAS 3181
+ GG PVGS+A+CS+SE AYGAL+ PVN SPLLN K +LE + S TAS
Sbjct: 929 VSRSVPGGQPVGSMASCSLSETAYGALECPVNPFCPSPLLNFKALLERSTGTISGVHTAS 988
Query: 3182 LALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLH 3361
L LSNKL+RL YGFE+ AL VK+ L V F++IV ++ I Y+ D T+ + LSPWV+H
Sbjct: 989 LFLSNKLRRLRYGFEHAALVVKSQLGHVLFAEIVRTITILYARKD---TQRVGLSPWVIH 1045
Query: 3362 FHVNKEMILRKRINVQSIVDALAGNYNCFRE-GRKLPRLFMTSQSCVLGNEQKNLEEL-C 3535
F+V+KE + +R+ Q++ D L +Y LP+LF+ S+ + ++Q+ + C
Sbjct: 1046 FYVDKESMSSRRLEAQNVKDQLVRSYEKKAALNDSLPKLFIESKYHLPDDKQEKSGAMNC 1105
Query: 3536 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILW-DSQPKPDG 3712
I++ AVE ++ SP LLDT+R V+P LL++LIKGF EF++VDILW D+Q +G
Sbjct: 1106 ITL-AVEFAD-------SPILLDTLRHLVLPCLLKSLIKGFSEFEKVDILWDDTQKNSNG 1157
Query: 3713 QLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLG 3892
+LFLK+ M E+C P KFW ++Q+AC+PIMD+IDW RS P+ + +IS +FGI +++ FL
Sbjct: 1158 ELFLKVTMSETCSPGKFWNSIQNACVPIMDLIDWNRSHPNDICNISSMFGISAAWIIFLR 1217
Query: 3893 SLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNP 4072
SLKS D+GRN+ EHL +V+D L +GEF+GLS KG+K Q+ + SSPFT ACFSNP
Sbjct: 1218 SLKSTALDVGRNVRQEHLKIVADRLFFSGEFYGLSKKGLKMQKDFTANSSPFTFACFSNP 1277
Query: 4073 EKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLK 4252
CF++AAK TD L+GT+DA++WG+E+P+GTGGPFKI+YSGKV +PKE IY +L
Sbjct: 1278 ASCFVDAAKQDCTDSLHGTIDAISWGKESPIGTGGPFKIMYSGKVSNPKEGVGIYSMLQC 1337
Query: 4253 QKHDSSSQIPGADKWKGQP---GVDSAGGSMRRWNEHNCTTKKEKNVVFSSQP--ASVRI 4417
Q DK +P G D ++W+E NC T+ E + F+ Q + +
Sbjct: 1338 QDI--------IDKRMEEPLHAGDDIC--KSKKWDE-NCCTEYEGHTDFAFQKGLGARQN 1386
Query: 4418 GSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHS 4597
GS+ +I M SL +L +YP+N + AD+ +LM+AL HP DA +S
Sbjct: 1387 GSYSHIVNMEFSLRAILLKYPINRYVTAADREILMKALARHPSCDAKIGSGVQDIMVGYS 1446
Query: 4598 PFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPR 4744
H S+CFIL+R DGTTEDFSY KCV AA QISPE M EK R
Sbjct: 1447 SEHKGSKCFILVRKDGTTEDFSYHKCVAGAAAQISPECAAMFEKRYHRR 1495
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
ref|XP_020394614.1| DNA dependent RNA polymerase D largest subunit isoform X1 [Zea mays]
gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
Length = 1444
Score = 1266 bits (3276), Expect = 0.0
Identities = 701/1540 (45%), Positives = 959/1540 (62%), Gaps = 21/1540 (1%)
Frame = +2
Query: 173 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 352
P A L +KFDL+T D+EK S ++I + SD+ S KLG+PN QC TCGS DC+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 353 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKFE 532
FGV KL +++PY I ++VH LN+ICP C S KRL + E
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI-----------DTKRL----ERE 112
Query: 533 KITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 712
K+ QA CK+CS++ + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYCSKDGSKLYPSIVFKTLS 138
Query: 713 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 850
R+ + + ++I AE +P + + E LP DFW+FVP S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195
Query: 851 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 1030
+S + +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE +
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254
Query: 1031 SDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKA 1210
DG RL+ D TKAY+ +VD S++ID++ +H F +A+SL++SRV +CL SKL+S KA
Sbjct: 255 PDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA 313
Query: 1211 STGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSR 1390
+ Y G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P D+S
Sbjct: 314 DGETSTDTY----------GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSS 363
Query: 1391 TLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDG 1570
+L +SEHV+++N + C LHL++K EL RR GKL+F+ +DQL++GD R L+DG
Sbjct: 364 SLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDG 423
Query: 1571 DIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRAR 1750
DII++NR PSVH HSL+ALS KILP+ S VSINPLCC P GDFDGDCLHG++PQS+R+R
Sbjct: 424 DIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSR 483
Query: 1751 VXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKS 1927
V N+QDGR+L+SLTHDSL AAHLL +VF K E+QQL+ML +
Sbjct: 484 VELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVST 543
Query: 1928 QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2107
PA+IK+ Q WTG+QLFSM+LP M FS + + + + L S G S+ N
Sbjct: 544 PAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-T 602
Query: 2108 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2287
SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V
Sbjct: 603 SGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKL 662
Query: 2288 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2467
AL EA+ + +++L+P ++K HDETED+ T S+ + + ++SI FKD+
Sbjct: 663 ALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDV 720
Query: 2468 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSCP 2647
FRDL +V ++S++NS+ M+ AGSKGS+ K A PF IP +LSC
Sbjct: 721 FRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCI 780
Query: 2648 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2827
WN K+ + + TS G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA+
Sbjct: 781 SWNGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENAD 838
Query: 2828 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 3007
+PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S D
Sbjct: 839 VPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDL 881
Query: 3008 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 3187
D+LG PVG AACSISEAAYGAL+HPVN LE SPL+NL++V +C S + L
Sbjct: 882 VDKLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940
Query: 3188 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 3367
LS LK+ YG EY +L VKNHL+RV FSD+V ++MI Y HD +GM W HFH
Sbjct: 941 LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFH 996
Query: 3368 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 3541
+NK M+ +KR+ ++ +VD LA Y+ R+ +P + ++ + C++G+E CI+
Sbjct: 997 INKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIA 1056
Query: 3542 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 3721
V V +ER S + LDTI+ V+P +L TL+KGF EFK V+I Q DG+L
Sbjct: 1057 V--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELL 1105
Query: 3722 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLGSLK 3901
+K+ M E C +FW TLQ+AC+P+M++IDWE S+P V DI +GI S++ YF+ SLK
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165
Query: 3902 SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 4081
SA +D GRNI EHLL+++DSLSVTG+FH LS++G+KQQR LSISSPF++ACFS P +
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225
Query: 4082 FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLKQKH 4261
FI AAK S D+L G++DAVAWG+E GT GPF+I++SGK H P++ E+IY+ L
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFL----- 1280
Query: 4262 DSSSQIPGADK----WKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWD 4429
SS++ +K + Q +++ + + TT + ++ WD
Sbjct: 1281 -CSSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWD 1339
Query: 4430 NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHP 4609
NI M +SL ML +YP+N + E DKS L+EAL +H + +P HP
Sbjct: 1340 NIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHP 1399
Query: 4610 KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEK 4729
+RCFIL+RND TTEDFSY KCV AA+ ISP+ G ++K
Sbjct: 1400 GTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 1262 bits (3265), Expect = 0.0
Identities = 700/1540 (45%), Positives = 958/1540 (62%), Gaps = 21/1540 (1%)
Frame = +2
Query: 173 PSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEGH 352
P A L +KFDL+T D+EK S ++I + SD+ S KLG+PN QC TCGS DC+GH
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCDGH 67
Query: 353 FGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKFE 532
FGV KL +++PY I ++VH LN+ICP C S KRL + E
Sbjct: 68 FGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGI-----------DTKRL----ERE 112
Query: 533 KITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTLS 712
K+ QA CK+ S++ + YP+I FKTLS
Sbjct: 113 KV----------------------------------QATCKYYSKDGSKLYPSIVFKTLS 138
Query: 713 ------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQHE 850
R+ + + ++I AE +P + + E LP DFW+FVP S+++
Sbjct: 139 SPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEGLPLDFWDFVP---SENK 195
Query: 851 NSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTY 1030
+S + +I LSP Q FY+L++ D E I+QFV RREL+FLSC+PV+PNC RVVE +
Sbjct: 196 QVQS-NMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGL 254
Query: 1031 SDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKA 1210
DG RL+ D TKAY+ +VD S++ID++ +H F +A+SL++SRV +CL SKL+S KA
Sbjct: 255 PDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVSECLKSSKLYSKKA 313
Query: 1211 STGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSR 1390
+ Y G+KW+K+VVLSKRSDN FR IM+GDPKI+L EIG+P D+S
Sbjct: 314 DGETSTDTY----------GMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPEDLSS 363
Query: 1391 TLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDG 1570
+L +SEHV+++N + C LHL++K EL RR GKL+F+ +DQL++GD R L+DG
Sbjct: 364 SLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDG 423
Query: 1571 DIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRAR 1750
DII++NR PSVH HSL+ALS KILP+ S VSINPLCC P GDFDGDCLHG++PQS+R+R
Sbjct: 424 DIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSR 483
Query: 1751 VXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML-FPCKS 1927
V N+QDGR+L+SLTHDSL AAHLL +VF K E+QQL+ML +
Sbjct: 484 VELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVST 543
Query: 1928 QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2107
PA+IK+ Q WTG+QLFSM+LP M FS + + + + L S G S+ N
Sbjct: 544 PAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNN-T 602
Query: 2108 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2287
SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVSL D+Y+ SD Y+R KL + V
Sbjct: 603 SGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGVKL 662
Query: 2288 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2467
AL EA+ + +++L+P ++K HDETED+ T S+ + + ++SI FKD+
Sbjct: 663 ALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYRQSDCIQSNPSVIRSSIMAFKDV 720
Query: 2468 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSCP 2647
FRDL +V ++S++NS+ M+ AGSKGS+ K A PF IP +LSC
Sbjct: 721 FRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCI 780
Query: 2648 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2827
WN K+ + + TS G+N YAVI+ SF++GL+PLEC +HA+S R+N FSENA+
Sbjct: 781 SWNGQKSLNYE--AESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENAD 838
Query: 2828 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 3007
+PGTLTRK+M+++RDI VAYDGTVR++YGQQ+VQFSY S D
Sbjct: 839 VPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDS-----------------VDDL 881
Query: 3008 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 3187
D+LG PVG AACSISEAAYGAL+HPVN LE SPL+NL++V +C S + L
Sbjct: 882 VDKLGA-PVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940
Query: 3188 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 3367
LS LK+ YG EY +L VKNHL+RV FSD+V ++MI Y HD +GM W HFH
Sbjct: 941 LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGHDKIRNEGM----WTTHFH 996
Query: 3368 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 3541
+NK M+ +KR+ ++ +VD LA Y+ R+ +P + ++ + C++G+E CI+
Sbjct: 997 INKAMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIA 1056
Query: 3542 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 3721
V V +ER S + LDTI+ V+P +L TL+KGF EFK V+I Q DG+L
Sbjct: 1057 V--VAHAERN-----SISQLDTIKTRVIPSILDTLLKGFLEFKDVEI----QCPHDGELL 1105
Query: 3722 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLGSLK 3901
+K+ M E C +FW TLQ+AC+P+M++IDWE S+P V DI +GI S++ YF+ SLK
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165
Query: 3902 SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 4081
SA +D GRNI EHLL+++DSLSVTG+FH LS++G+KQQR LSISSPF++ACFS P +
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225
Query: 4082 FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLKQKH 4261
FI AAK S D+L G++DAVAWG+E GT GPF+I++SGK H P++ E+IY+ L
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFL----- 1280
Query: 4262 DSSSQIPGADK----WKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWD 4429
SS++ +K + Q +++ + + TT + ++ WD
Sbjct: 1281 -CSSKVRNFEKNHLDTRRQSTENASICRLACKSSKGSTTVNGVAITIDQDFLHAKVSIWD 1339
Query: 4430 NISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHP 4609
NI M +SL ML +YP+N + E DKS L+EAL +H + +P HP
Sbjct: 1340 NIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHP 1399
Query: 4610 KSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEK 4729
+RCFIL+RND TTEDFSY KCV AA+ ISP+ G ++K
Sbjct: 1400 GTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKK 1439
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X4
[Nelumbo nucifera]
Length = 1489
Score = 1256 bits (3249), Expect = 0.0
Identities = 691/1564 (44%), Positives = 964/1564 (61%), Gaps = 41/1564 (2%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
M DD ++ VPS L G++F++LT EDIEK S I+ A+++ +LG PN SQC+TC
Sbjct: 1 MDDDVFIEQQVPSGFLKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS 499
G ++ +C+GH G+IK + +P+ I E V ILN ICP C+S
Sbjct: 61 GGKNLKNCDGHIGIIKFAVNVLNPFFISETVQILNSICPGCRSV---------------- 104
Query: 500 IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSR--NS 673
R LK+K T L S ++H +CK+C++ +S
Sbjct: 105 --RHDLKIK-------DTDTLKSLTMDSH-----------------QYKDCKYCAKQGSS 138
Query: 674 EEWYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQH 847
+EWYP +KFK S+D + K ++ E N +PKKF N +L EVLP D+W+ + P Q
Sbjct: 139 KEWYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDCIQKDPEQE 198
Query: 848 ENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 1027
E+ + PNR +LSP Q + LL+ +D F+++FV R E IFLSC PV+PNC R++E H
Sbjct: 199 ES--FLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHRIMELTHL 256
Query: 1028 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 1207
S+G +L+ D+ TKA + ++D+ + +E H V +CL+VSKLH++K
Sbjct: 257 SSNGHQLAFDERTKAMKKLIDSKRHANELSLH--------------VRNCLSVSKLHTDK 302
Query: 1208 ASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVS 1387
+ D K + S GLKWIKE++L KR+D FRM +IGDPKI L EIG+PR V+
Sbjct: 303 SLKKD--TVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCEIGVPRMVA 360
Query: 1388 RTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLED 1567
L I E++N HN EKL + + HLI K RR+GKL+ + + +L++GD + R L+D
Sbjct: 361 ENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGDIVYRHLDD 420
Query: 1568 GDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRA 1747
GDI+++NR PSVH HSL+ALSVK+LP+ S VSINPLCC+PL GDFDGDCLHGF+ Q++
Sbjct: 421 GDIVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDC 480
Query: 1748 RVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKS 1927
RV N Q+G++LLSL+HDSL+AAHL+ + VF F+MQQL+ML P +
Sbjct: 481 RVELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQLKMLCPHQL 540
Query: 1928 QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2107
Q P I+KAPL++ P WTG+QLF M+LP + ++ SS V++ NG+L+ S G S R+
Sbjct: 541 QIPVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGESSWLRSRA 600
Query: 2108 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2287
+FS + + Y ++A ++LF+ Q+V CE+++M G SVSL D+Y+ SD ++R ++DEV
Sbjct: 601 GSIFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKNMLDEVRC 660
Query: 2288 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFA---RERRPISQASIAKF 2458
L+E K + +LM++PE+ +++ +D ++ + +E + Q S++ F
Sbjct: 661 GLQEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQESVVLCQVSVSSF 719
Query: 2459 KDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKL 2638
++ F D+QS++ Y S++NSL M+ AGSKG+L K ++ PL F IP KL
Sbjct: 720 REAFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLSFQIPCKL 779
Query: 2639 SCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSE 2818
SC WN K+ D S YAV+E SFLDGL+PLECFVH++S R N F E
Sbjct: 780 SCASWNYQKS-------HDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGE 832
Query: 2819 NAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGE 2998
NA+LPGTLTRK+MFYMRD+ +AYDGTVR AYG QLVQFSYG + S + D G
Sbjct: 833 NADLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQ--DPCGLFGGS 890
Query: 2999 DSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTA 3178
+A D +GG PVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLEC S ++TA
Sbjct: 891 PNAYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQTA 950
Query: 3179 SLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVL 3358
SL LS KL R GFEYGA VKNHL+RVFFSD+V++VM+ +S + M SPWV
Sbjct: 951 SLFLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQRHSQMSASPWVC 1007
Query: 3359 HFHVNKEMILRKRINVQSIVDALAGN----------YNCFREGR------------KLPR 3472
HFHV KEM+ R+ +N+QSI+DAL N N E R KLP
Sbjct: 1008 HFHVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLPN 1067
Query: 3473 LFMTSQSCVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIK 3652
L + S+ C ++++N CI V + + +Q LDT+RD V+P L +T+IK
Sbjct: 1068 LMILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQ-------LDTVRDLVVPFLSRTVIK 1120
Query: 3653 GFKEFKQVDILWDSQPK-------PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMID 3811
GF EFK VDILW+ P+ G+L+LK+ M E C KFW +LQ+ACLP+MD+ID
Sbjct: 1121 GFLEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLID 1180
Query: 3812 WERSRPDGVHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHG 3991
WERS PD +++I +GI + + YFL SLK A+SDIG+ + LEHLLLV++SLS TGEF G
Sbjct: 1181 WERSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLG 1240
Query: 3992 LSAKGIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGT 4171
LSAKGIK+Q S+SSPF QACFSNP CFI+AAK + D L G +D+V+WG++ P+GT
Sbjct: 1241 LSAKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGT 1300
Query: 4172 GGPFKIIYSGKVHSPKETENIYEILLKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNE 4351
GG F I+YSGK +P + NIY L H+S S G + G D+ +W +
Sbjct: 1301 GGHFDILYSGKGFTPAKPTNIYSALC---HESKSH--GENVETGL--TDACRKVCCKWEK 1353
Query: 4352 HNCTTKKE---KNVVFSSQPASV--RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSL 4516
+ K+ K + P+SV I S +++ ++SSL +LH+YP+N L+E DKS+
Sbjct: 1354 QSFYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILHKYPINDYLSEVDKSI 1413
Query: 4517 LMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQ 4696
L+ AL +HPK++ + H +SRCF+L+R DGT EDFSYRKC++ A +
Sbjct: 1414 LLRALYFHPKRNQKMGTGPKDIKVGYHSEHQQSRCFMLVRTDGTIEDFSYRKCILGALEK 1473
Query: 4697 ISPE 4708
I P+
Sbjct: 1474 ICPQ 1477
>ref|XP_019055892.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Nelumbo nucifera]
Length = 1493
Score = 1253 bits (3242), Expect = 0.0
Identities = 693/1569 (44%), Positives = 964/1569 (61%), Gaps = 46/1569 (2%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
M DD ++ VPS L G++F++LT EDIEK S I+ A+++ +LG PN SQC+TC
Sbjct: 1 MDDDVFIEQQVPSGFLKGIQFNVLTEEDIEKCSVTAIDAANEVTDPRLGFPNPLSQCSTC 60
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS 499
G ++ +C+GH G+IK + +P+ I E V ILN ICP C+S
Sbjct: 61 GGKNLKNCDGHIGIIKFAVNVLNPFFISETVQILNSICPGCRSV---------------- 104
Query: 500 IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 679
R LK+K T L S ++H +CK+C+ +S+E
Sbjct: 105 --RHDLKIK-------DTDTLKSLTMDSH-----------------QYKDCKYCAGSSKE 138
Query: 680 WYPAIKFKTLSRDTNGKKCVAITAEFN--VPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 853
WYP +KFK S+D + K ++ E N +PKKF N +L EVLP D+W+ + P Q E+
Sbjct: 139 WYPTMKFKVASKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDCIQKDPEQEES 198
Query: 854 SESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 1033
+ PNR +LSP Q + LL+ +D F+++FV R E IFLSC PV+PNC R++E H S
Sbjct: 199 --FLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHRIMELTHLSS 256
Query: 1034 DGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 1213
+G +L+ D+ TKA + ++D+ + +E H V +CL+VSKLH++K+
Sbjct: 257 NGHQLAFDERTKAMKKLIDSKRHANELSLH--------------VRNCLSVSKLHTDKSL 302
Query: 1214 TGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRT 1393
D K + S GLKWIKE++L KR+D FRM +IGDPKI L EIG+PR V+
Sbjct: 303 KKD--TVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCEIGVPRMVAEN 360
Query: 1394 LYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDGD 1573
L I E++N HN EKL + + HLI K RR+GKL+ + + +L++GD + R L+DGD
Sbjct: 361 LQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGDIVYRHLDDGD 420
Query: 1574 IIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARV 1753
I+++NR PSVH HSL+ALSVK+LP+ S VSINPLCC+PL GDFDGDCLHGF+ Q++ RV
Sbjct: 421 IVLINRPPSVHQHSLMALSVKVLPINSVVSINPLCCSPLSGDFDGDCLHGFIAQAIDCRV 480
Query: 1754 XXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQF 1933
N Q+G++LLSL+HDSL+AAHL+ + VF F+MQQL+ML P + Q
Sbjct: 481 ELRELVALSKQLVNGQNGQNLLSLSHDSLSAAHLVTQNGVFLDMFQMQQLKMLCPHQLQI 540
Query: 1934 PAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFISG 2113
P I+KAPL++ P WTG+QLF M+LP + ++ SS V++ NG+L+ S G S R+
Sbjct: 541 PVILKAPLLEAPLWTGKQLFDMLLPQSFDYVFPSSGVKISNGELLCSFGESSWLRSRAGS 600
Query: 2114 LFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSFAL 2293
+FS + + Y ++A ++LF+ Q+V CE+++M G SVSL D+Y+ SD ++R ++DEV L
Sbjct: 601 IFSVLVDHYQNRAIDFLFAAQDVFCEWISMGGFSVSLSDIYIASDSHSRKNMLDEVRCGL 660
Query: 2294 EEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFA---RERRPISQASIAKFKD 2464
+E K + +LM++PE+ +++ +D ++ + +E + Q S++ F++
Sbjct: 661 QEIKKKIYIKQLMVDPEMVHLLR-YDGENTKTNGYRVDQECPSNQESVVLCQVSVSSFRE 719
Query: 2465 LFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSC 2644
F D+QS++ Y S++NSL M+ AGSKG+L K ++ PL F IP KLSC
Sbjct: 720 AFHDIQSLIHQYASNDNSLLAMLKAGSKGNLLKIVQQGLCLGLQHASVPLSFQIPCKLSC 779
Query: 2645 PEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENA 2824
WN K+ D S YAV+E SFLDGL+PLECFVH++S R N F ENA
Sbjct: 780 ASWNYQKS-------HDIPACSISNIPYAVVENSFLDGLNPLECFVHSVSTRDNSFGENA 832
Query: 2825 ELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDS 3004
+LPGTLTRK+MFYMRD+ +AYDGTVR AYG QLVQFSYG + S + D G +
Sbjct: 833 DLPGTLTRKLMFYMRDLYIAYDGTVRTAYGNQLVQFSYGCFKGDSVQ--DPCGLFGGSPN 890
Query: 3005 ACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASL 3184
A D +GG PVGSL+ACSISEAAY ALD P++ LE SPLLNLKKVLEC S ++TASL
Sbjct: 891 AYDGVGGQPVGSLSACSISEAAYSALDQPISKLEISPLLNLKKVLECGQKNASADQTASL 950
Query: 3185 ALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHF 3364
LS KL R GFEYGA VKNHL+RVFFSD+V++VM+ +S + M SPWV HF
Sbjct: 951 FLSKKLGRWICGFEYGATEVKNHLERVFFSDVVSTVMVIFS---PQRHSQMSASPWVCHF 1007
Query: 3365 HVNKEMILRKRINVQSIVDALAGN----------YNCFREGR------------KLPRLF 3478
HV KEM+ R+ +N+QSI+DAL N N E R KLP L
Sbjct: 1008 HVCKEMMERRGLNIQSIIDALQRNSTGEQAKINLRNILNELRKKYKLSGKQVKIKLPNLM 1067
Query: 3479 MTSQSCVLGNEQKNLEELCISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGF 3658
+ S+ C ++++N CI V + + +Q LDT+RD V+P L +T+IKGF
Sbjct: 1068 ILSRDCTFIDQRENGRTFCIVVIVEITKDSSKQ-------LDTVRDLVVPFLSRTVIKGF 1120
Query: 3659 KEFKQVDILWDSQPK-------PDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWE 3817
EFK VDILW+ P+ G+L+LK+ M E C KFW +LQ+ACLP+MD+IDWE
Sbjct: 1121 LEFKSVDILWNDLPQSSKSHMFSSGELYLKVFMSEDCERTKFWSSLQNACLPVMDLIDWE 1180
Query: 3818 RSRPDGVHDISDVFGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLS 3997
RS PD +++I +GI + + YFL SLK A+SDIG+ + LEHLLLV++SLS TGEF GLS
Sbjct: 1181 RSYPDNIYNIVCAYGIDAGWKYFLRSLKFALSDIGKTVLLEHLLLVANSLSFTGEFLGLS 1240
Query: 3998 AKGIKQQRAHLSISSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGG 4177
AKGIK+Q S+SSPF QACFSNP CFI+AAK + D L G +D+V+WG++ P+GTGG
Sbjct: 1241 AKGIKRQMDQASVSSPFMQACFSNPGACFIKAAKEGAVDDLQGILDSVSWGKKVPIGTGG 1300
Query: 4178 PFKIIYSGKVHSPKETENIYEILLKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHN 4357
F I+YSGK +P + NIY L H+S S G + G D+ +W + +
Sbjct: 1301 HFDILYSGKGFTPAKPTNIYSALC---HESKSH--GENVETGL--TDACRKVCCKWEKQS 1353
Query: 4358 CTTKKE---KNVVFSSQPASV--RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLM 4522
K+ K + P+SV I S +++ ++SSL +LH+YP+N L+E DKS+L+
Sbjct: 1354 FYASKDPLPKGDSSENLPSSVLRSIYSREDVLKLNSSLKHILHKYPINDYLSEVDKSILL 1413
Query: 4523 EALMYHPKKD-------AXXXXXXXXXXXXHSPFHPKSRCFILIRNDGTTEDFSYRKCVI 4681
AL +HPK++ HS H +SRCF+L+R DGT EDFSYRKC++
Sbjct: 1414 RALYFHPKRNQKMGTGPKDIKVLPRIRVGYHSE-HQQSRCFMLVRTDGTIEDFSYRKCIL 1472
Query: 4682 EAANQISPE 4708
A +I P+
Sbjct: 1473 GALEKICPQ 1481
>ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1-like [Oryza brachyantha]
Length = 1472
Score = 1253 bits (3241), Expect = 0.0
Identities = 688/1562 (44%), Positives = 950/1562 (60%), Gaps = 37/1562 (2%)
Frame = +2
Query: 170 VPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 349
+P A+L+ +KF L+T D+EK S +I + D+ ++KLG+PN QC TCGS + DC+G
Sbjct: 16 MPVAELIAIKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQSVRDCDG 75
Query: 350 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKF 529
HFGVIKL +++PY I E+VH+LNQICP C +
Sbjct: 76 HFGVIKLAATVHNPYFIEEVVHLLNQICPGCLT--------------------------- 108
Query: 530 EKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 709
LK +G K+ + QA CK+CS++ + YP+I FK L
Sbjct: 109 ----------------------LKQNGDMKRADGITIQATCKYCSKDGAKLYPSIIFKML 146
Query: 710 S------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFWNFVPMLPSQH 847
+ R+T+ ++I AE V +N + E LP DFW+F+P ++
Sbjct: 147 TSPRVTLSRSKLHRNTSVIDKMSIIAEVASRVTHNSKNKA-PETLPHDFWDFIP---DEN 202
Query: 848 ENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHT 1027
+ S+S +I LSP Q F++L++LD E I PRREL+FLSC+PV+PNC RV E +
Sbjct: 203 QPSQSNVTKKI-LSPYQVFHMLKKLDPELISHVTPRRELLFLSCLPVTPNCHRVAEMPYG 261
Query: 1028 YSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNK 1207
+SDGPRL+ D TKAY+ +VD S++ID++ +H QFG A+S++ SRV +C+ SKL
Sbjct: 262 HSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVFASSVVTSRVMECMKSSKL---- 317
Query: 1208 ASTGDHSKYYSKQNDQPSST-----GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGL 1372
Y+K++D SST G KW+K+++LSKRSDN FR IM+GDPKI L EIG+
Sbjct: 318 ---------YAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMVGDPKISLNEIGI 368
Query: 1373 PRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLN 1552
P D++ L +SE V+ +N E + C LHL++K L RR GKLIF+ +++LQ+GD
Sbjct: 369 PMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVLLVRRNGKLIFVRKANKLQIGDIAY 428
Query: 1553 RSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVP 1732
R L+DGD+++VNR PSVH HSL+ALS K+LPV SAVSINPLCC P GDFDGDCLHG+VP
Sbjct: 429 RLLQDGDLVLVNRPPSVHQHSLVALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVP 488
Query: 1733 QSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEML 1912
QS+++RV N QDGRSL+SLTHDSL AAH L ++ K E QQL+ML
Sbjct: 489 QSIQSRVELEELVGLNRQLLNAQDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQML 548
Query: 1913 FPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPG 2080
C S P++IK+ Q P WTG+QLF ++LP M S ++ + + +++
Sbjct: 549 --CSSISSTPMPSVIKSANSQGPLWTGKQLFGLLLPSGMNISFDQNL-HIKDSEVLTCSS 605
Query: 2081 VSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTR 2260
S +N S LFS MF+ YG KA +L S Q+VLCE+LT+RGLSVSL D+YL SD Y+R
Sbjct: 606 GSLWLQNNTSSLFSVMFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSR 665
Query: 2261 NKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQ 2440
KL +EV AL+EA+ + +++L P +K +D +DLS++ S+F + I +
Sbjct: 666 RKLSEEVHLALDEAEEAFQIKQILLNPVSIPNLKYYDGADDLSNSYGQSDFTQASPSIIK 725
Query: 2441 ASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPF 2620
+SI FK +F DL +V +++S +NS+ M+ +GSKGS+ K A PF
Sbjct: 726 SSITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASKFPF 785
Query: 2621 SIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCR 2800
IP LSC WN+HK+ D + T S G++ YAVI SFLDGL+PLEC +HA+S R
Sbjct: 786 KIPSILSCVSWNRHKSLDYEI-TDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAISGR 844
Query: 2801 SNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHS 2980
+N FSENA++PGTLTRK+M+++RD +AYDGTVR++YGQQ+VQFSY + + E
Sbjct: 845 ANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQFSYDTSDGMYIE----- 899
Query: 2981 HFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRT 3160
H GE G PVGS AACSISEAAYGALDHPVN LE SPL+NL++VL+C
Sbjct: 900 HDIEGEP-------GTPVGSWAACSISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTN 952
Query: 3161 SVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMR 3340
SV+ T L LS L++ YGFEY +L VK+HL+RV FSD+V +VMI Y D + +KG
Sbjct: 953 SVDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKG-- 1010
Query: 3341 LSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQ 3514
+PWV HFH+N+E + KR+ + +V L YN R+ +P + + S C +GN
Sbjct: 1011 -NPWVTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRKQLNNTIPSVCILSSKCSVGNGC 1069
Query: 3515 KNLEELCIS-VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWD 3691
+ C++ V VES+ S + L I++ V+P +L TL+KGF EFK V +
Sbjct: 1070 VKNQACCVTMVVQVESN--------STSQLTIIKERVIPSILATLLKGFLEFKNVKV--- 1118
Query: 3692 SQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIIS 3871
Q + D +L +++ M E C KFW TLQ+AC+PIM++IDWERSRP+ ++D+ +GI S
Sbjct: 1119 -QCQQDSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSRPERLYDVFCSYGIDS 1177
Query: 3872 SYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFT 4051
++ +F+ SL+S IGRNI +HLL+V+D LSV+G+FHGLS++G+KQQR LSISSPF+
Sbjct: 1178 AWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQGLKQQRTSLSISSPFS 1237
Query: 4052 QACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETEN 4231
+ACFS P FI AAK S D L GT+DA+AWG+E GT GPFKI+YSGK H K+ EN
Sbjct: 1238 EACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFKILYSGKSHETKQKEN 1297
Query: 4232 IYEIL-----------LKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEK 4378
IY L L H ++ KW+ N TT
Sbjct: 1298 IYNFLHNPEIQAFEKNLMDTHRKRTE--KTSKWRS------------ALNSEGITTINGG 1343
Query: 4379 NVVFSSQPASVRIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAX 4558
++ + + ++G W+NI M + L ML +Y +N + E DKS L+EAL +HP+
Sbjct: 1344 SISVNQKFLGAKVGIWENIIDMRTCLQNMLREYTLNDIVTEQDKSCLIEALKFHPRGFDK 1403
Query: 4559 XXXXXXXXXXXHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELD 4738
+P HP SRCFI++RND TT DFSY KCV+ AAN +SPE G +EK L
Sbjct: 1404 IGAGIREIKIGVNPGHPNSRCFIVLRNDDTTADFSYNKCVLGAANSVSPELGSYIEKILS 1463
Query: 4739 PR 4744
R
Sbjct: 1464 NR 1465
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Brachypodium distachyon]
gb|KQK07373.1| hypothetical protein BRADI_2g34876v3 [Brachypodium distachyon]
gb|PNT71743.1| hypothetical protein BRADI_2g34876v3 [Brachypodium distachyon]
Length = 1470
Score = 1253 bits (3241), Expect = 0.0
Identities = 679/1541 (44%), Positives = 945/1541 (61%), Gaps = 16/1541 (1%)
Frame = +2
Query: 170 VPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 349
VP A+L LKFDLL+ DIE S NI +ASD+ S+KLG+PNA QC TCGS ++ DC+G
Sbjct: 14 VPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVRDCDG 73
Query: 350 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKF 529
H GVIKLP +Y PY + ++V LNQICP C +
Sbjct: 74 HSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTP-------------------------- 107
Query: 530 EKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 709
K + K+ Q CK+CS++ YP++ FK L
Sbjct: 108 -----------------------KQNRDTKRSDAATIQEPCKYCSKDG--LYPSVIFKVL 142
Query: 710 S------------RDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 853
+ R+T+ V++TAE V +N S EVLP D+WNFVP H
Sbjct: 143 TSPRITLSKSKLQRNTSVMDKVSVTAE--VINMSKNKSSLEVLPHDYWNFVP-----HNQ 195
Query: 854 SESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 1033
+ +I LSP Q F++L+++D E I +F PRREL+FLSC+PV+PN RV E + +S
Sbjct: 196 PPQPNTTKILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNRHRVAEMPYRFS 255
Query: 1034 DGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 1213
DGP L++D TKAY+ VDASKKID++ +H QF +A+S + SRV +CL SKL+S K
Sbjct: 256 DGPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLASSFVTSRVMECLQSSKLYSKKTD 315
Query: 1214 TGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDVSRT 1393
+ Y + S G KW+K+ +LSKRSD FR IM+GDPKI+L EIG+P D++
Sbjct: 316 KESSTDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFRSIMVGDPKIRLHEIGIPMDLA-D 374
Query: 1394 LYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLEDGD 1573
L++ EHV+ +N + + C LHL++K L ARR GKLI++ +QL++GD + R L+DGD
Sbjct: 375 LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKENQLEIGDIVYRPLQDGD 434
Query: 1574 IIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVRARV 1753
+I+VNR PSVH HSL+ALS K+LPV+S V+INPL CAPL GDFDGDCLHG+VPQS+ +RV
Sbjct: 435 LILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHGYVPQSIGSRV 494
Query: 1754 XXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLFPCKSQ- 1930
N+QDGRSL+SLTHDSL AAHLL V +K E QQL+ML S
Sbjct: 495 ELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNKTEFQQLQMLCVSLSPT 554
Query: 1931 -FPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSSRNFI 2107
P++IK+ Q P WTG+QLF M+LP M FS + + + +++ G SF +N
Sbjct: 555 PVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPKL-HIKDSEVLACSGGSFWLQNNT 613
Query: 2108 SGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLIDEVSF 2287
SGLFS +F+ YG +A +L S Q++LCE+LTMRGLSVSL D+YL SD Y+R K +EV+
Sbjct: 614 SGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVNL 673
Query: 2288 ALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAKFKDL 2467
AL+EA+ + +++L P +K +D+ +DLS + S+F + PI ++SI FK +
Sbjct: 674 ALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSYEQSDFVQSNLPIIKSSIMAFKSV 733
Query: 2468 FRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLKLSCP 2647
F DL +V + +NS+ M+ AGSKGS+ K A PF IP +L+C
Sbjct: 734 FSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGKFPFRIPSELTCA 793
Query: 2648 EWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFSENAE 2827
WN+HK+ D + + G+NS+AVI SF++GL+PLEC +H++S R+N FSENA+
Sbjct: 794 SWNRHKSLDCDIS-EGARKRLGGQNSHAVIRNSFIEGLNPLECLLHSISGRANFFSENAD 852
Query: 2828 LPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIGEDSA 3007
+PGTLT+ +M+++RDI VAYDGTVR++YGQQ+VQF+Y + E I D
Sbjct: 853 VPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDTAE------------DIYTDCG 900
Query: 3008 CDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRTASLA 3187
+ G PVGS AACSISEAAYGALDHPVN +E SPL+NL++VL+C S++ L
Sbjct: 901 QEGEFGAPVGSWAACSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLF 960
Query: 3188 LSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWVLHFH 3367
LS LK+ YGFEY +L V+N+L+ + FS++V +VMI Y + TKG SPW+ HFH
Sbjct: 961 LSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKG---SPWITHFH 1017
Query: 3368 VNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCVLGNEQKNLEELCIS 3541
++KEM+ RKR+ ++ +V+ L +YN R+ +P+++++ C ++ N + CI+
Sbjct: 1018 ISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNVIPKVYISKCKCSDDDDCINNQTCCIT 1077
Query: 3542 VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQLF 3721
V A + E + S + LD ++ +PVLL T +KGF EFK V+I Q + D +L
Sbjct: 1078 VVAQD-----ESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEI----QCQRDNELV 1128
Query: 3722 LKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLGSLK 3901
+K+ M + C FW TL+ AC+ IM +IDWERSRP V+DI GI S++ YF+ SL+
Sbjct: 1129 VKVNMSKHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDSAWKYFVESLR 1188
Query: 3902 SAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNPEKC 4081
S DIGRNIH EHLL+V+D+LSV+G+FHGLS++G+KQQR LS SSPF++ACFS P
Sbjct: 1189 SKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFSEACFSRPADT 1248
Query: 4082 FIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLKQKH 4261
FI+AAK S D+L G +DA+AWG+E P GT GPFKI+Y+GK H P + ENIY L
Sbjct: 1249 FIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNENIYGFL----- 1303
Query: 4262 DSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWDNISA 4441
+ ++ G +K + + RW+ N T + ++G WD+I
Sbjct: 1304 -HNPEVWGPEKNHMETDSTRTKNASERWSSGNATF-NGGTISVEQNYLGAKVGVWDSIID 1361
Query: 4442 MSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPKSRC 4621
M + L ML +Y ++ + E DKS ++EAL +HP+ P HP +RC
Sbjct: 1362 MRTCLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQHPSHPGTRC 1421
Query: 4622 FILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPR 4744
FIL+RND TTED SY+KCV AA+ ISP+ G +EK L R
Sbjct: 1422 FILVRNDDTTEDVSYKKCVQGAADSISPQLGSHMEKILQTR 1462
>ref|XP_020165521.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Aegilops
tauschii subsp. tauschii]
ref|XP_020165522.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Aegilops
tauschii subsp. tauschii]
ref|XP_020165523.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Aegilops
tauschii subsp. tauschii]
Length = 1425
Score = 1252 bits (3239), Expect = 0.0
Identities = 684/1544 (44%), Positives = 948/1544 (61%), Gaps = 19/1544 (1%)
Frame = +2
Query: 170 VPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 349
+P+ +L G+ F L+T ++EK S +I + SD+ S+KLG+PN QC TCG+ + +C+G
Sbjct: 10 MPTGELKGITFYLMTNTEMEKSSSASIVEPSDVSSAKLGLPNGAPQCETCGAQSVRECDG 69
Query: 350 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKF 529
H GVIKLP +++P+L E+V +LNQICP C +
Sbjct: 70 HSGVIKLPATVFNPHLFEEVVQLLNQICPGCHTP-------------------------- 103
Query: 530 EKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 709
K + K+ +QA CK+CS++ + YP + FKTL
Sbjct: 104 -----------------------KQNRDSKRSDGATSQATCKYCSKDGTKQYPDVIFKTL 140
Query: 710 S------------RDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 853
+ RD N +++TAE V + + + EVLP D+W+FVP H +
Sbjct: 141 TSPRITLSKAKLLRDHNVMDKISLTAE--VADRVTDSA--EVLPLDYWDFVP-----HHH 191
Query: 854 SESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 1033
+ +I LSP Q ++L +LD + +F R ELIFLSC+PV+PN RV E + +S
Sbjct: 192 PPQSNMTKILLSPYQVSHILEQLDPKLFSRFASRPELIFLSCLPVTPNFHRVAELPYGFS 251
Query: 1034 DGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 1213
DGPRL++D TKAY+ VD +K+D+ +H QF +A+SL+ SRV +CL +SKLHS
Sbjct: 252 DGPRLAYDDLTKAYKRTVDVGRKLDDLRQHPQFSVLASSLVTSRVVECLKLSKLHS---- 307
Query: 1214 TGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDV 1384
K+ D+ SST G+KW+K+ +LSKRSDN FR M+GDPKI+L EIG+P D+
Sbjct: 308 ---------KKTDKESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDL 358
Query: 1385 SRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLE 1564
+ L +SEHVN++N + + C +L++ +L +R GK I + +QL +GDT++R L+
Sbjct: 359 ASNLVVSEHVNSYNFDNINLKCNCYLLANEKLVIKRSGKTIIVRKPNQLVIGDTVHRLLQ 418
Query: 1565 DGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVR 1744
DGD+I++NR PS+H HSL+ LS K+LPV+S +SINPLCCAPL GDFDGDCLHG+VPQS++
Sbjct: 419 DGDLILINRPPSIHQHSLIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQ 478
Query: 1745 ARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLF--- 1915
+RV N QDGRSL+SLTHDSL AA+LL EV K E+QQ +ML
Sbjct: 479 SRVELGELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHP 538
Query: 1916 PCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSS 2095
+ PAI+K+ P WTG+QLFSM+LP +M FS V + +G+++ P SF
Sbjct: 539 LSPTPGPAIMKSIHSHGPLWTGKQLFSMLLPSDMSFSIEPK-VHIVDGEVLACPSESFWL 597
Query: 2096 RNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLID 2275
+N ISGLFS MF+ YG KA L S Q+VLCE+LTMRGLSVSL D+YL D +R KL D
Sbjct: 598 QNSISGLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLAD 657
Query: 2276 EVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAK 2455
V+ AL++A+ + +++L P+ I+K +D+ DLS + SNF + PI ++SI
Sbjct: 658 GVNLALDDAEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMA 717
Query: 2456 FKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLK 2635
FK +F DLQ +V + + NS+ M AGSKGS+ K A PF IP +
Sbjct: 718 FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSE 777
Query: 2636 LSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFS 2815
LSC WN+HK+ + T G+N YAVI SF GL+PLEC +H++S R+N FS
Sbjct: 778 LSCASWNRHKS-------EGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFFS 830
Query: 2816 ENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIG 2995
ENA++PGTLTRK+M+++RD+ VAYDGTVR++YGQQ++QF+Y + E +
Sbjct: 831 ENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAE------------DMC 878
Query: 2996 EDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRT 3175
D + G PVGS AACSISEAAYGALDHPVNSLE SPL+NL+ VL+C TS++
Sbjct: 879 SDRNVEGELGAPVGSWAACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHV 938
Query: 3176 ASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWV 3355
L LS LK+ YG EY +L VK+HL+ V FSD+V +VMI Y + TKG SPW+
Sbjct: 939 GLLFLSKNLKKYRYGLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKG---SPWI 995
Query: 3356 LHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCVLGNEQKNLEELC 3535
HFH+++EM+ +KR+ + +V+ L YN R+ P+++++ C +E N + C
Sbjct: 996 THFHLSQEMMTKKRLGLTLVVEELTEQYNAKRDKLNFPKVYISKGKCSADHECGNRQTCC 1055
Query: 3536 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 3715
I+V + D S + LDTI+ V+P LL L+KGF EFK+V+I Q + D +
Sbjct: 1056 ITVVT-------QDDSNSMSQLDTIKKRVIPNLLALLVKGFLEFKKVEI----QCQEDSE 1104
Query: 3716 LFLKIIM-EESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLG 3892
L +K++M EE C KFW TLQ +C+ IM++IDWERSRP V+DI +GI S++ YF+
Sbjct: 1105 LVVKVVMSEEHCKSVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYFVE 1164
Query: 3893 SLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNP 4072
SL+S DIGRNI EHLL+V++ LSV+G+FHGLS++G+KQQR LSISSPF++ACFS P
Sbjct: 1165 SLRSKTDDIGRNIRREHLLVVANCLSVSGQFHGLSSQGLKQQRTRLSISSPFSEACFSRP 1224
Query: 4073 EKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLK 4252
FI AAK SS D+L GTVDA+AWG+E GT GPFKIIYSGK H+P ENIY+ L
Sbjct: 1225 AHTFINAAKQSSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGKAHAPIPNENIYDFL-- 1282
Query: 4253 QKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWDN 4432
+S ++ W+ PG GS T E++ + ++ +G WDN
Sbjct: 1283 ----NSPEV-----WQA-PGEAFLNGS---------TISVEQDFLVAT------VGIWDN 1317
Query: 4433 ISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPK 4612
I M + L ML +Y +N + E DKS ++EAL +HP+ H P HP
Sbjct: 1318 IIDMRTCLQNMLREYQLNECVVELDKSRVIEALRFHPRGREKIGAGIKDIKIGHHPSHPG 1377
Query: 4613 SRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPR 4744
+RCFI++R+DGTTEDFSY+KCV AA+ ISPE G VE+ L R
Sbjct: 1378 TRCFIMVRDDGTTEDFSYKKCVQAAADSISPELGRYVERILRNR 1421
>ref|XP_020165520.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Aegilops
tauschii subsp. tauschii]
Length = 1431
Score = 1252 bits (3239), Expect = 0.0
Identities = 684/1544 (44%), Positives = 948/1544 (61%), Gaps = 19/1544 (1%)
Frame = +2
Query: 170 VPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTCGSTHIGDCEG 349
+P+ +L G+ F L+T ++EK S +I + SD+ S+KLG+PN QC TCG+ + +C+G
Sbjct: 16 MPTGELKGITFYLMTNTEMEKSSSASIVEPSDVSSAKLGLPNGAPQCETCGAQSVRECDG 75
Query: 350 HFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISSIKRLLLKMKF 529
H GVIKLP +++P+L E+V +LNQICP C +
Sbjct: 76 HSGVIKLPATVFNPHLFEEVVQLLNQICPGCHTP-------------------------- 109
Query: 530 EKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEEWYPAIKFKTL 709
K + K+ +QA CK+CS++ + YP + FKTL
Sbjct: 110 -----------------------KQNRDSKRSDGATSQATCKYCSKDGTKQYPDVIFKTL 146
Query: 710 S------------RDTNGKKCVAITAEFNVPKKFENMSLSEVLPKDFWNFVPMLPSQHEN 853
+ RD N +++TAE V + + + EVLP D+W+FVP H +
Sbjct: 147 TSPRITLSKAKLLRDHNVMDKISLTAE--VADRVTDSA--EVLPLDYWDFVP-----HHH 197
Query: 854 SESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPNCQRVVETIHTYS 1033
+ +I LSP Q ++L +LD + +F R ELIFLSC+PV+PN RV E + +S
Sbjct: 198 PPQSNMTKILLSPYQVSHILEQLDPKLFSRFASRPELIFLSCLPVTPNFHRVAELPYGFS 257
Query: 1034 DGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNVSKLHSNKAS 1213
DGPRL++D TKAY+ VD +K+D+ +H QF +A+SL+ SRV +CL +SKLHS
Sbjct: 258 DGPRLAYDDLTKAYKRTVDVGRKLDDLRQHPQFSVLASSLVTSRVVECLKLSKLHS---- 313
Query: 1214 TGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDNTFRMIMIGDPKIQLGEIGLPRDV 1384
K+ D+ SST G+KW+K+ +LSKRSDN FR M+GDPKI+L EIG+P D+
Sbjct: 314 ---------KKTDKESSTDTHGMKWLKDAILSKRSDNAFRGTMVGDPKIRLHEIGIPVDL 364
Query: 1385 SRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQVGDTLNRSLE 1564
+ L +SEHVN++N + + C +L++ +L +R GK I + +QL +GDT++R L+
Sbjct: 365 ASNLVVSEHVNSYNFDNINLKCNCYLLANEKLVIKRSGKTIIVRKPNQLVIGDTVHRLLQ 424
Query: 1565 DGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCLHGFVPQSVR 1744
DGD+I++NR PS+H HSL+ LS K+LPV+S +SINPLCCAPL GDFDGDCLHG+VPQS++
Sbjct: 425 DGDLILINRPPSIHQHSLIGLSAKLLPVQSVLSINPLCCAPLAGDFDGDCLHGYVPQSIQ 484
Query: 1745 ARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQQLEMLF--- 1915
+RV N QDGRSL+SLTHDSL AA+LL EV K E+QQ +ML
Sbjct: 485 SRVELGELVSLSHQLLNAQDGRSLVSLTHDSLAAAYLLTSSEVLLKKTEVQQFQMLLCHP 544
Query: 1916 PCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSPGVSFSS 2095
+ PAI+K+ P WTG+QLFSM+LP +M FS V + +G+++ P SF
Sbjct: 545 LSPTPGPAIMKSIHSHGPLWTGKQLFSMLLPSDMSFSIEPK-VHIVDGEVLACPSESFWL 603
Query: 2096 RNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYTRNKLID 2275
+N ISGLFS MF+ YG KA L S Q+VLCE+LTMRGLSVSL D+YL D +R KL D
Sbjct: 604 QNSISGLFSVMFKQYGDKALELLSSAQDVLCEFLTMRGLSVSLSDIYLFPDHDSRRKLAD 663
Query: 2276 EVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPISQASIAK 2455
V+ AL++A+ + +++L P+ I+K +D+ DLS + SNF + PI ++SI
Sbjct: 664 GVNLALDDAEEAFRIKQILLSPDSIPILKCYDDCADLSQSYEQSNFIQSNLPIIKSSIMA 723
Query: 2456 FKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLPFSIPLK 2635
FK +F DLQ +V + + NS+ M AGSKGS+ K A PF IP +
Sbjct: 724 FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASRFPFRIPSE 783
Query: 2636 LSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVHALSCRSNMFS 2815
LSC WN+HK+ + T G+N YAVI SF GL+PLEC +H++S R+N FS
Sbjct: 784 LSCASWNRHKS-------EGTGECLGGQNLYAVIRNSFAGGLNPLECLLHSISGRANFFS 836
Query: 2816 ENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCEDCDHSHFSIG 2995
ENA++PGTLTRK+M+++RD+ VAYDGTVR++YGQQ++QF+Y + E +
Sbjct: 837 ENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQFTYDTAE------------DMC 884
Query: 2996 EDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLECAPTRTSVNRT 3175
D + G PVGS AACSISEAAYGALDHPVNSLE SPL+NL+ VL+C TS++
Sbjct: 885 SDRNVEGELGAPVGSWAACSISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHV 944
Query: 3176 ASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKGTKGMRLSPWV 3355
L LS LK+ YG EY +L VK+HL+ V FSD+V +VMI Y + TKG SPW+
Sbjct: 945 GLLFLSKNLKKYRYGLEYASLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKG---SPWI 1001
Query: 3356 LHFHVNKEMILRKRINVQSIVDALAGNYNCFREGRKLPRLFMTSQSCVLGNEQKNLEELC 3535
HFH+++EM+ +KR+ + +V+ L YN R+ P+++++ C +E N + C
Sbjct: 1002 THFHLSQEMMTKKRLGLTLVVEELTEQYNAKRDKLNFPKVYISKGKCSADHECGNRQTCC 1061
Query: 3536 ISVGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQVDILWDSQPKPDGQ 3715
I+V + D S + LDTI+ V+P LL L+KGF EFK+V+I Q + D +
Sbjct: 1062 ITVVT-------QDDSNSMSQLDTIKKRVIPNLLALLVKGFLEFKKVEI----QCQEDSE 1110
Query: 3716 LFLKIIM-EESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDVFGIISSYSYFLG 3892
L +K++M EE C KFW TLQ +C+ IM++IDWERSRP V+DI +GI S++ YF+
Sbjct: 1111 LVVKVVMSEEHCKSVKFWATLQKSCIAIMELIDWERSRPGSVYDIFCSYGIDSAWKYFVE 1170
Query: 3893 SLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSISSPFTQACFSNP 4072
SL+S DIGRNI EHLL+V++ LSV+G+FHGLS++G+KQQR LSISSPF++ACFS P
Sbjct: 1171 SLRSKTDDIGRNIRREHLLVVANCLSVSGQFHGLSSQGLKQQRTRLSISSPFSEACFSRP 1230
Query: 4073 EKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSPKETENIYEILLK 4252
FI AAK SS D+L GTVDA+AWG+E GT GPFKIIYSGK H+P ENIY+ L
Sbjct: 1231 AHTFINAAKQSSVDNLCGTVDAMAWGKEPSTGTSGPFKIIYSGKAHAPIPNENIYDFL-- 1288
Query: 4253 QKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSSQPASVRIGSWDN 4432
+S ++ W+ PG GS T E++ + ++ +G WDN
Sbjct: 1289 ----NSPEV-----WQA-PGEAFLNGS---------TISVEQDFLVAT------VGIWDN 1323
Query: 4433 ISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDAXXXXXXXXXXXXHSPFHPK 4612
I M + L ML +Y +N + E DKS ++EAL +HP+ H P HP
Sbjct: 1324 IIDMRTCLQNMLREYQLNECVVELDKSRVIEALRFHPRGREKIGAGIKDIKIGHHPSHPG 1383
Query: 4613 SRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKELDPR 4744
+RCFI++R+DGTTEDFSY+KCV AA+ ISPE G VE+ L R
Sbjct: 1384 TRCFIMVRDDGTTEDFSYKKCVQAAADSISPELGRYVERILRNR 1427
>ref|XP_015696685.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1476
Score = 1251 bits (3238), Expect = 0.0
Identities = 692/1560 (44%), Positives = 963/1560 (61%), Gaps = 28/1560 (1%)
Frame = +2
Query: 140 MADDSITDKMVPSAQLLGLKFDLLTGEDIEKFSHVNINDASDLVSSKLGVPNACSQCTTC 319
M + S+ KM P A+L +KF L+T D+EKFS V+I + D+ ++KLG+PN QC TC
Sbjct: 8 MEELSLEVKM-PEAKLNAIKFSLMTSSDMEKFSSVSIIEMRDVTNAKLGLPNGAPQCATC 66
Query: 320 GSTHIGDCEGHFGVIKLPTAIYHPYLIYEIVHILNQICPACKSXXXXXXXXXXXXXTISS 499
G +I DC+GHFGVIKL +++PY I E+V +LNQICP C
Sbjct: 67 GFRNIRDCDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGC------------------- 107
Query: 500 IKRLLLKMKFEKITMPQTQNLLSRVANAHVKHLKFSGSEKKWGTVDNQAECKHCSRNSEE 679
+T+ Q N K K G+ T+ QA CK+CS++ +
Sbjct: 108 ------------LTLKQ---------NGETKLKKGDGT-----TI--QATCKYCSKDGAK 139
Query: 680 WYPAIKFKTLS------------RDTNGKKCVAITAEF--NVPKKFENMSLSEVLPKDFW 817
YP+I FK L+ R+T+ ++I AE V K +N E+LP+DFW
Sbjct: 140 LYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVASRVTHKSKNKVPHEILPQDFW 199
Query: 818 NFVPMLPSQHENSESMDPNRITLSPVQAFYLLRELDKEFIEQFVPRRELIFLSCIPVSPN 997
+F LP ++ +S +I LSP Q F++L+++D E I Q PRREL+FLSC+PV+PN
Sbjct: 200 DF---LPDDNQPPQSNVTKKI-LSPYQVFHMLKKIDPELINQVTPRRELLFLSCLPVTPN 255
Query: 998 CQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDC 1177
C RVVE + +SDGPRL+ D TKAY+ +VD S++ID++ +H QFG A+S + SRV +C
Sbjct: 256 CHRVVEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVYASSAVTSRVMEC 315
Query: 1178 LNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQL 1357
L SKL+S K+ + + + G KW+K+++LSKRSDN FR +M+GDPKI L
Sbjct: 316 LKSSKLYSRKSD--------GESSTSTDTYGTKWLKDIILSKRSDNAFRSVMVGDPKINL 367
Query: 1358 GEIGLPRDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRQGKLIFIHSSDQLQV 1537
EIG+P D++ L +SE V+++N E + C LHL++K L RR G+LIFI +++L++
Sbjct: 368 NEIGMPMDLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGRLIFIRKANKLEI 427
Query: 1538 GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 1717
GD R L+DGD+I+VNR PSVH HSL+ALS KIL SAVSINPLCC P GDFDGDCL
Sbjct: 428 GDIAYRPLQDGDLILVNRPPSVHQHSLIALSAKILSSHSAVSINPLCCGPFQGDFDGDCL 487
Query: 1718 HGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 1897
HG+VPQS+++RV N QDGRSL+SLTHDSLTAAH L +VF K E Q
Sbjct: 488 HGYVPQSLQSRVELDELVGLSGQLLNAQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQ 547
Query: 1898 QLEMLFPCKSQ--FPAIIKAPLVQMPRWTGRQLFSMMLP--LNMEFSSRSSIVEVCNGDL 2065
QL+ML S P+I+K+ Q P WTG+QLF M++P +N+ F + + + + ++
Sbjct: 548 QLQMLCSSVSSTPMPSILKSSKSQGPLWTGKQLFGMLIPSGMNINFDEK---LHIKDSEV 604
Query: 2066 VPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 2245
+ SF +N S LFS MFE YG KA +L S Q+VLCE+LTMRGLSVSL D YL S
Sbjct: 605 LAFSSGSFWLQNNTSSLFSVMFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLS 664
Query: 2246 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 2425
D Y+R KLI+EV AL+EA+ + +++L P +K +D +DL ++ S++ +
Sbjct: 665 DHYSRRKLIEEVHLALDEAEEAFQIKQILLNPVSIPYLKYYDGADDLLNSYEQSDYTQVS 724
Query: 2426 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSA 2605
PI Q+SI FK +F DL +V + S +NS+ M+ +GSKGS+ K A
Sbjct: 725 LPIIQSSITSFKSVFNDLLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQLPA 784
Query: 2606 KPLPFSIPLKLSCPEWNQHKAFDRSLGMQDTSNSSEGENSYAVIEASFLDGLSPLECFVH 2785
PF IP +LSC WN+HK+ + + TS G+N YAVI SFLDGL+PLEC +H
Sbjct: 785 SIFPFRIPSELSCVSWNRHKSLNCEM-TDGTSERMGGQNIYAVIRNSFLDGLNPLECLLH 843
Query: 2786 ALSCRSNMFSENAELPGTLTRKIMFYMRDISVAYDGTVRNAYGQQLVQFSYGSPEKKSCE 2965
A+S R+N FSENA++PGTLTRK+M+++RD VAYDGTVR++YGQQ+VQFSY + +
Sbjct: 844 AISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQFSYNTAD----- 898
Query: 2966 DCDHSHFSIGEDSACDRLGGHPVGSLAACSISEAAYGALDHPVNSLESSPLLNLKKVLEC 3145
+ D + G PVGS AACSISEAAYGALDHPVN+LE SPL+NL++VL+C
Sbjct: 899 -------GMFRDHDLEGEPGAPVGSWAACSISEAAYGALDHPVNALEDSPLMNLQEVLKC 951
Query: 3146 APTRTSVNRTASLALSNKLKRLNYGFEYGALAVKNHLDRVFFSDIVTSVMIFYSAHDAKG 3325
+ SV+ T L LS L++ YGFEY +L VK+HL+RV FSD+V +VMI Y D +
Sbjct: 952 RKSTKSVDHTGLLFLSKHLRKYRYGFEYASLQVKDHLERVDFSDLVDAVMILYGGSDMQK 1011
Query: 3326 TKGMRLSPWVLHFHVNKEMILRKRINVQSIVDALAGNYNCFRE--GRKLPRLFMTSQSCV 3499
T+G +PW+ HFH+++E + KR+ + IV L YN R+ +P + +++ +C
Sbjct: 1012 TQG---NPWITHFHLSQETMKIKRLRLGFIVRELIEQYNALRKQSNNTIPSVCISNSNCS 1068
Query: 3500 LGNEQKNLEELCIS-VGAVESSERKEQDEPSPTLLDTIRDSVMPVLLQTLIKGFKEFKQV 3676
+GNE CI+ V VES+ S + L+ I++ V+P +L+TL+KGF EFK V
Sbjct: 1069 VGNECVKNCTCCITMVAQVESN--------STSQLNIIKERVIPSILETLLKGFLEFKNV 1120
Query: 3677 DILWDSQPKPDGQLFLKIIMEESCPPRKFWRTLQSACLPIMDMIDWERSRPDGVHDISDV 3856
+ + + D +L +K+ M E C KFW LQ+AC+PIM++IDWERS+P+ V+DI
Sbjct: 1121 KV----EYQQDSELVVKVGMSEHCKSGKFWAALQNACIPIMELIDWERSQPERVNDIFCS 1176
Query: 3857 FGIISSYSYFLGSLKSAVSDIGRNIHLEHLLLVSDSLSVTGEFHGLSAKGIKQQRAHLSI 4036
+GI S++ +F+ SL+S IGRNI +HLL+V+D LSV+G+FHGL+++G+K QR LSI
Sbjct: 1177 YGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKHQRTSLSI 1236
Query: 4037 SSPFTQACFSNPEKCFIEAAKHSSTDHLYGTVDAVAWGQEAPVGTGGPFKIIYSGKVHSP 4216
SSPF++ACFS P FI AAK S D+L GT+DA+AWG+E VGT GPFKI+YSGK
Sbjct: 1237 SSPFSEACFSRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILYSGKSLET 1296
Query: 4217 KETENIYEILLKQKHDSSSQIPGADKWKGQPGVDSAGGSMRRWNEHNCTTKKEKNVVFSS 4396
K+ ENIY+ L + + +K +D+ + ++ + K E N +
Sbjct: 1297 KQNENIYDFL------HNPDVQAIEK----SFMDTYRQRTEKTSKQRSSFKSEDNGTITG 1346
Query: 4397 QPASV-------RIGSWDNISAMSSSLSRMLHQYPVNHQLNEADKSLLMEALMYHPKKDA 4555
SV ++G W+NI M + L ML +Y +N + E DKS L EAL +HP+
Sbjct: 1347 GAISVIQEFLDAKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKSCLKEALKFHPRGYD 1406
Query: 4556 XXXXXXXXXXXXHSPFHPKSRCFILIRNDGTTEDFSYRKCVIEAANQISPEFGLMVEKEL 4735
+P HP RCFI++RND TT DFSY KCV+ AAN + PE G +EK L
Sbjct: 1407 KIGVGIREIKIGVNPGHPNLRCFIVLRNDDTTADFSYNKCVLGAANSLKPELGSHMEKIL 1466