BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00013585
         (867 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OEL32462.1| DNA-directed RNA polymerase II subunit 1 [Dichant...    89   4e-16
gb|PNT36093.1| hypothetical protein POPTR_005G107600v3 [Populus ...    77   6e-12

>gb|OEL32462.1| DNA-directed RNA polymerase II subunit 1 [Dichanthelium oligosanthes]
          Length = 1901

 Score = 89.4 bits (220), Expect = 4e-16
 Identities = 48/103 (46%), Positives = 64/103 (62%)
 Frame = -2

Query: 863  NIAFIQSNFSFIQSHITCL*PHFPWVQPNFSEL*SHFSQLQSYISELQSTLSKI*PIPYI 684
            NI  IQ    FIQ +I C+ P+  W+QPN ++L    ++LQSY SELQS +S++ P   I
Sbjct: 1670 NIPIIQPYLPFIQPNIACIQPYLAWIQPNITKLQPDITKLQSYFSELQSFISQVQPFACI 1729

Query: 683  LSKQSEAVTSKSIQCKFSKLQPNFTNLFSNFSFIFPSKSYVQP 555
             SKQ +     SIQ  FSKLQ N T+L S  + IF +KS +QP
Sbjct: 1730 FSKQPK---DDSIQSDFSKLQSNVTDLLSYITIIFTTKSVIQP 1769


>gb|PNT36093.1| hypothetical protein POPTR_005G107600v3 [Populus trichocarpa]
          Length = 1723

 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 59/152 (38%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
 Frame = -1

Query: 867  VQHRL-------HTVQLLLHTVPHHLLIAPLPLGTAQLLRVIVPLLPVTVLHLRVTIHPQ 709
            VQH L       HT     HT PH  L AP P  TA L + I      T    +VT   Q
Sbjct: 1551 VQHHLRTALPPHHTAPPPHHTAPHPHLTAPHPHPTAPLHQPIAQPPLATAQPRQVTTPNQ 1610

Query: 708  QNIAHPLHTLQAVRGCHQQVHTVQVXXXXXXXXXXXXXXXXXXXXXXLRTALQVHTILV* 529
            QN AH  HT  AV+ CHQ V TVQ                         T L VH ILV 
Sbjct: 1611 QNTAHHWHTHLAVQDCHQPVLTVQHLQIIAQHHPLIRPHLHHIPLQVRPTVLAVHIILVS 1670

Query: 528  ALITVQALHSTAQVRVTRQLHRDIHHPRPVST 433
            A  T Q LHST QV+ T Q+   I H  P +T
Sbjct: 1671 AQTTAQVLHSTVQVQDTHQVPLGIRHHLPANT 1702