BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00014613
         (661 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   205   7e-58
emb|CDP17738.1| unnamed protein product [Coffea canephora]            202   5e-57
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   199   2e-55
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   181   1e-49
emb|CDP17739.1| unnamed protein product [Coffea canephora]            176   1e-49
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   181   6e-49
gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus...   175   9e-48
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   172   7e-46
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   168   3e-44
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   168   3e-44
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          167   6e-44
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   167   8e-44
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   166   1e-43
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   166   1e-43
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   166   1e-43
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        166   1e-43
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   166   1e-43
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            166   1e-43
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   166   2e-43
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     165   3e-43

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  205 bits (521), Expect = 7e-58
 Identities = 107/219 (48%), Positives = 141/219 (64%), Gaps = 3/219 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPSAR-SLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSSY 485
           +DG  R L  VRYVP  + +LIS+ ALES+GL V +   +++ T GALV++K    ++ Y
Sbjct: 273 HDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLY 332

Query: 484 FPRGSAV--RXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           + +GS V                  +LWH+RLGH G  SL+ L+++GL+ G   CKL  C
Sbjct: 333 YYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFC 392

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           EHC +GK+  VKFGT +H   G LD VH DVWGP+K  S+GG  +FV+FVDD SR VWV 
Sbjct: 393 EHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVF 452

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGKEK 14
           TM  K++VLE+F KW+  VE  TGRKIKVLQ DN G+ K
Sbjct: 453 TMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYK 491


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  202 bits (515), Expect = 5e-57
 Identities = 107/220 (48%), Positives = 145/220 (65%), Gaps = 4/220 (1%)
 Frame = -1

Query: 661  NDGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSSY 485
            +DG  R L  VRYVP+  RSLIS+  LES+GL+V++   +++VT GAL+++K  R ++ Y
Sbjct: 358  HDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLY 417

Query: 484  FPRGSAV---RXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRS 314
            + +GS V                  T+LWH+RLG  G  SL+ L+++GL+ G   CKL  
Sbjct: 418  YYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEF 477

Query: 313  CEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWV 134
            CEHC + K+  VKFGT +H   G LD VH DVWGP+K  SLGG  +FV+F+DD SR VWV
Sbjct: 478  CEHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWV 537

Query: 133  ATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGKEK 14
             TM  KDE+L++F KW+  VE QTGRKIK+L+ DN G+ K
Sbjct: 538  FTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYK 577


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 1032

 Score =  199 bits (507), Expect = 2e-55
 Identities = 107/222 (48%), Positives = 139/222 (62%), Gaps = 3/222 (1%)
 Frame = -1

Query: 658 DGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMK-IGRDSSSY 485
           DG +R L  VR+VPS +R+LISV ALE +G  V   G V+++  GALVVMK + +++  Y
Sbjct: 123 DGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMKGVRKNNRLY 182

Query: 484 FPRGSAV-RXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCE 308
           + +G+ +                 +LWH+RLGH G  SL  L ++GL+     CKL  CE
Sbjct: 183 YYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNIQACKLDFCE 242

Query: 307 HCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVAT 128
           HC  GKK  VKFGT +H   G LD VH DVWGPSK ASL G  ++V+FVDD SR +WV  
Sbjct: 243 HCVKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYA 302

Query: 127 MSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGKEKYSED 2
           M  KDEVL +F KW+K +E QTGRKIK  + DN G  +Y+ D
Sbjct: 303 MKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGG--EYTSD 342


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  181 bits (460), Expect = 1e-49
 Identities = 92/212 (43%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSSY 485
           +DG ++ L  VR++P   R+LIS+  LES G K    G V++V+KGA+V++K  R  S Y
Sbjct: 336 HDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLY 395

Query: 484 FPRGSAVRXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCEH 305
             +GS V               T+LWH+RLGH     +  LS++GL+      KL  CEH
Sbjct: 396 ILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEH 455

Query: 304 CSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVATM 125
           C  GK+  V F T  HR  G LD +H D+WGPSK  S GGCR+ ++ +DD SR VWV  +
Sbjct: 456 CVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFL 515

Query: 124 SRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
             K+E    FKKW+  VE QTG+K+K L+ DN
Sbjct: 516 RHKNETFPTFKKWKTLVETQTGKKVKKLRTDN 547


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score =  176 bits (447), Expect = 1e-49
 Identities = 90/181 (49%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
 Frame = -1

Query: 547 VIRVTKGALVVMKIGRDSSSYFPRGSAV---RXXXXXXXXXXXXXXTRLWHLRLGHTGIG 377
           +++VT GALV++K  R +  Y+ +GS V                  T+LWH+RLGH G  
Sbjct: 5   ILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGHAGEK 64

Query: 376 SLRALSRRGLIDGALTCKLRSCEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHA 197
           SL+ L+++GL+ G   CKL  CEHC + K+  VKFGT +H   G LD VH +VWGP+K  
Sbjct: 65  SLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSNVWGPAKTP 124

Query: 196 SLGGCRWFVSFVDDCSRHVWVATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGKE 17
           SLGG  +FV+F+DD SR VWV TM  KDEVLE+F KW+  VE QTGRKIK+L+ DN G+ 
Sbjct: 125 SLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDNGGEY 184

Query: 16  K 14
           K
Sbjct: 185 K 185


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  181 bits (460), Expect = 6e-49
 Identities = 92/212 (43%), Positives = 125/212 (58%), Gaps = 1/212 (0%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSSY 485
           +DG ++ L  VR++P   R+LIS+  LES G K    G V++V+KGA+V++K  R  S Y
Sbjct: 40  HDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLY 99

Query: 484 FPRGSAVRXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCEH 305
             +GS V               T+LWH+RLGH     +  LS++GL+      KL  CEH
Sbjct: 100 ILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEH 159

Query: 304 CSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVATM 125
           C  GK+  V F T  HR  G LD +H D+WGPSK  S GGCR+ ++ +DD SR VWV  +
Sbjct: 160 CVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFL 219

Query: 124 SRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
             K+E    FKKW+  VE QTG+K+K L+ DN
Sbjct: 220 RHKNETFPTFKKWKTLVETQTGKKVKKLRTDN 251


>gb|ONK68196.1| uncharacterized protein A4U43_C05F8640 [Asparagus officinalis]
          Length = 631

 Score =  175 bits (444), Expect = 9e-48
 Identities = 96/221 (43%), Positives = 133/221 (60%), Gaps = 1/221 (0%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPSAR-SLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSSY 485
           +DG+VREL  VR+VP  + ++ISV ALE++  K          T+ + V + I     S 
Sbjct: 321 HDGVVRELKEVRFVPQLKKNIISVGALEAKRFKGS--------TEISQVALAISEADIS- 371

Query: 484 FPRGSAVRXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCEH 305
                                  +LWH RLGHT   SL+ L ++ L+ GA + K+  CEH
Sbjct: 372 -----------------------KLWHYRLGHTSENSLQILCKQRLLKGAKSGKIEFCEH 408

Query: 304 CSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVATM 125
           C +GKK  VKFGT +H+  G +D +H DVWG +K+ SLGG  WFV+FVDD SRH WV TM
Sbjct: 409 CVLGKKTKVKFGTSIHQTRGIMDYMHTDVWGLTKNVSLGGQHWFVTFVDDYSRHCWVYTM 468

Query: 124 SRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGKEKYSED 2
           ++K EVL++F +W+K +E+QTGRKIK L+ DN G  +Y+ D
Sbjct: 469 TKKSEVLDIFVEWKKRLELQTGRKIKTLRSDNGG--EYTSD 507


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1326

 Score =  172 bits (437), Expect = 7e-46
 Identities = 91/217 (41%), Positives = 128/217 (58%), Gaps = 3/217 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VR++P  AR+LIS+  L++EG K    G V++V+KG+LV M    +S++ 
Sbjct: 342 HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANL 401

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           Y  RGS +                  LWH+RLGH     +  L +R L+DG    K++ C
Sbjct: 402 YVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFC 461

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           EHC  GK   VKF T VHR  G LD VH D+WGPS+ A LGG R+ ++ +DD SR VW  
Sbjct: 462 EHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPY 521

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
            +  KD+    FK+W+  +E QT +++KVL+ DN G+
Sbjct: 522 FLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGE 558


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score =  168 bits (425), Expect = 3e-44
 Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VR++P  AR+LIS+  L++EG K    G V++V+KG+LV M    +S++ 
Sbjct: 237 HDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 296

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           Y  RGS +                  +WH+RLGH     +  L +R L+DG     ++ C
Sbjct: 297 YVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 356

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           EHC  GK   VKF T VHR  G LD VH D+WGPS+  SLGG R+ ++ +DD SR VW  
Sbjct: 357 EHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPY 416

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAG 23
            +  KD+    FK+W+  ++ QT +++KVL+ DN G
Sbjct: 417 FLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGG 452


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  168 bits (425), Expect = 3e-44
 Identities = 89/217 (41%), Positives = 127/217 (58%), Gaps = 3/217 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DG+ R L  VR++P  AR+LIS+  L++EG K    G V++V+KG+LV M    +S++ 
Sbjct: 342 HDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 401

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           Y  RGS +                  LWH+RLGH     +  L +R L+DG     ++ C
Sbjct: 402 YVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 461

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           E C  GK   VKF T VHR  G LD VH D+WGPS+  SLGG R+ ++ +DD SR VW  
Sbjct: 462 ERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPY 521

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
            +  KD+    FK+W+  +E QT +++KVL+ DNAG+
Sbjct: 522 FLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGE 558


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  167 bits (422), Expect = 6e-44
 Identities = 91/215 (42%), Positives = 129/215 (60%), Gaps = 4/215 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPSAR-SLISVRALESEGLKVKLVGD--VIRVTKGALVVMKIGRDSS 491
           +DG VR L  VRY+P  R +LIS+  L+  G   +   D  +++V+KGAL VM++ R + 
Sbjct: 258 DDGGVRTLTNVRYIPELRKNLISLGTLQENGYSYRSDRDRDILKVSKGALTVMRVKRTAG 317

Query: 490 SYFPR-GSAVRXXXXXXXXXXXXXXTRLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRS 314
           + +   G+ V               T+LWHLRLGH     +  L +R L+ G  +CK+  
Sbjct: 318 NIYKLLGNTV--VGDVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDL 375

Query: 313 CEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWV 134
           C++C +GK+  V+F  + H+  G LD VH DVWGP++ AS+GG R+FV+F DD SR +WV
Sbjct: 376 CKYCVLGKQCRVRFKPMKHKTEGILDYVHSDVWGPTREASMGGSRYFVTFTDDFSRKLWV 435

Query: 133 ATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
             M +K EV   FK W+  VE QTGRKIK L+ DN
Sbjct: 436 YFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRSDN 470


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  167 bits (422), Expect = 8e-44
 Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 4/218 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VRY+P  +R+LIS+  L++EG K      V++V+KG+LV +K   +S+  
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXTR--LWHLRLGHTGIGSLRALSRRGLIDGALTCKLRS 314
           Y  RG  +               ++  LWH+RLGH     +  L +R L+ G  + K++ 
Sbjct: 400 YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 313 CEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWV 134
           CEHC  GK   V+F T VH   G LD VH D+WGPSK  SLGG R+ ++ +DD SR VW 
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 133 ATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
             +  KD+    FK W+  +E QT RK+K+L+ DN G+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGE 557


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  166 bits (421), Expect = 1e-43
 Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 4/218 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VRY+P  +R+LIS+  L++EG K      V++V+KG+LV +K   +S+  
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKL 399

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXTR--LWHLRLGHTGIGSLRALSRRGLIDGALTCKLRS 314
           Y  RG  +               ++  LWH+RLGH     +  L +R L+ G  + K++ 
Sbjct: 400 YVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 313 CEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWV 134
           CEHC  GK   V+F T VH   G LD VH D+WGPSK  SLGG R+ ++ +DD SR VW 
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWP 519

Query: 133 ATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
             +  KD+    FK W+  +E QT RK+K+L+ DN G+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGE 557


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1373

 Score =  166 bits (421), Expect = 1e-43
 Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 4/218 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VRY+P  +R+LIS+  L++EG K      V++V+KG+LV +K   +S+  
Sbjct: 340 DDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKL 399

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXTR--LWHLRLGHTGIGSLRALSRRGLIDGALTCKLRS 314
           Y  RG  +               ++  LWH+RLGH     +  L +R L+ G  + K++ 
Sbjct: 400 YVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKF 459

Query: 313 CEHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWV 134
           CEHC  GK   V+F T VH   G LD VH D+WGPSK  SLGG R+ ++ +DD SR VW 
Sbjct: 460 CEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWP 519

Query: 133 ATMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
             +  KD+    FK W+  +E QT RK+K+L+ DN G+
Sbjct: 520 YFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGE 557


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score =  166 bits (420), Expect = 1e-43
 Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 3/217 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VR++P  AR+LIS+  L++EG K    G V++V+KG+LV M    +S++ 
Sbjct: 282 HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSTNL 341

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           Y  RGS +                  LWH+RLGH     +  L +R L+DG     ++ C
Sbjct: 342 YVLRGSTLHGSITAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 401

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           EHC  GK   VKF T VHR  G LD VH D+WGPS+  SLGG  + ++ +DD SR VW  
Sbjct: 402 EHCVFGKHKRVKFNTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPY 461

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
            +  KD+    FK+W+  +E QT +++KVL+ D+ G+
Sbjct: 462 FLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDSGGE 498


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  166 bits (420), Expect = 1e-43
 Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 3/213 (1%)
 Frame = -1

Query: 658 DGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS-Y 485
           DG +R L  VR++P+  RSLIS+  L+ +G K      +++VTKG+LVVMK    S++ Y
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLY 409

Query: 484 FPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCE 308
             +G+ +                  LWH+RLGH     L  LS+RGL+DG    KL+ CE
Sbjct: 410 HLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCE 469

Query: 307 HCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVAT 128
           HC  GK   VKF T  H   G LD VH D+WGP++  S GG R+ ++ VDD SR VW   
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYF 529

Query: 127 MSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
           +  K +   VFK+W+  VE QT RK+K+L+ DN
Sbjct: 530 LKHKYQAFNVFKEWKTMVERQTERKVKILRTDN 562


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group]
 gb|AAN04164.1| Putative retrotransposon protein [Oryza sativa Japonica Group]
 gb|AAP53029.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
           [Oryza sativa Japonica Group]
          Length = 1229

 Score =  166 bits (420), Expect = 1e-43
 Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 3/217 (1%)
 Frame = -1

Query: 661 NDGMVRELHGVRYVPS-ARSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS- 488
           +DGM R L  VR++P  AR+LIS+  L++EG K    G V++V+KG+LV M    +S++ 
Sbjct: 339 HDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANL 398

Query: 487 YFPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSC 311
           Y  RGS +                  LWH+RLGH     +  L +R L+DG     ++ C
Sbjct: 399 YVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFC 458

Query: 310 EHCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVA 131
           EHC  GK   VKF T VHR  G LD VH D+WGPS+  SLGG  + ++ +DD SR VW  
Sbjct: 459 EHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPY 518

Query: 130 TMSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDNAGK 20
            +  KD+    FK+W+  +E Q  +++KVL+ DN G+
Sbjct: 519 FLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGE 555


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  166 bits (420), Expect = 1e-43
 Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
 Frame = -1

Query: 658 DGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS-Y 485
           DG +R L  VR++P+  RSLIS+  L+ +G K      +++VTKG+LVVMK    S++ Y
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 409

Query: 484 FPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCE 308
             RG+ +                  LWH+RLGH     L  LS+RGL+DG    KL+ CE
Sbjct: 410 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 469

Query: 307 HCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVAT 128
           HC  GK   VKF T  H   G LD VH D+WGP++  S GG R+ ++ VDD SR VW   
Sbjct: 470 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYF 529

Query: 127 MSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
           +  K +  +VFK+W+  VE QT RK+K+L+ DN
Sbjct: 530 LKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 562


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  166 bits (420), Expect = 2e-43
 Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
 Frame = -1

Query: 658  DGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIGRDSSS-Y 485
            DG +R L  VR++P+  RSLIS+  L+ +G K      +++VTKG+LVVMK    S++ Y
Sbjct: 557  DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 616

Query: 484  FPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCE 308
              RG+ +                  LWH+RLGH     L  LS+RGL+DG    KL+ CE
Sbjct: 617  HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCE 676

Query: 307  HCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVAT 128
            HC  GK   VKF T  H   G LD VH D+WGP++  S GG R+ ++ VDD SR VW   
Sbjct: 677  HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYF 736

Query: 127  MSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
            +  K +  +VFK+W+  VE QT RK+K+L+ DN
Sbjct: 737  LKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 769


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  165 bits (418), Expect = 3e-43
 Identities = 90/213 (42%), Positives = 124/213 (58%), Gaps = 3/213 (1%)
 Frame = -1

Query: 658 DGMVRELHGVRYVPSA-RSLISVRALESEGLKVKLVGDVIRVTKGALVVMKIG-RDSSSY 485
           DG +R L  VR++P+  RSLIS+  L+ +G K      +++VTKG+LVVMK   + ++ Y
Sbjct: 259 DGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLY 318

Query: 484 FPRGSAVRXXXXXXXXXXXXXXT-RLWHLRLGHTGIGSLRALSRRGLIDGALTCKLRSCE 308
             RG+ +                  LWH+RLGH     L  LS+RGL+DG    KL+ CE
Sbjct: 319 HLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCE 378

Query: 307 HCSVGKKATVKFGTVVHRPSGFLDLVHVDVWGPSKHASLGGCRWFVSFVDDCSRHVWVAT 128
           HC  GK   VKF T  H   G LD VH D+WGP++  S GG R+ ++ VDD SR VW   
Sbjct: 379 HCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYF 438

Query: 127 MSRKDEVLEVFKKWRKCVEIQTGRKIKVLQFDN 29
           +  K +  +VFK+W+  VE QT RK+K+L+ DN
Sbjct: 439 LKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 471