BLASTX nr result
ID: Ophiopogon27_contig00015003
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00015003
(597 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKU79029.1| Cleavage and polyadenylation specificity factor s... 72 5e-11
ref|XP_020700357.1| cleavage and polyadenylation specificity fac... 72 5e-11
ref|XP_020083140.1| cleavage and polyadenylation specificity fac... 71 7e-11
ref|XP_020592154.1| cleavage and polyadenylation specificity fac... 69 4e-10
ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation spec... 68 7e-10
gb|PIN21736.1| putative cleavage and polyadenylation specificity... 64 2e-08
ref|XP_006828470.1| cleavage and polyadenylation specificity fac... 64 2e-08
ref|XP_011463169.1| PREDICTED: cleavage and polyadenylation spec... 63 5e-08
gb|PKA52369.1| Cleavage and polyadenylation specificity factor s... 62 1e-07
ref|XP_023922515.1| cleavage and polyadenylation specificity fac... 61 2e-07
gb|OVA12168.1| Beta-lactamase-like [Macleaya cordata] 61 2e-07
ref|XP_022155358.1| cleavage and polyadenylation specificity fac... 58 3e-06
gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis] 57 3e-06
emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera] 57 4e-06
ref|XP_023731342.1| cleavage and polyadenylation specificity fac... 57 4e-06
ref|XP_010107067.2| cleavage and polyadenylation specificity fac... 57 4e-06
gb|PLY75759.1| hypothetical protein LSAT_3X53521 [Lactuca sativa] 57 5e-06
ref|XP_010271360.1| PREDICTED: cleavage and polyadenylation spec... 57 5e-06
gb|OIT20683.1| cleavage and polyadenylation specificity factor s... 57 6e-06
ref|XP_022887411.1| cleavage and polyadenylation specificity fac... 57 6e-06
>gb|PKU79029.1| Cleavage and polyadenylation specificity factor subunit 3-II
[Dendrobium catenatum]
Length = 672
Score = 71.6 bits (174), Expect = 5e-11
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKK-DSAIRSTVFFCCCWSFSDEALARK 178
+IDC +I+ T D +L S Q +IC N C YR ++ S ++ FFCC WS SD+ LARK
Sbjct: 584 KIDCCNIQKTFDHLRLKSFQARICLNDLCSYRIQQGQSDCKTETFFCCSWSLSDDILARK 643
Query: 179 VLSIMSMLELD 211
+L IM +ELD
Sbjct: 644 LLGIMREVELD 654
>ref|XP_020700357.1| cleavage and polyadenylation specificity factor subunit 3-II
[Dendrobium catenatum]
Length = 707
Score = 71.6 bits (174), Expect = 5e-11
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKK-DSAIRSTVFFCCCWSFSDEALARK 178
+IDC +I+ T D +L S Q +IC N C YR ++ S ++ FFCC WS SD+ LARK
Sbjct: 619 KIDCCNIQKTFDHLRLKSFQARICLNDLCSYRIQQGQSDCKTETFFCCSWSLSDDILARK 678
Query: 179 VLSIMSMLELD 211
+L IM +ELD
Sbjct: 679 LLGIMREVELD 689
>ref|XP_020083140.1| cleavage and polyadenylation specificity factor subunit 3-II
[Ananas comosus]
Length = 691
Score = 71.2 bits (173), Expect = 7e-11
Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 IDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTV-FFCCCWSFSDEALARKV 181
+ C +I S SD QL+SL+++ICSN CP+RT ++ S+V +FCC WS DE LA K
Sbjct: 605 VKCKYIESFSDHLQLDSLRIRICSNEDCPFRTNQNKYCSSSVIYFCCSWSMHDENLASKC 664
Query: 182 LSIMSMLE 205
L I++ L+
Sbjct: 665 LEIVNNLD 672
>ref|XP_020592154.1| cleavage and polyadenylation specificity factor subunit 3-II
[Phalaenopsis equestris]
Length = 653
Score = 68.9 bits (167), Expect = 4e-10
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSA-IRSTVFFCCCWSFSDEALARK 178
+I+CS ++ + QL S Q +IC N+ C YR +++ ++ FFCC WSF D+ LARK
Sbjct: 570 KINCSFLQKDLEHLQLKSFQSRICLNKLCSYRIEQEGRDCKTETFFCCSWSFRDDNLARK 629
Query: 179 VLSIMSMLELD 211
+L++M +ELD
Sbjct: 630 ILNVMREVELD 640
>ref|XP_009391419.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Musa acuminata subsp. malaccensis]
Length = 663
Score = 68.2 bits (165), Expect = 7e-10
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +2
Query: 8 DCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLS 187
+C I+ SD QL++ V +CSN C YR K++ S V+FCC WS D+ LAR++L
Sbjct: 595 ECKDIQIASDSLQLHTFHVCVCSNEHCSYRKKENGVGESVVYFCCSWSPCDDRLARELLQ 654
Query: 188 IMSMLEL 208
IM L L
Sbjct: 655 IMGQLAL 661
>gb|PIN21736.1| putative cleavage and polyadenylation specificity factor (CPSF
subunit) [Handroanthus impetiginosus]
Length = 625
Score = 64.3 bits (155), Expect = 2e-08
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 17 HIRSTSDQFQLNSLQVQICSNRQCPYRTKKD-SAIRSTVFFCCCWSFSDEALARKVLSIM 193
HI ++ + Q+ SL + +CS +CP+RT ++ TV FCC WS +DE LAR+V+S++
Sbjct: 558 HIHNSQEHIQIRSLILSLCSKEECPHRTSLSLHSVPHTVHFCCTWSLADEELARRVISVI 617
Query: 194 SMLEL 208
+ L+L
Sbjct: 618 NNLDL 622
>ref|XP_006828470.1| cleavage and polyadenylation specificity factor subunit 3-II
[Amborella trichopoda]
gb|ERM95886.1| hypothetical protein AMTR_s00060p00141700 [Amborella trichopoda]
Length = 716
Score = 64.3 bits (155), Expect = 2e-08
Identities = 27/55 (49%), Positives = 36/55 (65%)
Frame = +2
Query: 44 QLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLSIMSMLEL 208
QLNS+ + +C N CPYRT+ +FFCC WS+ DE LAR+V+S M L+L
Sbjct: 659 QLNSMCIHVCGNEDCPYRTEPAKEYDRALFFCCSWSWVDEKLARRVVSFMKDLDL 713
>ref|XP_011463169.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Fragaria vesca subsp. vesca]
Length = 636
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSA--IRSTVFFCCCWSFSDEALAR 175
E+ +I+ D QL S+ V ICSN CPYR + A R VFFCC W DE LA
Sbjct: 564 ELSEGNIQHFGDHLQLESIHVSICSNNDCPYRLSDNGAEEQREPVFFCCSWEMEDEKLAW 623
Query: 176 KVLSI 190
KV+SI
Sbjct: 624 KVISI 628
>gb|PKA52369.1| Cleavage and polyadenylation specificity factor subunit 3-II
[Apostasia shenzhenica]
Length = 540
Score = 61.6 bits (148), Expect = 1e-07
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTK-KDSAIRSTVFFCCCWSFSDEALARK 178
+ID +I ++ +++S + ++C N CPYR K +D + +F CC WS +D+ LARK
Sbjct: 463 DIDGRYINKACERLEVDSFRARMCLNENCPYRIKLRDDEDITAIFLCCSWSLTDDMLARK 522
Query: 179 VLSIMSMLELD 211
+L M +ELD
Sbjct: 523 LLCRMRGMELD 533
>ref|XP_023922515.1| cleavage and polyadenylation specificity factor subunit 3-II
[Quercus suber]
gb|POE97861.1| cleavage and polyadenylation specificity factor subunit 3-ii
[Quercus suber]
Length = 646
Score = 60.8 bits (146), Expect = 2e-07
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKV 181
EI +I+ + Q+ S + +C N +CPYR VFFCC WS +DE LA K+
Sbjct: 575 EISSGNIQDFGEHLQVESFDISVCLNDKCPYRIIDSQNKSEAVFFCCTWSVADEKLAWKI 634
Query: 182 LSIMSMLELD 211
+SIM + +
Sbjct: 635 ISIMENFDCE 644
>gb|OVA12168.1| Beta-lactamase-like [Macleaya cordata]
Length = 680
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/62 (46%), Positives = 37/62 (59%)
Frame = +2
Query: 20 IRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLSIMSM 199
I+ D QL S V IC CPY+ K+ S S V FCC WS +DE LA +V+S+M+
Sbjct: 612 IQEFPDHLQLESFHVSICRGNNCPYKIKEFSDGNSIVSFCCKWSLADEKLAWRVISVMND 671
Query: 200 LE 205
LE
Sbjct: 672 LE 673
>ref|XP_022155358.1| cleavage and polyadenylation specificity factor subunit 3-II
[Momordica charantia]
Length = 676
Score = 57.8 bits (138), Expect = 3e-06
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCC-WSFSDEALARK 178
E+ ++++ + Q+ S + IC CPYRTK S + FCCC W +DE LA K
Sbjct: 604 ELTDKNVQNLGEYLQVESFTLSICLKENCPYRTKNRIENESALVFCCCSWLVADEILAWK 663
Query: 179 VLSIMSMLEL 208
++SI+ L+L
Sbjct: 664 IISILEKLDL 673
>gb|EXC54202.1| hypothetical protein L484_001390 [Morus notabilis]
Length = 244
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCC-WSFSDEALARK 178
E ++R + Q+ S + ICS CPYR + +S FCCC WS DE +A K
Sbjct: 157 EFSDGNVRDFGEHLQVESFHLSICSKDSCPYRITDSAQNKSESLFCCCTWSVEDEKIAWK 216
Query: 179 VLSIMSMLELD 211
++SI+ +L+
Sbjct: 217 IISILKNFDLN 227
>emb|CAN61405.1| hypothetical protein VITISV_014259 [Vitis vinifera]
Length = 328
Score = 57.0 bits (136), Expect = 4e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +2
Query: 17 HIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLSIMS 196
+I+ Q++S+ + +C CPYRT S VFFCC WS +D LA +++SIM
Sbjct: 262 NIQDFGQHLQVDSIHISVCLKDICPYRTTDGPQKESAVFFCCTWSVADVNLAWEIISIME 321
Query: 197 MLEL 208
L+L
Sbjct: 322 NLDL 325
>ref|XP_023731342.1| cleavage and polyadenylation specificity factor subunit 3-II
[Lactuca sativa]
Length = 1006
Score = 57.4 bits (137), Expect = 4e-06
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +2
Query: 20 IRSTSDQFQLNSLQVQICSNRQCPYRTKKD--SAIRSTVFFCCCWSFSDEALARKVLSIM 193
+R ++NS +V++C N CP+R +D S VFFCC WS D+++A +V+S+M
Sbjct: 566 VRDCKGSLEVNSFRVRVCKNDDCPHRVDRDELSERLECVFFCCNWSILDKSIAWRVISVM 625
Query: 194 SMLEL--DYTEKTCVVL 238
++L Y E+ +L
Sbjct: 626 KNMDLPIKYQEQLVTLL 642
>ref|XP_010107067.2| cleavage and polyadenylation specificity factor subunit 3-II [Morus
notabilis]
Length = 292
Score = 56.6 bits (135), Expect = 4e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 EIDCSHIRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCC-WSFSDEALARK 178
E ++R + Q+ S + ICS CPYR + +S FCCC WS DE +A K
Sbjct: 205 EFSDGNVRDFGEHLQVESFHLSICSKDSCPYRITDSAQNKSESLFCCCTWSVEDEKIAWK 264
Query: 179 VLSIMSMLELD 211
++SI+ +L+
Sbjct: 265 IISILKNFDLN 275
>gb|PLY75759.1| hypothetical protein LSAT_3X53521 [Lactuca sativa]
Length = 630
Score = 57.0 bits (136), Expect = 5e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +2
Query: 20 IRSTSDQFQLNSLQVQICSNRQCPYRTKKD--SAIRSTVFFCCCWSFSDEALARKVLSIM 193
+R ++NS +V++C N CP+R +D S VFFCC WS D+++A +V+S+M
Sbjct: 566 VRDCKGSLEVNSFRVRVCKNDDCPHRVDRDELSERLECVFFCCNWSILDKSIAWRVISVM 625
Query: 194 SMLEL 208
++L
Sbjct: 626 KNMDL 630
>ref|XP_010271360.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II [Nelumbo nucifera]
Length = 694
Score = 57.0 bits (136), Expect = 5e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 35 DQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLSIMSMLELDY 214
D QL S V +C + CPY+ K+ + V FCC WS DE L +++S+M L+L Y
Sbjct: 617 DNLQLQSFHVHVCPDANCPYKVKEVIEDKPAVHFCCRWSTLDEKLGWRIISVMQGLDLTY 676
Query: 215 T 217
+
Sbjct: 677 S 677
>gb|OIT20683.1| cleavage and polyadenylation specificity factor subunit 3-ii
[Nicotiana attenuata]
Length = 518
Score = 56.6 bits (135), Expect = 6e-06
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 23 RSTSDQFQLNSLQVQICSNRQCPYRTK-KDSAIRSTVFFCCCWSFSDEALARKVLSIMSM 199
++ D+ Q+ S V +C +CP+RT + TV FCC WS DE LA +V+SIM
Sbjct: 453 QNDGDRLQIESFTVSVCLKEKCPHRTHVSPDSTSETVNFCCVWSMVDEKLAWRVISIMKN 512
Query: 200 LEL 208
LEL
Sbjct: 513 LEL 515
>ref|XP_022887411.1| cleavage and polyadenylation specificity factor subunit 3-II-like
isoform X3 [Olea europaea var. sylvestris]
Length = 528
Score = 56.6 bits (135), Expect = 6e-06
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +2
Query: 20 IRSTSDQFQLNSLQVQICSNRQCPYRTKKDSAIRSTVFFCCCWSFSDEALARKVLSIMSM 199
I+ + Q+ S V +C+ CP+RT + TV+FCC W+ +DE LA +++S++
Sbjct: 463 IQDCGEHLQIESFYVSVCTKEMCPHRTASLQCMPETVYFCCTWTIADEKLAWEIISVIKN 522
Query: 200 LEL 208
L L
Sbjct: 523 LLL 525