BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon27_contig00012479
         (1638 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         717   0.0  
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...   712   0.0  
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo...   712   0.0  
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...   694   0.0  
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           693   0.0  
gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposo...   661   0.0  
gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   672   0.0  
gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]      670   0.0  
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   661   0.0  
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            637   0.0  
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   654   0.0  
gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymera...   652   0.0  
ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotei...   636   0.0  
ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brass...   625   0.0  
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   622   0.0  
dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subt...   622   0.0  
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      617   0.0  
gb|KYP48282.1| Retrovirus-related Pol polyprotein from transposo...   588   0.0  
gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposo...   580   0.0  
ref|XP_022549646.1| uncharacterized protein LOC111201676, partia...   625   0.0  

>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  717 bits (1852), Expect = 0.0
 Identities = 356/557 (63%), Positives = 430/557 (77%), Gaps = 12/557 (2%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF H+P+DERSKLD K+R CI++GY  D+FG+RL+DP  KK+ RSRDVVF E+QTI
Sbjct: 646  FGCKAFVHVPRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTI 705

Query: 1456 EDIKKEKGQVKPSNDGGNVRD---------DIIVPSPGEGQVQXXXXXXXAPTEDID-HG 1307
            EDI K K     S D G++ D         D +       Q           T D+D H 
Sbjct: 706  EDIDKVKQP--ESRDSGSLVDIEPVSRRYTDDVDEVQENVQNGDPVPDYQGDTVDVDGHA 763

Query: 1306 DVGEQSPQQAPAATPV--VRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQE 1133
            D      Q+ P+  PV   RRSDR+R PSTRYS  +Y+LLTD GEPESY E  +SDQK++
Sbjct: 764  DDVVHQEQEVPSQVPVDLPRRSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQKRQ 823

Query: 1132 WLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQ 953
            W EAMQ+EM+SL  N T++LVK P  ++ALKNRWV+R+K EE  + PR+KARLVVKGF+Q
Sbjct: 824  WFEAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQ 883

Query: 952  RKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFA 773
            +KG+DF EIFSPVVK SSIRVVLGLAA LD+EIEQ+DVKTAFLHGDL EEIYMEQPEGF 
Sbjct: 884  KKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFK 943

Query: 772  EKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIIL 593
             KGKE  VCRLKKSLYGLKQAPRQWY+KF S M    Y + +SDHCV++ RY   DF+IL
Sbjct: 944  VKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVIL 1003

Query: 592  LIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESY 413
            L+YVDDMLIVG++ S+I++LK+ELS SF MKD+G A+QILGM I RDR+ ++LW+SQE Y
Sbjct: 1004 LLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKY 1063

Query: 412  IEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCT 233
            IEKVLERF M +AKPVS+PL  HFKL  +QCPS+E EKEEM+ VPY+SAVGSLMYAMVCT
Sbjct: 1064 IEKVLERFHMNEAKPVSTPLDMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCT 1123

Query: 232  RPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAG 53
            RPDIAHAVGVVSRF+SNPG+EHW AVKWI+RYLRGT+  +LCFG     L  Y+D+D AG
Sbjct: 1124 RPDIAHAVGVVSRFLSNPGREHWDAVKWILRYLRGTSSLSLCFGTGKPILTGYTDSDMAG 1183

Query: 52   DVDTRRSTSGYLVTFAG 2
            D+DTR+STSGYL+T+AG
Sbjct: 1184 DIDTRKSTSGYLITYAG 1200


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  712 bits (1839), Expect = 0.0
 Identities = 351/546 (64%), Positives = 424/546 (77%), Gaps = 1/546 (0%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGCRAF HIPKDER+KLD K++ CIYL    D+FG+RLWDP  KKV RSRDVVF EDQTI
Sbjct: 634  FGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTI 693

Query: 1456 EDIKK-EKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXAPTEDIDHGDVGEQSPQQ 1280
            EDIK  EK +++ S +   V+ +           +       +  E   H +  ++ PQ 
Sbjct: 694  EDIKNSEKPRLRKSTELTPVQHENNETHQDNDPEEDEPVLEQSNQET--HDEPAQEDPQS 751

Query: 1279 APAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDS 1100
            +    P  RRS R+R PST Y+++EY++LTD GEP+SY+E      K+EW +AMQ+EM S
Sbjct: 752  SSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKAMQEEMQS 811

Query: 1099 LEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFS 920
            L +NHTY+LV+LP G+RALKN+WV+R+K E+N  KPRYKARLVVKGF Q KG+DF+EIFS
Sbjct: 812  LHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGIDFEEIFS 871

Query: 919  PVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCRL 740
            PVVKMSSIRV+LG+AA+ DLEIEQLDVKTAFLHGDL EEIYMEQPEGF   GKE LVCRL
Sbjct: 872  PVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFKVPGKENLVCRL 931

Query: 739  KKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYVDDMLIVG 560
             KSLYGLKQAPRQWY+KF+SFM    + +  SDHCV+IKRY SGDF+ILL+YVDDMLI G
Sbjct: 932  TKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLLYVDDMLIFG 991

Query: 559  QDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKVLERFSMQ 380
            QD  KI  LKK+LS SF MKDLG A+QILGM I+RDR  R LW+SQE YIEKVLE+F+M 
Sbjct: 992  QDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKVLEQFNMD 1051

Query: 379  KAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDIAHAVGVV 200
            K KPV++PLA HF+LSS+Q P++E E EEMK +PY+S VGSLMYAM+CTRPDIA+AVGVV
Sbjct: 1052 KCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDIAYAVGVV 1111

Query: 199  SRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDTRRSTSGY 20
            SRF+++PG EHW AVKWI+RYLRGT+K  LCFG     L  Y+DAD AGD+D+R+STSGY
Sbjct: 1112 SRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDSRKSTSGY 1171

Query: 19   LVTFAG 2
            L TFAG
Sbjct: 1172 LTTFAG 1177


>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  712 bits (1839), Expect = 0.0
 Identities = 351/546 (64%), Positives = 424/546 (77%), Gaps = 1/546 (0%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGCRAF HIPKDER+KLD K++ CIYL    D+FG+RLWDP  KKV RSRDVVF EDQTI
Sbjct: 634  FGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTI 693

Query: 1456 EDIKK-EKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXAPTEDIDHGDVGEQSPQQ 1280
            EDIK  EK +++ S +   V+ +           +       +  E   H +  ++ PQ 
Sbjct: 694  EDIKNSEKPRLRKSTELTPVQHENNETHQDNDPEEDEPVLEQSNQET--HDEPAQEDPQS 751

Query: 1279 APAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDS 1100
            +    P  RRS R+R PST Y+++EY++LTD GEP+SY+E      K+EW +AMQ+EM S
Sbjct: 752  SSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEGEPQSYKEAIKDIHKEEWRKAMQEEMQS 811

Query: 1099 LEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFS 920
            L +NHTY+LV+LP G+RALKN+WV+R+K E+N  KPRYKARLVVKGF Q KG+DF+EIFS
Sbjct: 812  LHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGIDFEEIFS 871

Query: 919  PVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCRL 740
            PVVKMSSIRV+LG+AA+ DLEIEQLDVKTAFLHGDL EEIYMEQPEGF   GKE LVCRL
Sbjct: 872  PVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFKVPGKENLVCRL 931

Query: 739  KKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYVDDMLIVG 560
             KSLYGLKQAPRQWY+KF+SFM    + +  SDHCV+IKRY SGDF+ILL+YVDDMLI G
Sbjct: 932  TKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLLYVDDMLIFG 991

Query: 559  QDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKVLERFSMQ 380
            QD  KI  LKK+LS SF MKDLG A+QILGM I+RDR  R LW+SQE YIEKVLE+F+M 
Sbjct: 992  QDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKVLEQFNMD 1051

Query: 379  KAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDIAHAVGVV 200
            K KPV++PLA HF+LSS+Q P++E E EEMK +PY+S VGSLMYAM+CTRPDIA+AVGVV
Sbjct: 1052 KCKPVNTPLAGHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDIAYAVGVV 1111

Query: 199  SRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDTRRSTSGY 20
            SRF+++PG EHW AVKWI+RYLRGT+K  LCFG     L  Y+DAD AGD+D+R+STSGY
Sbjct: 1112 SRFLADPGNEHWLAVKWILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDSRKSTSGY 1171

Query: 19   LVTFAG 2
            L TFAG
Sbjct: 1172 LTTFAG 1177


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  694 bits (1790), Expect = 0.0
 Identities = 351/547 (64%), Positives = 416/547 (76%), Gaps = 2/547 (0%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGCRAF HIPKDER+KLD K + CIYL    D+ GFRLWDP  KK+ RSRDV+F EDQTI
Sbjct: 644  FGCRAFVHIPKDERTKLDAKVKECIYLRSPKDELGFRLWDPVNKKIVRSRDVIFFEDQTI 703

Query: 1456 EDIKK-EKGQVKPSNDGGNVRDDIIVPSPGE-GQVQXXXXXXXAPTEDIDHGDVGEQSPQ 1283
            +DIKK EK + K   D   +   +I  S GE  Q          P  +       EQ   
Sbjct: 704  QDIKKPEKPKQKEVQDSSPI---VINNSGGEISQRIDEPNQTEQPESEQSQTMQEEQMET 760

Query: 1282 QAPAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMD 1103
                  P VRRS R R PS RY S +Y+ LTD GEP+S+ E  + + K++WL+AM++E+ 
Sbjct: 761  NQEEQEPEVRRSMRVRQPSKRYFSDDYVNLTDEGEPQSFIEAIEMNDKEKWLQAMEEELQ 820

Query: 1102 SLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIF 923
            SL++N TY+LV+LP G++ALKN+WVF+LK EEN  KPRYKAR+VVKG NQ+KG+DF+EIF
Sbjct: 821  SLKENETYELVELPQGRKALKNKWVFKLKTEENNTKPRYKARIVVKGCNQKKGIDFEEIF 880

Query: 922  SPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCR 743
            SPVVKM+SIR +LGLAA LDLEIEQLDVKTAFLHGDL EEIYMEQPEGFAE GKE LVCR
Sbjct: 881  SPVVKMTSIRAILGLAAKLDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFAEPGKEHLVCR 940

Query: 742  LKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYVDDMLIV 563
            LKKSLYGLKQAPRQWY+KFD FM    + + ++D CV++K Y +G+ IILL+YVDDMLIV
Sbjct: 941  LKKSLYGLKQAPRQWYKKFDLFMAQHNFKKTSADQCVFVKNYENGESIILLLYVDDMLIV 1000

Query: 562  GQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKVLERFSM 383
            G+D +KI  LKK LS SF MKDLGS ++ILGM I RDR  R LW+SQE YI+KVLERF+M
Sbjct: 1001 GKDKTKIAALKKALSKSFAMKDLGSVKKILGMKIIRDRSKRMLWMSQEDYIKKVLERFNM 1060

Query: 382  QKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDIAHAVGV 203
              AK V  PL  H KLS +QCP  E EKEEM  VPY+SAVGSLMYAMVCTRPDIA+AVGV
Sbjct: 1061 HNAKSVHVPLPGHLKLSKKQCPVNE-EKEEMSKVPYSSAVGSLMYAMVCTRPDIAYAVGV 1119

Query: 202  VSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDTRRSTSG 23
            VSRF+SNPGKEHW AVKWI+RYL+GT K+ LCFG+ +  L  YSDAD AGDVD+R+STSG
Sbjct: 1120 VSRFLSNPGKEHWNAVKWILRYLKGTAKSCLCFGNGNLMLTGYSDADMAGDVDSRKSTSG 1179

Query: 22   YLVTFAG 2
            YL+TFAG
Sbjct: 1180 YLITFAG 1186


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  693 bits (1788), Expect = 0.0
 Identities = 342/556 (61%), Positives = 426/556 (76%), Gaps = 11/556 (1%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+A+ H+PKDERSKLD K+R C+++GY  D  G++ +DP  KK+ RSRDVVF+EDQTI
Sbjct: 648  FGCKAYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTI 707

Query: 1456 EDIKK-EKG-------QVKPSNDGGNVRDDIIVPSP-GEGQVQXXXXXXXAPTEDIDHGD 1304
            EDI K EK        ++ P+     V DD+    P   G             ED    D
Sbjct: 708  EDIDKVEKSTDDSAEFELPPTVVPRQVGDDVQDNQPEAPGLPNEDELADTEGNEDNGDDD 767

Query: 1303 VGEQSPQQAPAAT--PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEW 1130
              E+   Q P     P   RS R    STRYS  EY+LLTD GEP+S+ E  D + K++W
Sbjct: 768  ADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKW 827

Query: 1129 LEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQR 950
            +EAMQDE+ SL +N T++LVKLP GKRALKN+WVF++K +E+ + PR+KARLVVKGFNQR
Sbjct: 828  IEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQR 887

Query: 949  KGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAE 770
            KG+DF EIFSPVVKM+SIR VLGLAASL+LE+EQ+DVKTAFLHGDL EEIYMEQP+GF +
Sbjct: 888  KGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQ 947

Query: 769  KGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILL 590
            KGKE  VCRL+KSLYGLKQAPRQWY+KF+S M    Y +  SDHCV+ +++   DFIILL
Sbjct: 948  KGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILL 1007

Query: 589  IYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYI 410
            +YVDDMLIVG+++S+I  LK++LS  F MKDLG A+QILGM I RDR+ ++LW+SQE YI
Sbjct: 1008 LYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYI 1067

Query: 409  EKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTR 230
            EKVL+RF+M+K K VS PLA+HF+LS++Q PST+ E+ +M+ +PYASAVGSLMYAMVCTR
Sbjct: 1068 EKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTR 1127

Query: 229  PDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGD 50
            PDIAHAVGVVSRF+SNPGKEHW AVKWI+RYLRGT+K  LCFG+ +  LV Y+DAD AGD
Sbjct: 1128 PDIAHAVGVVSRFLSNPGKEHWDAVKWILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGD 1187

Query: 49   VDTRRSTSGYLVTFAG 2
            VD+R+STSGYL+ F+G
Sbjct: 1188 VDSRKSTSGYLINFSG 1203


>gb|KYP42630.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 701

 Score =  661 bits (1705), Expect = 0.0
 Identities = 338/569 (59%), Positives = 414/569 (72%), Gaps = 24/569 (4%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF H+ KDERSKLD K+R CI++GY  D+FG+RL+DP  KK+ RS DV  MEDQTI
Sbjct: 64   FGCKAFVHVSKDERSKLDTKTRQCIFIGYGQDEFGYRLYDPVEKKLVRSHDVQLMEDQTI 123

Query: 1456 EDIKK-EKGQVKPSN---DGGNVR------DDIIVPSPGEGQV-----QXXXXXXXAPTE 1322
            EDI K EK   K  N   DG  +R      D++   +P + Q      Q        P +
Sbjct: 124  EDINKVEKTTPKKDNNLTDGNPMRLPIHNLDNVETDAPNDEQHGDVDDQQNGDVLEVPID 183

Query: 1321 DI---------DHGDVGEQSPQQAPAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPES 1169
            D          D  D   + PQ  P      RRS++ R  S+RYSS EY+ LTD GEPE 
Sbjct: 184  DTQEEHDMVHDDDLDNAHELPQVPP------RRSNKLRQFSSRYSSDEYVALTDGGEPEC 237

Query: 1168 YREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPR 989
            + E  +S++KQ WL+AMQDEM SL  NHTYDLVKLP GKRAL+NRW+FR+KQE N   PR
Sbjct: 238  FEEALESEKKQRWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFRVKQESNSTSPR 297

Query: 988  YKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLH 809
            YKARLVVKGF QR  VDF EIFSPVVKMSSIR VL L A+LDLE+EQ+DVKTAFLHG+L 
Sbjct: 298  YKARLVVKGFRQRNDVDFNEIFSPVVKMSSIRTVLSLVATLDLEVEQMDVKTAFLHGNLE 357

Query: 808  EEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVY 629
            EEIYM+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+SFM  Q Y +  SDHCV+
Sbjct: 358  EEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESFMCEQGYKKTTSDHCVF 417

Query: 628  IKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDR 449
            +K++   DFIILL+YVDDMLIV +D+S+I++LKK+L  +F MKDLG+A++ILG+SI    
Sbjct: 418  VKKFSDDDFIILLLYVDDMLIVEKDVSRIDRLKKQLGEAFAMKDLGAAKKILGISI---- 473

Query: 448  KTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYAS 269
            K ++LW+SQE YI+KVL+RF M+ +K V +PLA+HFKLS +Q PS E EK  M  VPY  
Sbjct: 474  KEKKLWLSQEHYIKKVLQRFQMENSKVVGTPLAAHFKLSVKQSPSNEAEKTYMSKVPYVY 533

Query: 268  AVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSH 89
            AVGSLMY MVCTRPD+A+ VG VSRF+SNP +EHW AVKWI+RYL GT+   LCFG    
Sbjct: 534  AVGSLMYPMVCTRPDVAYVVGTVSRFLSNPSREHWNAVKWILRYLHGTSGLRLCFGGDKP 593

Query: 88   RLVCYSDADWAGDVDTRRSTSGYLVTFAG 2
             LV YS++D AGDVD+R+STSGYL+ FAG
Sbjct: 594  TLVGYSNSDMAGDVDSRKSTSGYLINFAG 622


>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  672 bits (1735), Expect = 0.0
 Identities = 335/558 (60%), Positives = 426/558 (76%), Gaps = 13/558 (2%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF H+PK++RSKLD K+  C+++GY  ++FG++LWDPE K++ RSRDV+F E +TI
Sbjct: 644  FGCKAFMHVPKEQRSKLDDKAIPCVFVGYGNEEFGYKLWDPERKRIVRSRDVIFHEHETI 703

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPGEG-QVQXXXXXXXAPT----EDIDHGDV--- 1301
            ED+K  +   KP  DG N    +      +G Q Q        P     E +D   V   
Sbjct: 704  EDLKGGEA-AKPMEDGVNPTSHVPSECATDGRQTQEPEHETEEPVFGDEESVDEEVVVPD 762

Query: 1300 GEQSPQQAPAAT-----PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQ 1136
             E + Q  P+ T     P +RRS R+R PST+Y S EYIL+ D GEPES++EV+    K 
Sbjct: 763  TEANEQGEPSYTSGQVEPQIRRSTRERQPSTKYPSSEYILIADEGEPESFQEVQSHKDKG 822

Query: 1135 EWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFN 956
             W++AMQ+EMDSL++N+TY+LV+LP G+R LKN+WVF+LK++ +    R+KARLVVKGF+
Sbjct: 823  CWVKAMQEEMDSLKRNNTYELVQLPKGRRVLKNKWVFKLKKDGDKLV-RHKARLVVKGFS 881

Query: 955  QRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGF 776
            Q++G+DF+EIFSPVVKM SIRV+LGL AS+DLE+EQLDVKTAFLHGDL EEIYMEQPEGF
Sbjct: 882  QKQGIDFEEIFSPVVKMCSIRVILGLVASMDLELEQLDVKTAFLHGDLDEEIYMEQPEGF 941

Query: 775  AEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFII 596
              KGKE +VC+LKKSLYGLKQAPRQWY+KFDSF+K+Q + R  +D CVYI RYP+G F+I
Sbjct: 942  EVKGKEDMVCKLKKSLYGLKQAPRQWYKKFDSFIKSQGFKRTDADPCVYINRYPNGKFLI 1001

Query: 595  LLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQES 416
            LL+YVDDMLIVGQD+  I+ LK ELS +F+MKD+G+A+ ILGM I RDRK  +LW+SQE 
Sbjct: 1002 LLLYVDDMLIVGQDVQMIKNLKVELSKAFDMKDMGAAKHILGMDIIRDRKAGKLWLSQER 1061

Query: 415  YIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVC 236
            YIE+VLERF+M+ AKPV +PL  HFKLS + CP+    +E+M  +PY+SAVGSLMYAMVC
Sbjct: 1062 YIERVLERFNMKNAKPVITPLVGHFKLSKKSCPTI---REKMSTIPYSSAVGSLMYAMVC 1118

Query: 235  TRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWA 56
            TRPDIAHAVGVVSR++SNPGK HW AVKWI+RYLRGT+K  L FG     L  Y+DAD A
Sbjct: 1119 TRPDIAHAVGVVSRYLSNPGKTHWEAVKWILRYLRGTSKLCLRFGGAKPILEGYTDADMA 1178

Query: 55   GDVDTRRSTSGYLVTFAG 2
            GD+D R+STSGY+ TF+G
Sbjct: 1179 GDLDDRKSTSGYIFTFSG 1196


>gb|PNX95528.1| putative gag/pol polyprotein [Trifolium pratense]
          Length = 1339

 Score =  670 bits (1728), Expect = 0.0
 Identities = 337/558 (60%), Positives = 421/558 (75%), Gaps = 13/558 (2%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC A+ HIPKDERSKLD KS+ C+++GY  D+FG+R +DP  +K+ RSRDVVFMED TI
Sbjct: 655  FGCMAYVHIPKDERSKLDEKSKKCVFVGYGLDEFGYRFFDPVQRKLIRSRDVVFMEDYTI 714

Query: 1456 EDIKKEKGQVKPSNDGG--NVRDDIIVPSPG-------EGQ-VQXXXXXXXAPTEDIDHG 1307
            EDI K + +     D    ++    I P+P        E Q +         P + +D G
Sbjct: 715  EDIDKVENKDPTFEDEEIVDIGSTTIAPTPIIFEDAPIENQGMDLNVDNVLNPNDVVDVG 774

Query: 1306 ---DVGEQSPQQAPAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQ 1136
               DV E    Q  A+  + RRS RD+ PS RY S EY+ LTD GEPE+++EV + + K+
Sbjct: 775  ATNDVVENEVVQEVASNEL-RRSTRDKRPSVRYPSNEYVFLTDGGEPENFKEVLEDENKK 833

Query: 1135 EWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFN 956
            EW++AM+DEM SL +N+T++LVKLP GKRALKNRWV+R+KQ+E  ++ RYKARLVVKGF 
Sbjct: 834  EWMDAMEDEMQSLRENNTFELVKLPKGKRALKNRWVYRIKQDECTSQRRYKARLVVKGFK 893

Query: 955  QRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGF 776
            QR+G+DF EIF+PVVKM SIR+VLGLAASLDLE+E++DVKT FLHGDLHEEIYMEQP+GF
Sbjct: 894  QREGIDFGEIFAPVVKMQSIRMVLGLAASLDLEVEKMDVKTTFLHGDLHEEIYMEQPDGF 953

Query: 775  AEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFII 596
             EKGKE  VC+L KSLYGLKQAPRQWY+KF+S M    Y    +DHCV+ +     DFII
Sbjct: 954  REKGKEDYVCKLVKSLYGLKQAPRQWYQKFNSVMIEHGYKMTKADHCVFFRNLSEDDFII 1013

Query: 595  LLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQES 416
            LL+YVDDMLIVG+++S+I +LK  LS SF MKDLG+AR+ILG+ I RDR  ++L++SQE 
Sbjct: 1014 LLLYVDDMLIVGKNISRIRELKNTLSESFSMKDLGAARKILGIEIVRDRNEKKLYLSQEK 1073

Query: 415  YIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVC 236
            Y+EKVL RFSM KAK VS PLASHFKLS + CPST+ EK  MK++PY+SAVGSLMYAMVC
Sbjct: 1074 YVEKVLRRFSMDKAKAVSIPLASHFKLSHKLCPSTDEEKLRMKSIPYSSAVGSLMYAMVC 1133

Query: 235  TRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWA 56
            TRPDIAHAVGVVSR++SNPGK HW AVKW+MRYLRG++   L  G +   LV Y+D+D A
Sbjct: 1134 TRPDIAHAVGVVSRYLSNPGKVHWEAVKWVMRYLRGSSNLKLTLGCKKPMLVGYTDSDLA 1193

Query: 55   GDVDTRRSTSGYLVTFAG 2
            G +D R+STSG +VTFAG
Sbjct: 1194 GSLDDRKSTSGXMVTFAG 1211


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  661 bits (1705), Expect = 0.0
 Identities = 332/573 (57%), Positives = 427/573 (74%), Gaps = 28/573 (4%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AFAH+PK++RSKLD K+  CI+LGY  ++ G+RLW+P+ KK+FRSRDVVF E QTI
Sbjct: 652  FGCKAFAHVPKEQRSKLDDKAMPCIFLGYGNEEMGYRLWNPKTKKLFRSRDVVFHEGQTI 711

Query: 1456 EDIKKEKG-------------QVKPSNDGGN-VRDDIIVPSPGEGQVQXXXXXXXAPTED 1319
             D  K +              Q +PS+   + V +D  VP   E +            ED
Sbjct: 712  ADFDKNEVEHADQLTYDSSPLQEEPSDKAQDMVNED--VPDMAEAEAAEP--------ED 761

Query: 1318 IDHGDVGEQSPQQAPAATPVVRRSDRDRHPSTRYSSQEYIL--------------LTDAG 1181
             D G+   Q  Q   A  PV RRS+R+  P+T+Y S +YIL              LT+ G
Sbjct: 762  NDQGEPN-QGEQLENAQVPV-RRSNREPKPNTKYHSSQYILVTSDGDDPYSRYILLTNDG 819

Query: 1180 EPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENG 1001
            EPE + E +      +W+ AM+ EM+SL KN TY+LV+LP G++ALKN+WVF+LK++EN 
Sbjct: 820  EPECFEEAKTHADCDKWMLAMKSEMESLLKNDTYELVELPKGRKALKNKWVFKLKRDENE 879

Query: 1000 AKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLH 821
               ++KARLVVKGF Q++G+DF EIFSPVVKM+SIR++LG+AAS+DLE+EQLDVKTAFLH
Sbjct: 880  QLTKFKARLVVKGFGQKEGIDFDEIFSPVVKMTSIRIILGMAASMDLEVEQLDVKTAFLH 939

Query: 820  GDLHEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASD 641
            GDL EEIYMEQPEGF  +GK+ +VC+LKKSLYGLKQAPRQWY+KFDSFM    Y R  +D
Sbjct: 940  GDLEEEIYMEQPEGFEVEGKQHMVCKLKKSLYGLKQAPRQWYKKFDSFMVGHGYKRTDAD 999

Query: 640  HCVYIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSI 461
             CVY++R+  G+FIILL+YVDDMLIVG+D+S I KLK +LS SF+MKDLG A+QILGM I
Sbjct: 1000 PCVYLQRFTGGNFIILLLYVDDMLIVGKDVSMIHKLKADLSKSFDMKDLGPAKQILGMEI 1059

Query: 460  SRDRKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAV 281
            +RDR+ ++LW+SQE Y+E+VLERF+M++AK VSSPL +HFKLS   CP+T++EK++M  +
Sbjct: 1060 TRDRQAKKLWLSQERYVERVLERFNMKEAKSVSSPLGNHFKLSRLSCPTTQVEKDKMAGI 1119

Query: 280  PYASAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFG 101
            PY+SAVGSLMYAMVCTRPDIAHAVGVVSR++SNPG+EHW AVKWI++YLRGT+K  LCFG
Sbjct: 1120 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRYLSNPGREHWEAVKWILKYLRGTSKLCLCFG 1179

Query: 100  DRSHRLVCYSDADWAGDVDTRRSTSGYLVTFAG 2
                 L  ++DAD AGD+D R+STS YL TF+G
Sbjct: 1180 GSEPILEGFTDADLAGDLDNRKSTSAYLFTFSG 1212


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  637 bits (1644), Expect = 0.0
 Identities = 322/573 (56%), Positives = 406/573 (70%), Gaps = 36/573 (6%)
 Frame = -3

Query: 1615 HIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFME----------- 1469
            H+PK+ R KLD K+  C+++GY  ++FG+RL+DP  +KV RSRDVVF E           
Sbjct: 2    HVPKEHRLKLDFKTSPCVFVGYGDEEFGYRLYDPAKQKVVRSRDVVFYEHEMSFHLLGAD 61

Query: 1468 -----------------------DQTIEDIKKEKGQVKPSNDG-GNVRDDIIVPSPGEGQ 1361
                                   DQ   D  ++  ++   +D    V+ D++VP P +  
Sbjct: 62   KTYYSNFSHDVIDMPMPHVSASDDQLTGDAPEDGHEIAHEHDHIEEVQPDVVVPQPDDEA 121

Query: 1360 VQXXXXXXXAPTEDIDHGDVGEQSPQQAP-AATPVVRRSDRDRHPSTRYSSQEYILLTDA 1184
            V            D+ HG+   Q  + +P    P +R+S R R PS  Y S EYIL+TD 
Sbjct: 122  V------------DVQHGESSNQGEKSSPHVEEPTLRKSTRVRQPSRLYPSSEYILITDE 169

Query: 1183 GEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEEN 1004
            GEPES +EV     K  WL+AMQ++MDSL+KN TYDLVK P GK+ LKNRW+F+ K++ N
Sbjct: 170  GEPESLQEVLSHSDKDHWLKAMQEDMDSLKKNETYDLVKPPKGKKVLKNRWLFKNKKDGN 229

Query: 1003 GAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFL 824
                R KARLVVKG +Q+KG+DF EIF+PVVKM+SIR++LGLA  L+LE+EQLDVKTAFL
Sbjct: 230  KLVKR-KARLVVKGCHQKKGIDFDEIFAPVVKMTSIRMILGLATCLNLELEQLDVKTAFL 288

Query: 823  HGDLHEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLAS 644
            HGDLHEEIYMEQPEGF  KGKE  VC+LKKSLYGLKQAPRQWY KFDSFM N  Y R  +
Sbjct: 289  HGDLHEEIYMEQPEGFEVKGKENFVCKLKKSLYGLKQAPRQWYHKFDSFMSNNEYKRTTA 348

Query: 643  DHCVYIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMS 464
            D CVY +++  G+FIIL +YVDDMLIVGQD+  I +LK++LS SF+MKDLG A+QILGM 
Sbjct: 349  DPCVYFRKFSEGNFIILCLYVDDMLIVGQDVEMICRLKEDLSKSFDMKDLGPAKQILGME 408

Query: 463  ISRDRKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKA 284
            I+RDRK  +LW+SQE+YIE+VLERF+M+ AKPV++PLA+HFKLS + CP+TE EKE M  
Sbjct: 409  IARDRKAGKLWLSQENYIERVLERFNMKNAKPVNTPLAAHFKLSKRCCPTTEKEKESMSH 468

Query: 283  VPYASAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCF 104
            +PY+S VGSLMYAMVCTRPDIAHAVG+VSR+++NP K HW AVKWI+RYLRGT+  +LCF
Sbjct: 469  IPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYLANPSKVHWEAVKWILRYLRGTSNLSLCF 528

Query: 103  GDRSHRLVCYSDADWAGDVDTRRSTSGYLVTFA 5
            G     L  ++DAD AGD+D R+STSGYL  FA
Sbjct: 529  GGGEPILEGFTDADMAGDLDNRKSTSGYLFKFA 561


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score =  654 bits (1686), Expect = 0.0
 Identities = 333/559 (59%), Positives = 410/559 (73%), Gaps = 14/559 (2%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQ-- 1463
            FGCRAFAH+PK++R+KLD KS  CI++GY  ++FG+RLWDP  KKV RSRDVVF E +  
Sbjct: 651  FGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVR 710

Query: 1462 TIEDI-KKEKGQVKPS-----------NDGGNVRDDIIVPSPGEGQVQXXXXXXXAPTED 1319
            T  D+ +K K  + P+               +  D++       G+V           E+
Sbjct: 711  TAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEE 770

Query: 1318 IDHGDVGEQSPQQAPAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQK 1139
            ++H   GE+  Q        +RRS+R R  S RY S EY+L++D  EPES +EV    +K
Sbjct: 771  VEHPTQGEEQHQP-------LRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEK 823

Query: 1138 QEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGF 959
             + ++AMQ+EM+SL+KN TY LV+LP GKR LK +WVF+LK++ +    RYKARLVVKGF
Sbjct: 824  NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 958  NQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEG 779
             Q+KG+DF EIFSPVVKM+SIR +L LAASLDLE+EQLDVKTAFLHGDL EEIYMEQPEG
Sbjct: 884  EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 778  FAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFI 599
            F   GK+ +VC+L KSLYGLKQAPRQWY KFDSFMK+Q Y +  SD CVY KR+   +FI
Sbjct: 944  FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

Query: 598  ILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQE 419
            ILL+YVDDMLIVG+D   I KLK +LS SF+MKDLG A+QILGM I R+R +R+LW+SQE
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063

Query: 418  SYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMV 239
             YIE+VLERF+M+ AKPVS+PLA H KLS + CP+T  EK  M  VPY+SAVGSLMYAMV
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMV 1123

Query: 238  CTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADW 59
            CTRPDIAHAVGVVSRF+ NPGKEHW AVKWI+RYLRGTT   LCFG     L  Y+DAD 
Sbjct: 1124 CTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADM 1183

Query: 58   AGDVDTRRSTSGYLVTFAG 2
            AGD+D R+S++GYL TF+G
Sbjct: 1184 AGDIDNRKSSTGYLFTFSG 1202


>gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
            capsularis]
          Length = 1500

 Score =  652 bits (1681), Expect = 0.0
 Identities = 333/552 (60%), Positives = 411/552 (74%), Gaps = 7/552 (1%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF H+PK++RSKLD K   CI++GY  ++FG+R WDPE K + RSRDVVF E +TI
Sbjct: 763  FGCKAFLHVPKEQRSKLDSKVTPCIFVGYGGEEFGYRFWDPEKKNIVRSRDVVFHEHETI 822

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXAPTEDIDHGD----VGEQS 1289
             D +K++   +  +D     DD + P+               P    D GD    VG + 
Sbjct: 823  ADFEKKEKTSRVVHD-----DDDLTPTT------------VPPRRATDGGDEQDAVGIEQ 865

Query: 1288 PQQAPAAT---PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAM 1118
             +Q P      P +RRS R   PST+Y S E++LLTD GEPES+R+V+ +  KQ WLEAM
Sbjct: 866  GEQPPLPENNEPQLRRSARGNIPSTKYPSSEFVLLTDDGEPESFRDVQSTSDKQRWLEAM 925

Query: 1117 QDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVD 938
            Q+EMDSL+KN TY+LV+LP GKR LKN+WVF+LK++ N    RYK  LVVKGF Q+  +D
Sbjct: 926  QEEMDSLQKNGTYELVELPKGKRPLKNKWVFKLKKDGNKLV-RYKTCLVVKGFAQKACID 984

Query: 937  FQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGKE 758
            F EIFSPVVKMSSIRVVLGLAASL+LEIEQLDVKTAFLHGDL EEIYM+QPEGF  KGKE
Sbjct: 985  FDEIFSPVVKMSSIRVVLGLAASLNLEIEQLDVKTAFLHGDLQEEIYMDQPEGFKVKGKE 1044

Query: 757  KLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYVD 578
             +VCRLKKSLYGLKQA RQWY+KFDSFM +  + R A+D CVY + +   +FIILL+YVD
Sbjct: 1045 HMVCRLKKSLYGLKQALRQWYKKFDSFMVSHLFKRTATDPCVYFRSF-GNNFIILLLYVD 1103

Query: 577  DMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKVL 398
            DMLIVGQD+  I KLK +LS SF+MKDLG A+QILGM I RDRK  +LW+SQE Y+E++L
Sbjct: 1104 DMLIVGQDVELISKLKDDLSRSFDMKDLGPAKQILGMDIIRDRKAGKLWLSQEKYVERIL 1163

Query: 397  ERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDIA 218
            +RF+MQ AK VS+PLA+HFKL+ + CP +E +K+EM  + Y+S VGSLMY MVCTRPDIA
Sbjct: 1164 KRFNMQDAKSVSTPLANHFKLTKKSCPVSEKKKDEMAVILYSSVVGSLMYLMVCTRPDIA 1223

Query: 217  HAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDTR 38
            HAVGV+SRF+SNPGK HW AVKWI RYLRGT+K  L F      L  ++DAD AGD+D+R
Sbjct: 1224 HAVGVMSRFLSNPGKVHWEAVKWIFRYLRGTSKMCLSFETSQTILEGFTDADMAGDLDSR 1283

Query: 37   RSTSGYLVTFAG 2
            +STSGY+ TFAG
Sbjct: 1284 KSTSGYIFTFAG 1295


>ref|XP_017609491.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
            1-94 [Gossypium arboreum]
          Length = 1184

 Score =  636 bits (1641), Expect = 0.0
 Identities = 322/521 (61%), Positives = 392/521 (75%), Gaps = 19/521 (3%)
 Frame = -3

Query: 1507 KKVFRSRDVVFMEDQTIEDIKK-EKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXA 1331
            KK+ RSRDVVF+EDQTI+DI K EK   + S D  +V    +  SP              
Sbjct: 549  KKLVRSRDVVFIEDQTIDDIDKTEKVDSQGSGDLIDVNPVPLDSSPD------------- 595

Query: 1330 PTEDIDHGDVGEQ----------------SPQQAPAATPVV--RRSDRDRHPSTRYSSQE 1205
            P +D  HGDV                     QQAP A P V  RRS RDR  S +YS  E
Sbjct: 596  PIQDDVHGDVSGDHQTIGDFATPIDDVVNDQQQAPIAPPAVPLRRSSRDRRSSVKYSPDE 655

Query: 1204 YILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVF 1025
            Y+LLTD GEP  Y E  +S+ K +W+EAM+D++ SL +NHT++LVKLP GKRALKNRWV+
Sbjct: 656  YVLLTDGGEPGCYEEAMESECKDQWVEAMKDKLQSLHENHTFELVKLPKGKRALKNRWVY 715

Query: 1024 RLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQL 845
            RLKQEE  + PRYKARLVVKG+ Q+KGVDF+EIFSPVVKMSSIR +L LAA  DLE+EQ+
Sbjct: 716  RLKQEEKSSSPRYKARLVVKGYTQKKGVDFEEIFSPVVKMSSIRTILSLAACYDLEVEQM 775

Query: 844  DVKTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQ 665
            DVK AFLHGDL +E+YMEQPEGF  + KE  VCRLKKSLYGLKQAPRQWY+KF+S M  Q
Sbjct: 776  DVKIAFLHGDLEDELYMEQPEGFVAQRKEDYVCRLKKSLYGLKQAPRQWYKKFESVMGEQ 835

Query: 664  AYDRLASDHCVYIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSA 485
            +Y +  SDHCV++K++   DFIILL+YVDDMLIVGQ+ S+IEKLK+ELS SF MKDLG A
Sbjct: 836  SYKKTTSDHCVFVKKFSGDDFIILLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPA 895

Query: 484  RQILGMSISRDRKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEI 305
            +QILG+ ++RDRK ++LW+SQE YIEKVL++FSM KAK V++P A HF+LS +  PSTE 
Sbjct: 896  KQILGIRLTRDRKAKKLWLSQERYIEKVLQKFSMDKAKAVNTPFAMHFRLSVKHSPSTEK 955

Query: 304  EKEEMKAVPYASAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGT 125
            EKEEM+ +PY+SAVGSLMYAMVCTRPD+A+AVG VSRF+SN G+EHW AVKWIMRYLRGT
Sbjct: 956  EKEEMQKIPYSSAVGSLMYAMVCTRPDLAYAVGTVSRFLSNLGREHWNAVKWIMRYLRGT 1015

Query: 124  TKANLCFGDRSHRLVCYSDADWAGDVDTRRSTSGYLVTFAG 2
            +   LCFG+     V Y+D+D AGD+D+RRSTSGYL+T+AG
Sbjct: 1016 SNMKLCFGNEKPVTVGYTDSDMAGDIDSRRSTSGYLITYAG 1056


>ref|XP_013746494.2| uncharacterized protein BNAC09G10640D [Brassica napus]
          Length = 1347

 Score =  625 bits (1612), Expect = 0.0
 Identities = 324/553 (58%), Positives = 396/553 (71%), Gaps = 8/553 (1%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF HIPK                                +K+ RSRDVVFMEDQTI
Sbjct: 703  FGCKAFVHIPK--------------------------------RKLVRSRDVVFMEDQTI 730

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPG-----EGQVQXXXXXXXAPTEDIDHGDVGEQ 1292
            +DI K K   KP+     + D    PS       E +VQ       AP  +   GD G+ 
Sbjct: 731  KDIDKSK---KPTQIFEGLIDTEATPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDD 787

Query: 1291 SPQQAPAAT---PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEA 1121
              +  PAA     +VRRS+R   PSTRY   EY+LLTD GEPESY E  + + K +W  A
Sbjct: 788  HGE-TPAAENQPTIVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGA 846

Query: 1120 MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 941
            M +EMDS E+NHT++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+
Sbjct: 847  MDEEMDSFEENHTFELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGI 906

Query: 940  DFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGK 761
            D+ EIFSPVVKMSSIRVVLGLAASLDLE+EQ+DVKTAFLHGDL EEIYMEQPEG+ +KGK
Sbjct: 907  DYDEIFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLEEEIYMEQPEGYVQKGK 966

Query: 760  EKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYV 581
            E LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV++K +   DFIILL+YV
Sbjct: 967  ENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYV 1026

Query: 580  DDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKV 401
            DDMLIVG++M +I++LK++LS SF MKD+G A+QILGM I RDR  + + +SQE YIEKV
Sbjct: 1027 DDMLIVGRNMDRIKELKEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKV 1086

Query: 400  LERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDI 221
            L+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYASAVGSLMYAMVCTRPD+
Sbjct: 1087 LKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDL 1146

Query: 220  AHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDT 41
            A+AVGVVSRF+SNPG+EHW AVKWI+RYLRGT+   + FG +   LV Y+D+D +GD D+
Sbjct: 1147 AYAVGVVSRFLSNPGREHWNAVKWILRYLRGTSNLKITFGGKKPLLVSYTDSDMSGDADS 1206

Query: 40   RRSTSGYLVTFAG 2
             +STSGYLVTFAG
Sbjct: 1207 SKSTSGYLVTFAG 1219


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  622 bits (1604), Expect = 0.0
 Identities = 322/574 (56%), Positives = 404/574 (70%), Gaps = 29/574 (5%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF HIPKDERSKLD K+R C+++GY  D+ G++ +D   KK+ RS DVVFMED TI
Sbjct: 628  FGCKAFVHIPKDERSKLDAKTRPCVFIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTI 687

Query: 1456 EDIKKEKGQVKPSNDGGNVRD-------------------------DIIVPSPGEGQV-- 1358
            +DI  EK     S   G++ D                         D+  P+  E +   
Sbjct: 688  QDI--EKTNPMESQHSGDLIDLDPAPLTNLPTQVEDGAHDDQHDMGDVETPTQVEDETHD 745

Query: 1357 -QXXXXXXXAPTEDIDHGDVGEQSPQ-QAPAATPVVRRSDRDRHPSTRYSSQEYILLTDA 1184
             Q        PT+     DV EQSP  +AP+  P+ RRS RDRHPSTRYS  +Y+LLTD 
Sbjct: 746  DQHDMGDVETPTQVEVDDDVHEQSPTAEAPSDIPL-RRSTRDRHPSTRYSVDDYVLLTDE 804

Query: 1183 GEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEEN 1004
            GEPESY E    + K +W++AM+DEM+SL +NH+++LVKLP GKRALKNRWV+R+KQEE+
Sbjct: 805  GEPESYVEAMKDENKMKWVDAMRDEMESLHENHSFELVKLPKGKRALKNRWVYRVKQEEH 864

Query: 1003 GAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFL 824
             ++PRYKARLVVK    ++                         S DLEI+Q+DVKTAFL
Sbjct: 865  TSQPRYKARLVVKRVQSKE-------------------------SFDLEIQQMDVKTAFL 899

Query: 823  HGDLHEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLAS 644
            HGDL +EIYMEQPEGF  KGKE  VC+LKKSLYGLKQAPRQWY+KF+S M  Q Y +  S
Sbjct: 900  HGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQWYKKFESVMGEQGYRKTTS 959

Query: 643  DHCVYIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMS 464
            DHCV+++++   DF+ILL+YVDD+LIV +++S+I+ LKK+LS SF MKDLG  ++ILG+ 
Sbjct: 960  DHCVFVQKFSDDDFVILLLYVDDILIVCRNVSRIDNLKKQLSKSFAMKDLGPVKRILGIR 1019

Query: 463  ISRDRKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKA 284
            I RDR +++L + QE YIEKV  RF+M K K VSSPLASHFKLSS+  PST+ EKE+M+ 
Sbjct: 1020 IERDRASKKLCMLQEQYIEKVFARFNMSKFKVVSSPLASHFKLSSRHSPSTDKEKEDMRR 1079

Query: 283  VPYASAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCF 104
            VPYASA+GSLMYAMVCTRPDIA+AVGVVSRF+SNPG+ HW AVKWIMRYLRGT+K  L F
Sbjct: 1080 VPYASAIGSLMYAMVCTRPDIAYAVGVVSRFLSNPGRHHWEAVKWIMRYLRGTSKLKLTF 1139

Query: 103  GDRSHRLVCYSDADWAGDVDTRRSTSGYLVTFAG 2
            G     LV Y+D+D AGDVD R+STSGYL+TF+G
Sbjct: 1140 GSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSG 1173


>dbj|GAU39612.1| hypothetical protein TSUD_276520 [Trifolium subterraneum]
          Length = 1403

 Score =  622 bits (1605), Expect = 0.0
 Identities = 314/554 (56%), Positives = 406/554 (73%), Gaps = 23/554 (4%)
 Frame = -3

Query: 1594 SKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTIEDIKK-EKGQVKPS 1418
            S +  ++   I++GY  D+FG++ +DP  KK+ RSRDVVFM+DQTIEDI K EK   K  
Sbjct: 415  SWMQSQNNLSIFIGYGKDEFGYKFYDPLWKKLIRSRDVVFMKDQTIEDIDKVEKTTCKKD 474

Query: 1417 NDGGNVRDDIIVPSPG----EGQVQXXXXXXXAPTEDIDHGDVGEQ-------------- 1292
                N+ D + +P        G VQ        P E +D   +GE+              
Sbjct: 475  VTLSNI-DSVRLPVHNLDTIGGDVQNGE-----PHEYVDDQQIGEEVNIPANNDEENDMS 528

Query: 1291 ---SPQQAPAATPV-VRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLE 1124
               +  +AP ++ V +RRS++ R PSTRY+S EY+ L D GEP+ ++++ +SD+ Q+W++
Sbjct: 529  HDDNLGEAPESSQVQLRRSNKQRQPSTRYNSDEYVTLNDEGEPKYFQDIMESDENQKWMD 588

Query: 1123 AMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKG 944
            AM +EM SL  NHTYDLV+LP G++AL+NRW++R+K E N   PR KARLVVKGF QRKG
Sbjct: 589  AMNNEMKSLHDNHTYDLVELPKGEKALENRWIYRVKHESNSGSPRCKARLVVKGFRQRKG 648

Query: 943  VDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKG 764
            VDF EIFSPVVKMSSIR VL LAA+LDLE+EQ+DVKT FLHGDL EEIYM+QP+GF  KG
Sbjct: 649  VDFNEIFSPVVKMSSIRTVLALAATLDLEVEQMDVKTTFLHGDLEEEIYMKQPDGFLVKG 708

Query: 763  KEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIY 584
            KE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y +  SD CV+++++ + DFII+L+Y
Sbjct: 709  KEDYVCRLRKSLYGLKQAPRQWYKKFESVMSEQGYKKTTSDCCVFVRKFSNDDFIIILLY 768

Query: 583  VDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEK 404
            VD MLIVG+++S I+KL K+L  S  MKDLG+A+QILG+ I RDRK ++LW+SQE YI++
Sbjct: 769  VDHMLIVGKNISNIDKLMKQLGESIAMKDLGAAKQILGIRIMRDRKEKKLWMSQEHYIKR 828

Query: 403  VLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPD 224
            VL+RF M+ +K VS+PL +HFKLSSQQ PS+E E  +MK VPY S VGSLMYA+VCTR D
Sbjct: 829  VLQRFQMENSKAVSTPLDTHFKLSSQQSPSSEDETFDMKRVPYTSDVGSLMYAIVCTRSD 888

Query: 223  IAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVD 44
            IAH VG VSRF+SNPG+EHW AVKWI+RYLRGT    LCFG+    L  YSD+D AGD+D
Sbjct: 889  IAHIVGTVSRFLSNPGREHWDAVKWILRYLRGTICMRLCFGEDKPTLEGYSDSDMAGDID 948

Query: 43   TRRSTSGYLVTFAG 2
            +R+STSGY++ FAG
Sbjct: 949  SRKSTSGYMIKFAG 962


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  617 bits (1590), Expect = 0.0
 Identities = 308/505 (60%), Positives = 382/505 (75%), Gaps = 3/505 (0%)
 Frame = -3

Query: 1507 KKVFRSRDVVFMEDQTIEDIKK-EKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXA 1331
            KK  RSRDV FMEDQTIEDI K EK   +  N   NV   +      +   Q        
Sbjct: 651  KKAVRSRDVKFMEDQTIEDIDKTEKITSETDNRLSNVDPVLSDEQHDDVDDQQLGDAFDV 710

Query: 1330 PTEDID--HGDVGEQSPQQAPAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREV 1157
            P +D +  HG   ++    AP    V  R         RY S +Y+ LTD GEPE Y E 
Sbjct: 711  PIDDSEEEHGMSQDEDLGDAPEPPQVQIR---------RYPSDDYVTLTDEGEPECYLEA 761

Query: 1156 EDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKAR 977
             +S++K++WL+AMQDEM SL  NHT+DLVKLP  K+AL+NRW++R+KQE N   PRYKAR
Sbjct: 762  MESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIYRVKQESNSTSPRYKAR 821

Query: 976  LVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIY 797
            LVVKGF QRKG+DF EIFSPVVKMSSIR+VL LAA+LDLE+EQ+DVKTAFLHGDL EEIY
Sbjct: 822  LVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIY 881

Query: 796  MEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRY 617
            M+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y +  SDHCV++K++
Sbjct: 882  MKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKF 941

Query: 616  PSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRR 437
             + DFIILL+YVDD+LIVG+D+S I +LKK+LS SF MKD+G+A+QILG+ I RDR+ ++
Sbjct: 942  ANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKK 1001

Query: 436  LWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGS 257
            LW+SQE+Y+++VL+RF M+ AK VS+PLA+HFKLS++Q PS E EK +M+ +PYASAVGS
Sbjct: 1002 LWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGS 1061

Query: 256  LMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVC 77
            LMYAMVCTRPDIAH VG VSRF+SNPG+EHW AVKWI+RYLRGTT   LCFG     LV 
Sbjct: 1062 LMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFGGDKPTLVG 1121

Query: 76   YSDADWAGDVDTRRSTSGYLVTFAG 2
            Y+D+D  GD+D+RRSTSGY++ FAG
Sbjct: 1122 YTDSDMGGDIDSRRSTSGYVIKFAG 1146


>gb|KYP48282.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 663

 Score =  588 bits (1515), Expect = 0.0
 Identities = 302/542 (55%), Positives = 380/542 (70%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC A+ HI    R+KLD KS+ C  +GY  D+FG+RLWD E KK+ RSRDV+F E    
Sbjct: 64   FGCVAYVHISDQGRNKLDPKSKKCTLIGYGEDEFGYRLWDDENKKMIRSRDVIFNERVMY 123

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPGEGQVQXXXXXXXAPTEDIDHGDVGEQSPQQA 1277
            +D        + S D  N      V +  +   +        P E  +     +QS    
Sbjct: 124  KD--------RHSTDASNSEKSRPVYAEVDDVPESPIVETPQPEESTEQS-CEQQSDTPE 174

Query: 1276 PAATPVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSL 1097
            P+ +  VRRS R   P+ RY +  Y+LLTD GEPE Y E   +    +W  AM+DEM SL
Sbjct: 175  PSTSAPVRRSSRPHVPNRRYMN--YMLLTDGGEPEDYDEACQATDASKWEHAMKDEMKSL 232

Query: 1096 EKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSP 917
              N T++LV+LP  K+AL N+WV+R+K+E +G+K RYKARLVVKGF Q++GVD+ EI+SP
Sbjct: 233  ISNQTWELVELPRDKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEGVDYTEIYSP 291

Query: 916  VVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCRLK 737
            VVK+++IR VL + AS +L +EQLDVKTAFLHGDL EEIYM QPEGF+EKGKE +VCRLK
Sbjct: 292  VVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDEEIYMHQPEGFSEKGKENMVCRLK 351

Query: 736  KSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYVDDMLIVGQ 557
            KSLYGLKQAPRQWY+KFD FM  + + +  +DHC Y KRY S  +IILL+YVDDML+ G 
Sbjct: 352  KSLYGLKQAPRQWYKKFDGFMHKEGFHKCNADHCCYFKRYKSS-YIILLLYVDDMLVAGL 410

Query: 556  DMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKVLERFSMQK 377
            DM +I  LK+ LS  F+MKDLG A++ILGM I+RD++   L +SQ  YI +VL+RF+M  
Sbjct: 411  DMDEIRSLKQRLSREFDMKDLGPAKKILGMQITRDKQRGILQLSQAEYINRVLQRFNMGD 470

Query: 376  AKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDIAHAVGVVS 197
            AKPVS+PLASHF+LS  Q P TE E+  M  VPYASA+GSLMYAMVCTRPDI HAVGVVS
Sbjct: 471  AKPVSTPLASHFRLSKDQSPQTEEERYFMAKVPYASAIGSLMYAMVCTRPDIGHAVGVVS 530

Query: 196  RFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDTRRSTSGYL 17
            RF+SNPGK HW AVKWI+RYLRGTT+  L FG    ++  Y DAD+ G+VD RRST+GY+
Sbjct: 531  RFMSNPGKAHWEAVKWILRYLRGTTERCLHFGKGKIKVQGYVDADYGGEVDHRRSTTGYI 590

Query: 16   VT 11
             T
Sbjct: 591  FT 592


>gb|KYP50580.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 478

 Score =  580 bits (1494), Expect = 0.0
 Identities = 275/399 (68%), Positives = 332/399 (83%)
 Frame = -3

Query: 1198 LLTDAGEPESYREVEDSDQKQEWLEAMQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRL 1019
            +LTD GEPE Y E  +S++KQ+WL+AMQDEM SL  NHTYDLVKLP GKRAL+NRW+F++
Sbjct: 1    MLTDEGEPECYEEAIESEEKQKWLDAMQDEMKSLHDNHTYDLVKLPKGKRALENRWIFKV 60

Query: 1018 KQEENGAKPRYKARLVVKGFNQRKGVDFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDV 839
            KQE N   P YKARLVVKGF QRKGVDF EIFSPVV+MSSIR +L LA +LDLE+E++DV
Sbjct: 61   KQESNSTSPIYKARLVVKGFRQRKGVDFNEIFSPVVRMSSIRTMLSLATTLDLEVEKMDV 120

Query: 838  KTAFLHGDLHEEIYMEQPEGFAEKGKEKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAY 659
            KT FLHGDL EEIYM+QP+GF  +GKE  VCRL+KSLYGLKQAPRQWY+KF+S M  Q Y
Sbjct: 121  KTIFLHGDLEEEIYMKQPDGFLIEGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCEQDY 180

Query: 658  DRLASDHCVYIKRYPSGDFIILLIYVDDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQ 479
             +  SDHCV+++++   DFIILL+YVDDMLIVG+D+SKI++LKK+L  SF MKD+G+A++
Sbjct: 181  KKTTSDHCVFVRKFSDDDFIILLLYVDDMLIVGKDVSKIDRLKKQLGESFSMKDMGAAKK 240

Query: 478  ILGMSISRDRKTRRLWISQESYIEKVLERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEK 299
            ILG+SI RDRK ++LW+SQE YI+ VL+RF M+  K VS+PLA+HFKLS +QCPS E+EK
Sbjct: 241  ILGISIIRDRKDKKLWLSQEHYIQNVLQRFHMENVKAVSTPLAAHFKLSVKQCPSNEVEK 300

Query: 298  EEMKAVPYASAVGSLMYAMVCTRPDIAHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTK 119
              M  VPYA AVGSLMYAMVCTRPDIAHAVG VSRF+SNPG+EHW AVKWI+RYLRGT+ 
Sbjct: 301  INMSRVPYAYAVGSLMYAMVCTRPDIAHAVGTVSRFLSNPGREHWNAVKWILRYLRGTSG 360

Query: 118  ANLCFGDRSHRLVCYSDADWAGDVDTRRSTSGYLVTFAG 2
              L FG     LV YSD+D AGD+D+R+STSGYLV FAG
Sbjct: 361  LKLYFGGDKPTLVGYSDSDMAGDIDSRKSTSGYLVKFAG 399


>ref|XP_022549646.1| uncharacterized protein LOC111201676, partial [Brassica napus]
          Length = 2325

 Score =  625 bits (1611), Expect = 0.0
 Identities = 325/553 (58%), Positives = 397/553 (71%), Gaps = 8/553 (1%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF HIPK                                +K+ RSRDVVFMEDQTI
Sbjct: 1681 FGCKAFVHIPK--------------------------------RKLVRSRDVVFMEDQTI 1708

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPG-----EGQVQXXXXXXXAPTEDIDHGDVGEQ 1292
            +DI K K   KP+     + D    PS       E +VQ       AP  +   GD G+ 
Sbjct: 1709 KDIDKSK---KPTQIFEGLIDTEATPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDD 1765

Query: 1291 SPQQAPAAT---PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEA 1121
              +  PAA     +VRRS+R   PSTRY   EY+LLTD GEPESY E  + + K +W  A
Sbjct: 1766 HGE-TPAAENQPTIVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGA 1824

Query: 1120 MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 941
            M +EMDS E+NHT++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+
Sbjct: 1825 MDEEMDSFEENHTFELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGI 1884

Query: 940  DFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGK 761
            D+ EIFSPVVKMSSIRVVLGLAASLDLE+EQ+DVKTAFLHG+L EEIYMEQPEG+ +KGK
Sbjct: 1885 DYDEIFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGNLEEEIYMEQPEGYVQKGK 1944

Query: 760  EKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYV 581
            E LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV++K +   DFIILL+YV
Sbjct: 1945 ENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYV 2004

Query: 580  DDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKV 401
            DDMLIVG++M KI++LK++LS SF MKD+G A+QILGM I RDR  + + +SQE YIEKV
Sbjct: 2005 DDMLIVGRNMDKIKELKEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKV 2064

Query: 400  LERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDI 221
            L+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYASAVGSLMYAMVCTRPD+
Sbjct: 2065 LKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDL 2124

Query: 220  AHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDT 41
            A+AVGVVSRFISNPG+EHW AVKWI+RYLRGT+   + FG +   LV ++D+D +GDVD+
Sbjct: 2125 AYAVGVVSRFISNPGREHWNAVKWILRYLRGTSDLKITFGGKKPLLVSFTDSDMSGDVDS 2184

Query: 40   RRSTSGYLVTFAG 2
             +STSGYLVTFAG
Sbjct: 2185 SKSTSGYLVTFAG 2197



 Score =  624 bits (1610), Expect = 0.0
 Identities = 324/553 (58%), Positives = 396/553 (71%), Gaps = 8/553 (1%)
 Frame = -3

Query: 1636 FGCRAFAHIPKDERSKLDGKSRSCIYLGYSPDQFGFRLWDPEAKKVFRSRDVVFMEDQTI 1457
            FGC+AF HIPK                                +K+ RSRDVVFMEDQTI
Sbjct: 525  FGCKAFVHIPK--------------------------------RKLVRSRDVVFMEDQTI 552

Query: 1456 EDIKKEKGQVKPSNDGGNVRDDIIVPSPG-----EGQVQXXXXXXXAPTEDIDHGDVGEQ 1292
            +DI K K   KP+     + D    PS       E +VQ       AP  +   GD G+ 
Sbjct: 553  KDIDKSK---KPTQIFEGLIDTEATPSTSVHGEVEVEVQDNTPSADAPAHEDGSGDHGDD 609

Query: 1291 SPQQAPAAT---PVVRRSDRDRHPSTRYSSQEYILLTDAGEPESYREVEDSDQKQEWLEA 1121
              +  PAA     +VRRS+R   PSTRY   EY+LLTD GEPESY E  + + K +W  A
Sbjct: 610  HGE-TPAAENQPTIVRRSERGLKPSTRYDPSEYVLLTDGGEPESYDEALEDEHKDKWFGA 668

Query: 1120 MQDEMDSLEKNHTYDLVKLPNGKRALKNRWVFRLKQEENGAKPRYKARLVVKGFNQRKGV 941
            M +EMDS E+NHT++LV+LP GK+AL N+WV+R+K E++   PR+KARLVVKG++Q+KG+
Sbjct: 669  MDEEMDSFEENHTFELVELPKGKKALLNKWVYRIKHEDDNLPPRHKARLVVKGYSQKKGI 728

Query: 940  DFQEIFSPVVKMSSIRVVLGLAASLDLEIEQLDVKTAFLHGDLHEEIYMEQPEGFAEKGK 761
            D+ EIFSPVVKMSSIRVVLGLAASLDLE+EQ+DVKTAFLHG+L EEIYMEQPEG+ +KGK
Sbjct: 729  DYDEIFSPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGNLEEEIYMEQPEGYVQKGK 788

Query: 760  EKLVCRLKKSLYGLKQAPRQWYRKFDSFMKNQAYDRLASDHCVYIKRYPSGDFIILLIYV 581
            E LVCRLKKSLYGLKQAPRQWY KF S M    Y    SDHCV++K +   DFIILL+YV
Sbjct: 789  ENLVCRLKKSLYGLKQAPRQWYMKFKSVMGEHGYAETDSDHCVFVKVFGEDDFIILLLYV 848

Query: 580  DDMLIVGQDMSKIEKLKKELSMSFEMKDLGSARQILGMSISRDRKTRRLWISQESYIEKV 401
            DDMLIVG++M KI++LK++LS SF MKD+G A+QILGM I RDR  + + +SQE YIEKV
Sbjct: 849  DDMLIVGRNMDKIKELKEQLSESFAMKDMGPAKQILGMRIIRDRGEKLIHLSQEKYIEKV 908

Query: 400  LERFSMQKAKPVSSPLASHFKLSSQQCPSTEIEKEEMKAVPYASAVGSLMYAMVCTRPDI 221
            L+RF M K+K +S+PLA H +LSSQQ P T  EKE+M  VPYASAVGSLMYAMVCTRPD+
Sbjct: 909  LKRFHMDKSKVLSTPLAPHLRLSSQQSPKTYAEKEDMAKVPYASAVGSLMYAMVCTRPDL 968

Query: 220  AHAVGVVSRFISNPGKEHWTAVKWIMRYLRGTTKANLCFGDRSHRLVCYSDADWAGDVDT 41
            A+AVGVVSRF+SNPG+EHW AVKWI+RYLRGT+   + FG +   LV Y+D+D +GD D+
Sbjct: 969  AYAVGVVSRFLSNPGREHWNAVKWILRYLRGTSDLKITFGGKKSLLVSYTDSDMSGDADS 1028

Query: 40   RRSTSGYLVTFAG 2
             +STSGYLVTFAG
Sbjct: 1029 SKSTSGYLVTFAG 1041