BLASTX nr result
ID: Ophiopogon27_contig00007294
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00007294
(2584 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDP17738.1| unnamed protein product [Coffea canephora] 97 4e-20
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 95 1e-19
emb|CDP17739.1| unnamed protein product [Coffea canephora] 97 4e-19
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 92 2e-18
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 78 3e-18
gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposo... 86 2e-17
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 86 4e-17
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 84 9e-17
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 84 1e-16
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 84 2e-16
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 74 2e-16
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 74 2e-16
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 73 3e-16
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 73 3e-16
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 73 3e-16
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 73 3e-16
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo... 82 6e-16
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo... 82 6e-16
gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposo... 81 1e-15
gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposo... 81 1e-15
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 97.1 bits (240), Expect(2) = 4e-20
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 4/176 (2%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLF----HQVEQEKMCR 2262
VH + P+K SL G+ YFV+FID++SR +WV TMK ++E +K+F +VE + +
Sbjct: 505 VHSDVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRK 564
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLM 2082
I + D G K ++ + ++ N + M + LV+K+ ++
Sbjct: 565 IKILRTDNGGEY---KSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKVRCML 621
Query: 2081 SSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPA 1914
S+ W +A+ + +++NRL S+AI GK PL+VWS K+ +DYDSLR+F A
Sbjct: 622 SNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTA 677
Score = 32.3 bits (72), Expect(2) = 4e-20
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 1893 KDCVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL 1780
K +F+G V GY+LWY ++K I+S + FDE+ +L
Sbjct: 691 KKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVML 729
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 95.1 bits (235), Expect(2) = 1e-19
Identities = 60/177 (33%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLF----HQVEQEKMCR 2262
VH + P+K S+ G+ YFV+F+D++SR +WV TMK +N+ +++F +VE +
Sbjct: 419 VHSDVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRK 478
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILP----KEQRICN*MRWSMKRALVKKM 2094
I + D G + S P + N+ D I+ ++ N + M + LV+K+
Sbjct: 479 IKVLQTDNGGEYK-----SDPFL--NVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKV 531
Query: 2093 HYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFG 1923
++S+ + W +A+ + +++NRL S+AI+GK PL+VWS K +DYDSL VFG
Sbjct: 532 CCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFG 588
Score = 33.1 bits (74), Expect(2) = 1e-19
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = -2
Query: 1893 KDCVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHVESS--QAKTILQQ 1723
K +F+G V GY+LW + K I+S + FDE+ +LK + +S+ Q + + +Q
Sbjct: 605 KKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTPQQVECVRKQ 664
Query: 1722 VEID 1711
VE +
Sbjct: 665 VEFE 668
>emb|CDP17739.1| unnamed protein product [Coffea canephora]
Length = 435
Score = 96.7 bits (239), Expect(2) = 4e-19
Identities = 58/172 (33%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLF----HQVEQEKMCR 2262
VH + P+K SL G+ YFV+FID++SR +WV TMK ++E +++F +VE + +
Sbjct: 113 VHSNVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRK 172
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLM 2082
I + D G + + + + T+ Q+ N + M + LV+K+H ++
Sbjct: 173 IKILRTDNGGEYKSDPFQKIGQEC-GIVQHFTVRKTPQQ--NGVSERMNKTLVEKVHCML 229
Query: 2081 SSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVF 1926
S+ + W + + + +++NRL S+AI GK PL+VWS K +DYDSLR+F
Sbjct: 230 SNARLGRKFWAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIF 281
Score = 29.6 bits (65), Expect(2) = 4e-19
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -2
Query: 1893 KDCVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL 1780
K +F+G+ V GY+LW ++K I+S + F+E+++L
Sbjct: 299 KKAIFMGLNAGVKGYRLWCLEAKKTIISRDVTFNESAML 337
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 92.0 bits (227), Expect(2) = 2e-18
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLF----HQVEQEKMCR 2262
VH + PSK SL G Y+V+F+D++SR +WV MK ++E + +F ++E + +
Sbjct: 268 VHSDVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRK 327
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
I ++ D G ++ +E + R T+ Q+ N + M R L++
Sbjct: 328 IKHFRTDNGGEYTSDPFKKACEESGIVR-------HFTVKHTPQQ--NGVAERMNRTLLE 378
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
K+ ++S+ W +A+ + ++INRL S+AI GK PL+ W K +DYDSL VFGC
Sbjct: 379 KVRCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYDSLHVFGC 438
Query: 1919 PA 1914
A
Sbjct: 439 TA 440
Score = 31.6 bits (70), Expect(2) = 2e-18
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -2
Query: 1893 KDCVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL 1780
K +F+GI V GY+LW ++K I+S + FDE+++L
Sbjct: 454 KKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTML 492
>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
Length = 876
Score = 77.8 bits (190), Expect(2) = 3e-18
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCR 2262
VH + P++ S+ G YFV+F D++SR +WV MK+++E F +VE + +
Sbjct: 403 VHSDVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRK 462
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
I + D G + ++ + R + P++ + M S L +
Sbjct: 463 IKYLRSDNGTEYTNSQFEKFCEQHGIQR-----HFSVRKTPQQNGVAERMNMS----LTE 513
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
+ L + W + + +CY+INR A++EGK+ +VW+ K + D D+LR+FGC
Sbjct: 514 RARCLQLKAGLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLDNLRIFGC 572
Query: 1919 PASV 1908
P V
Sbjct: 573 PTFV 576
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = -2
Query: 1893 KDCVFVGI-KLVLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHV-ESSQAKTILQQV 1720
K C+FVG K V G+KLW P SK ++LS + VFDE +LK S V ES+ + + +
Sbjct: 591 KKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKEVI 650
Query: 1719 EIDL 1708
+++L
Sbjct: 651 QVEL 654
>gb|KYP38864.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 507
Score = 85.5 bits (210), Expect(2) = 2e-17
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 4/176 (2%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
+H PS+ SL G YF+S ID+YSR W+ K +N+A K F + +E++ R
Sbjct: 106 IHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQTSKR 165
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLM 2082
+ + D G +KE + +A T+ Q+ N + M R L+++ L+
Sbjct: 166 VKRLRTDNGLEFC-SKEFNDYCKAEGIARQYTVRNTPQQ--NGVAERMNRTLLERARCLL 222
Query: 2081 SSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPA 1914
S+ + W +A+ +CY+INR S I+ K P++VWS K ++Y LRVFGC A
Sbjct: 223 SNAGLSRSFWAEAVSTTCYLINRSPSTIIDCKTPIEVWSNK-PANYSLLRVFGCNA 277
Score = 35.0 bits (79), Expect(2) = 2e-17
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 1863 VLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHVESSQAKTILQQVE 1717
V GY++W P + +ILS + +FDE+ + S V K IL+QVE
Sbjct: 302 VKGYRIWSPAERKVILSRDVIFDESHLFYPSLEFTVSGKNQK-ILKQVE 349
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 85.5 bits (210), Expect(2) = 4e-17
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +SL G YFVSFID+YSR +WV +K++++ +F Q+E E +I + D
Sbjct: 492 SPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDN 551
Query: 2237 GATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSSNKANAI 2058
G + + + + T+ Q+ N + M R L+++ ++ +
Sbjct: 552 GGEYIDGEFLAFCKQE-GIVRQFTVAHTPQQ--NGVAERMNRTLLERTRAMLKTAGMAKS 608
Query: 2057 IWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI+ K P+++W K V DY SL VFGCP V
Sbjct: 609 FWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYV 657
Score = 33.9 bits (76), Expect(2) = 4e-17
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHVESSQAKTILQQVE 1717
+ C+F+G V GY+LW P ++ +++S + VF E +L S +S+ +T + Q+E
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN---ELQSEQKNDSTSKETAIVQME 728
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 84.3 bits (207), Expect(2) = 9e-17
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +SL G YFVSFID+YSR +WV +K++++ +F Q+E E +I + D
Sbjct: 492 SPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDN 551
Query: 2237 GATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSSNKANAI 2058
G + + + + T+ Q+ N + M R L+++ ++ +
Sbjct: 552 GGEYVDGEFLAFCKQE-GIVRQFTVAHTPQQ--NGVAERMNRTLLERTRAMLKTAGMAKS 608
Query: 2057 IWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A K +CY+INR S AI+ K P+++W K V DY SL VFGCP V
Sbjct: 609 FWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYV 657
Score = 33.9 bits (76), Expect(2) = 9e-17
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHVESSQAKTILQQVE 1717
+ C+F+G V GY+LW P ++ +++S + VF E +L S +S+ +T + Q+E
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN---ELQSEQKNDSTSKETAIVQME 728
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 84.0 bits (206), Expect(2) = 1e-16
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +SL G YFVSFID+YSR +WV +K++++ +F Q+E E +I + D
Sbjct: 492 SPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDN 551
Query: 2237 GATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSSNKANAI 2058
G + + + + T+ Q+ N + M R L+++ ++ +
Sbjct: 552 GGEYVDGEFLAFCKQE-GIVRQFTVAHTPQQ--NGVAERMNRTLLERTRAMLKTAGMAKS 608
Query: 2057 IWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI+ K P+++W K V DY SL VFGCP V
Sbjct: 609 FWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYV 657
Score = 33.9 bits (76), Expect(2) = 1e-16
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLKLSSSVHVESSQAKTILQQVE 1717
+ C+F+G V GY+LW P ++ +++S + VF E +L S +S+ +T + Q+E
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAEN---ELQSKQKNDSTSKETAIVQME 728
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 83.6 bits (205), Expect(2) = 2e-16
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +SL G YFVSFID+YSR +WV +K++++ +F Q+E E +I + D
Sbjct: 492 SPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDN 551
Query: 2237 GATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSSNKANAI 2058
G + + + + T+ Q+ N + M R L+++ ++ + +
Sbjct: 552 GGEYVDGEFLAFCKQE-GIVRQFTVAHTPQQ--NGVAERMNRTLLERTRAMLKTAEMAKS 608
Query: 2057 IWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S I+ K P+++W K V DY SL VFGCP V
Sbjct: 609 FWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPV-DYSSLHVFGCPVYV 657
Score = 33.9 bits (76), Expect(2) = 2e-16
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 17/78 (21%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILS---------------GNSVFDETSVLKL-SSS 1765
+ C+F+G V GY+LW P ++ +++S +S F ET++L++ S
Sbjct: 672 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFKETAILQIEEKS 731
Query: 1764 VHVESSQAKTILQQVEID 1711
+SS+A+++ ++ E D
Sbjct: 732 KESDSSEAESVHEEQEPD 749
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 74.3 bits (181), Expect(2) = 2e-16
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 327 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 386
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLM 2082
+ + D G ++ + + I+ N + M R ++ K ++
Sbjct: 387 VKILRTDNGME-------FCSKIFKSYCKSEGIVRHYTPQQNGVAERMNRTIISKARCML 439
Query: 2081 SSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPA 1914
S+ W A+ +CY+INR S AI+ K P+KVWS ++Y LRVFGC A
Sbjct: 440 SNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWS-GFPANYSDLRVFGCTA 494
Score = 43.1 bits (100), Expect(2) = 2e-16
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Frame = -2
Query: 1887 CVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTI 1732
C+F+G V GYKLW P++K +++S N VF E+ +L K S++V VES + ++
Sbjct: 510 CIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV 564
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 74.3 bits (181), Expect(2) = 2e-16
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 327 VHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 386
Query: 2261 IADWKEDQGATRR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLM 2082
+ + D G ++ + + I+ N + M R ++ K ++
Sbjct: 387 VKILRTDNGME-------FCSKIFKSYCKSEGIVRHYTPQQNGVAERMNRTIISKARCML 439
Query: 2081 SSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPA 1914
S+ W A+ +CY+INR S AI+ K P+KVWS ++Y LRVFGC A
Sbjct: 440 SNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWS-GFPANYSDLRVFGCTA 494
Score = 43.1 bits (100), Expect(2) = 2e-16
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Frame = -2
Query: 1887 CVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTI 1732
C+F+G V GYKLW P++K +++S N VF E+ +L K S++V VES + ++
Sbjct: 510 CIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV 564
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 73.2 bits (178), Expect(2) = 3e-16
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 404 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 463
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
+ + D G + K + R Y P++ + M R ++
Sbjct: 464 VKILRTDNGMELCSKIFKSYCKSEGIVR-----HYTVPHTPQQNGVAE----RMNRTIIS 514
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
K ++S+ W +A+ +CY+INR S AI+ K P++VWS ++Y LRVFGC
Sbjct: 515 KARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYSDLRVFGC 573
Query: 1919 PA 1914
A
Sbjct: 574 TA 575
Score = 43.5 bits (101), Expect(2) = 3e-16
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Frame = -2
Query: 1887 CVFVG-IKLVLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTILQQVE 1717
C+F+G + V GYKLW P++K +++S N VF E+ +L K S++V VES + ++ QVE
Sbjct: 591 CIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSV--QVE 648
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 73.2 bits (178), Expect(2) = 3e-16
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 702 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 761
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
+ + D G + K + R Y P++ + M R ++
Sbjct: 762 VKILRTDNGMEFCSKIFKSYCKSEGIVR-----HYTVPHTPQQNGVAE----RMNRTIIS 812
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
K L+S+ W +A+ +CY+INR S AI+ K P++VWS ++Y LRVFGC
Sbjct: 813 KARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYSDLRVFGC 871
Query: 1919 PA 1914
A
Sbjct: 872 TA 873
Score = 43.1 bits (100), Expect(2) = 3e-16
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = -2
Query: 1887 CVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTILQQVE 1717
C+F+G V GYKLW P++K +++S N VF E+ +L K S++V VES + ++ QVE
Sbjct: 889 CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVE 946
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 73.2 bits (178), Expect(2) = 3e-16
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 495 VHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 554
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
+ + D G + K + R Y P++ + M R ++
Sbjct: 555 VKILRTDNGMEFCSKIFKSYCKSEGIVR-----HYTVPHTPQQNGVAE----RMNRTIIS 605
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
K L+S+ W +A+ +CY+INR S AI+ K P++VWS ++Y LRVFGC
Sbjct: 606 KARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS-PANYSDLRVFGC 664
Query: 1919 PA 1914
A
Sbjct: 665 TA 666
Score = 43.1 bits (100), Expect(2) = 3e-16
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = -2
Query: 1887 CVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTILQQVE 1717
C+F+G V GYKLW P++K +++S N VF E+ +L K S++V VES + ++ QVE
Sbjct: 682 CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVE 739
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gb|AAM10749.1|AC112514_2 Putative retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 73.2 bits (178), Expect(2) = 3e-16
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Frame = -3
Query: 2429 VHICIQRPSKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFHQ----VEQEKMCR 2262
VH + P++ S G Y ++ +D+YSR +W +K + +A +F + VE++ +
Sbjct: 456 VHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERK 515
Query: 2261 IADWKEDQGAT------RR*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVK 2100
+ + D G + K + R Y P++ + M R ++
Sbjct: 516 VKILRTDNGMDFCSKIFKSYCKSEGIVR-----HYTVPHTPQQNGVAE----RMNRTIIS 566
Query: 2099 KMHYLMSSNKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGC 1920
K ++S+ W +A+ +CY+INR S AI+ K P+KVWS ++Y LRVFGC
Sbjct: 567 KARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGS-PANYSDLRVFGC 625
Query: 1919 PA 1914
A
Sbjct: 626 IA 627
Score = 43.1 bits (100), Expect(2) = 3e-16
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = -2
Query: 1887 CVFVGIKL-VLGYKLWYPKSKCIILSGNSVFDETSVL--KLSSSVHVESSQAKTILQQVE 1717
C+F+G V GYKLW P++K +++S N VF E+ +L K S++V VES + ++ QVE
Sbjct: 643 CIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASV--QVE 700
>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 82.4 bits (202), Expect(2) = 6e-16
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +S+ G YFVSFID+YSR +WV +K++++ +F QVE + RI + D
Sbjct: 491 SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDN 550
Query: 2237 GATR------R*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSS 2076
G K+ + R T+ Q+ N + M R L+++ ++ +
Sbjct: 551 GGEYIDGDFLAFCKQEGIKRQF-------TVAHTPQQ--NGVAERMNRTLLERTRAMLRT 601
Query: 2075 NKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI K P+++WS K S+Y SL VFGCP V
Sbjct: 602 AGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYV 656
Score = 33.1 bits (74), Expect(2) = 6e-16
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLK 1777
+ C+F+G V GY+LW P ++ +++S + VF ET + K
Sbjct: 671 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQK 710
>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 82.4 bits (202), Expect(2) = 6e-16
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +S+ G YFVSFID+YSR +WV +K++++ +F QVE + RI + D
Sbjct: 442 SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDN 501
Query: 2237 GATR------R*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSS 2076
G K+ + R T+ Q+ N + M R L+++ ++ +
Sbjct: 502 GGEYIDGDFLAFCKQEGIKRQF-------TVAHTPQQ--NGVAERMNRTLLERTRAMLRT 552
Query: 2075 NKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI K P+++WS K S+Y SL VFGCP V
Sbjct: 553 AGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYV 607
Score = 33.1 bits (74), Expect(2) = 6e-16
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLK 1777
+ C+F+G V GY+LW P ++ +++S + VF ET + K
Sbjct: 622 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQK 661
>gb|KYP42748.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1305
Score = 81.3 bits (199), Expect(2) = 1e-15
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +S+ G YFVSFID+YSR +WV +K++++ +F QVE + RI + D
Sbjct: 491 SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDN 550
Query: 2237 GATR------R*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSS 2076
G K+ + R T+ Q+ N + M R L+++ ++ +
Sbjct: 551 GGEYIDGDFLAFCKQEGIKRQF-------TVAHTPQQ--NGVAERMNRTLLERTRAMLRT 601
Query: 2075 NKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI K P+++W+ K S+Y SL VFGCP V
Sbjct: 602 AGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGK-PSNYSSLHVFGCPVYV 656
Score = 33.1 bits (74), Expect(2) = 1e-15
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLK 1777
+ C+F+G V GY+LW P ++ +++S + VF ET + K
Sbjct: 671 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQK 710
>gb|KYP67664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1256
Score = 81.3 bits (199), Expect(2) = 1e-15
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Frame = -3
Query: 2405 SKPVSLEGKCYFVSFIDEYSRYMWVATMKRRNEAMKLFH----QVEQEKMCRIADWKEDQ 2238
S +S+ G YFVSFID+YSR +WV +K++++ +F QVE + RI + D
Sbjct: 442 SPEISMGGAKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDN 501
Query: 2237 GATR------R*AKE*SVPRVV*NMAYDDTILPKEQRICN*MRWSMKRALVKKMHYLMSS 2076
G K+ + R T+ Q+ N + M R L+++ ++ +
Sbjct: 502 GGEYIDGDFLAFCKQEGIKRQF-------TVAHTPQQ--NGVAERMNRTLLERTRAMLRT 552
Query: 2075 NKANAIIWTKALKCSCYIINRLSSAAIEGKIPLKVWSRKIVSDYDSLRVFGCPASV 1908
W +A+K +CY+INR S AI K P+++W+ K S+Y SL VFGCP V
Sbjct: 553 AGLAKSFWAEAVKTACYLINRSPSTAIGLKTPMEMWNGK-PSNYSSLHVFGCPVYV 607
Score = 33.1 bits (74), Expect(2) = 1e-15
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -2
Query: 1893 KDCVFVGIK-LVLGYKLWYPKSKCIILSGNSVFDETSVLK 1777
+ C+F+G V GY+LW P ++ +++S + VF ET + K
Sbjct: 622 RKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQK 661