BLASTX nr result
ID: Ophiopogon27_contig00006853
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon27_contig00006853
(781 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera] 120 3e-30
ref|XP_020245280.1| glycine-rich RNA-binding protein 3, mitochon... 122 8e-29
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec... 120 3e-27
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec... 120 3e-27
ref|XP_021818512.1| cleavage and polyadenylation specificity fac... 120 4e-27
ref|XP_020426099.1| cleavage and polyadenylation specificity fac... 119 1e-26
ref|XP_023904095.1| cleavage and polyadenylation specificity fac... 117 5e-26
ref|XP_023904094.1| cleavage and polyadenylation specificity fac... 117 5e-26
gb|POE45696.1| cleavage and polyadenylation specificity factor s... 117 5e-26
ref|XP_024023946.1| cleavage and polyadenylation specificity fac... 115 2e-25
ref|XP_020253325.1| LOW QUALITY PROTEIN: glycine-rich RNA-bindin... 112 4e-25
gb|PON42322.1| Splicing factor-like protein [Parasponia andersonii] 114 4e-25
gb|PON91400.1| Splicing factor-like protein [Trema orientalis] 113 1e-24
gb|PIA51496.1| hypothetical protein AQUCO_01100380v1 [Aquilegia ... 112 1e-24
dbj|GAY43962.1| hypothetical protein CUMW_078620 [Citrus unshiu] 112 1e-24
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 112 1e-24
dbj|GAY43963.1| hypothetical protein CUMW_078630 [Citrus unshiu] 112 1e-24
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 112 1e-24
ref|XP_024041537.1| cleavage and polyadenylation specificity fac... 112 1e-24
ref|XP_021901218.1| cleavage and polyadenylation specificity fac... 112 2e-24
>emb|CAN66828.1| hypothetical protein VITISV_015886 [Vitis vinifera]
Length = 168
Score = 120 bits (301), Expect = 3e-30
Identities = 60/81 (74%), Positives = 73/81 (90%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGEVNHE+ GRSN ASRE ERG+ERD++G SERRH D+
Sbjct: 33 EEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDE 92
Query: 172 KEQDWDRSDRE-RHREDKDGF 231
+EQDW+RSD++ R+RE+KDG+
Sbjct: 93 REQDWERSDKDHRYREEKDGY 113
>ref|XP_020245280.1| glycine-rich RNA-binding protein 3, mitochondrial-like [Asparagus
officinalis]
Length = 421
Score = 122 bits (307), Expect = 8e-29
Identities = 68/123 (55%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
Frame = +1
Query: 1 EEHGRARESSYGGDDGASEYGYGEVNHER-GGRSNASRE-ERGAERDYTGISERRHHDDK 174
EE GR RESSYGGDDGAS+YGYGEVNHER GGRSNASRE ERG++ ERR+ D+K
Sbjct: 295 EEQGRTRESSYGGDDGASDYGYGEVNHERGGGRSNASREKERGSD-------ERRYRDEK 347
Query: 175 EQDWDRSDRERHREDKDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVHGSRSR 354
EQDWDRSDRERHRE+K+G+ ED H RSR
Sbjct: 348 EQDWDRSDRERHREEKEGYRDYRSRDRDYDNEVDWDRGQSSNRSRSRSYMQEDDHRPRSR 407
Query: 355 DAD 363
DAD
Sbjct: 408 DAD 410
>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_010650883.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_010650886.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
ref|XP_019075332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185 isoform X2 [Vitis vinifera]
Length = 650
Score = 120 bits (301), Expect = 3e-27
Identities = 60/81 (74%), Positives = 73/81 (90%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGEVNHE+ GRSN ASRE ERG+ERD++G SERRH D+
Sbjct: 515 EEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDE 574
Query: 172 KEQDWDRSDRE-RHREDKDGF 231
+EQDW+RSD++ R+RE+KDG+
Sbjct: 575 REQDWERSDKDHRYREEKDGY 595
>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
6 isoform X1 [Vitis vinifera]
Length = 656
Score = 120 bits (301), Expect = 3e-27
Identities = 60/81 (74%), Positives = 73/81 (90%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGEVNHE+ GRSN ASRE ERG+ERD++G SERRH D+
Sbjct: 521 EEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHRDE 580
Query: 172 KEQDWDRSDRE-RHREDKDGF 231
+EQDW+RSD++ R+RE+KDG+
Sbjct: 581 REQDWERSDKDHRYREEKDGY 601
>ref|XP_021818512.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X1 [Prunus avium]
ref|XP_021818513.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X2 [Prunus avium]
Length = 660
Score = 120 bits (300), Expect = 4e-27
Identities = 59/77 (76%), Positives = 67/77 (87%), Gaps = 3/77 (3%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGASEYGYGE NHE+GGRSNA SRE ERG+ERD++G SERRH D+
Sbjct: 521 EEHGRRTRESSYGGDDGASEYGYGEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDE 580
Query: 172 KEQDWDRSDRERHREDK 222
+EQDWDRS+R HRE +
Sbjct: 581 REQDWDRSERGEHREHR 597
>ref|XP_020426099.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
ref|XP_020426104.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
ref|XP_020426109.1| cleavage and polyadenylation specificity factor subunit 6 [Prunus
persica]
gb|ONI30252.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30253.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30254.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30255.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30256.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
gb|ONI30257.1| hypothetical protein PRUPE_1G240200 [Prunus persica]
Length = 660
Score = 119 bits (297), Expect = 1e-26
Identities = 58/77 (75%), Positives = 67/77 (87%), Gaps = 3/77 (3%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDD 171
+EHGR RESSYGGDDGASEYGYGE NHE+GGRSNA SRE ERG+ERD++G SERRH D+
Sbjct: 521 DEHGRRTRESSYGGDDGASEYGYGEANHEKGGRSNAPSRERERGSERDWSGNSERRHRDE 580
Query: 172 KEQDWDRSDRERHREDK 222
+EQDWDRS+R HRE +
Sbjct: 581 REQDWDRSERGEHREHR 597
>ref|XP_023904095.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X2 [Quercus suber]
Length = 655
Score = 117 bits (292), Expect = 5e-26
Identities = 60/84 (71%), Positives = 71/84 (84%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGASEYGYGE NHE+G RS+ ASRE ERG+ERD++G SERRH D+
Sbjct: 517 EEHGRRTRESSYGGDDGASEYGYGEGNHEKGARSSAASREKERGSERDWSGNSERRHRDE 576
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+RE R+RE+KD +
Sbjct: 577 REQDWDRSEREHREPRYREEKDSY 600
>ref|XP_023904094.1| cleavage and polyadenylation specificity factor subunit 6 isoform
X1 [Quercus suber]
Length = 658
Score = 117 bits (292), Expect = 5e-26
Identities = 60/84 (71%), Positives = 71/84 (84%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGASEYGYGE NHE+G RS+ ASRE ERG+ERD++G SERRH D+
Sbjct: 520 EEHGRRTRESSYGGDDGASEYGYGEGNHEKGARSSAASREKERGSERDWSGNSERRHRDE 579
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+RE R+RE+KD +
Sbjct: 580 REQDWDRSEREHREPRYREEKDSY 603
>gb|POE45696.1| cleavage and polyadenylation specificity factor subunit [Quercus
suber]
Length = 670
Score = 117 bits (292), Expect = 5e-26
Identities = 60/84 (71%), Positives = 71/84 (84%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGASEYGYGE NHE+G RS+ ASRE ERG+ERD++G SERRH D+
Sbjct: 532 EEHGRRTRESSYGGDDGASEYGYGEGNHEKGARSSAASREKERGSERDWSGNSERRHRDE 591
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+RE R+RE+KD +
Sbjct: 592 REQDWDRSEREHREPRYREEKDSY 615
>ref|XP_024023946.1| cleavage and polyadenylation specificity factor subunit CG7185
[Morus notabilis]
Length = 644
Score = 115 bits (287), Expect = 2e-25
Identities = 58/83 (69%), Positives = 71/83 (85%), Gaps = 7/83 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSNA-SRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGASEYGYG+ NHE+GGRS+A SRE ERG+ERD++G SERR+H++
Sbjct: 506 EEHGRRTRESSYGGDDGASEYGYGDTNHEKGGRSSAVSRERERGSERDWSGNSERRNHEE 565
Query: 172 KEQDWDRSDRE----RHREDKDG 228
++QDWDRS +E R+RE KDG
Sbjct: 566 RDQDWDRSQKEQKEHRYREGKDG 588
>ref|XP_020253325.1| LOW QUALITY PROTEIN: glycine-rich RNA-binding protein 3,
mitochondrial [Asparagus officinalis]
Length = 370
Score = 112 bits (279), Expect = 4e-25
Identities = 60/118 (50%), Positives = 66/118 (55%)
Frame = +1
Query: 10 GRARESSYGGDDGASEYGYGEVNHERGGRSNASREERGAERDYTGISERRHHDDKEQDWD 189
G ESSYGGDDGASEYGYGE NH+RGG+S A+RE+ ER G SERR DDKEQDWD
Sbjct: 249 GAREESSYGGDDGASEYGYGEANHDRGGKSTAAREK---ERGSDGYSERRKRDDKEQDWD 305
Query: 190 RSDRERHREDKDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVHGSRSRDAD 363
S RERHRED+DG+ ED RSRDAD
Sbjct: 306 GSGRERHREDRDGYRDYRSRDREYDNEADWDRGQSSSRSRSKSYMQEDERRPRSRDAD 363
>gb|PON42322.1| Splicing factor-like protein [Parasponia andersonii]
Length = 659
Score = 114 bits (285), Expect = 4e-25
Identities = 58/84 (69%), Positives = 71/84 (84%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EE GR RESSYGGDDGASEYGYGE NHE+G RS+ ASRE ERG++RD +G SERRHH++
Sbjct: 521 EEQGRRTRESSYGGDDGASEYGYGEANHEKGVRSSAASRERERGSDRDRSGNSERRHHEE 580
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
++QDWDRSD+E R+RE+KDG+
Sbjct: 581 RDQDWDRSDKEQREHRYREEKDGY 604
>gb|PON91400.1| Splicing factor-like protein [Trema orientalis]
Length = 659
Score = 113 bits (282), Expect = 1e-24
Identities = 57/84 (67%), Positives = 72/84 (85%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR----ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRH 162
EE GR +RESSYGGDDGASEYGYGE NHE+G RS+ ASRE ERG++RD +G SERRH
Sbjct: 521 EEQGRRARESRESSYGGDDGASEYGYGEANHEKGVRSSAASRERERGSDRDRSGNSERRH 580
Query: 163 HDDKEQDWDRSDRE-RHREDKDGF 231
H++++QDWDRS++E R+RE+KDG+
Sbjct: 581 HEERDQDWDRSEKEHRYREEKDGY 604
>gb|PIA51496.1| hypothetical protein AQUCO_01100380v1 [Aquilegia coerulea]
gb|PIA51497.1| hypothetical protein AQUCO_01100380v1 [Aquilegia coerulea]
Length = 645
Score = 112 bits (281), Expect = 1e-24
Identities = 51/79 (64%), Positives = 69/79 (87%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 EEHGRARESSYGGDDGASEYGYGEVNHERGGRSNAS--REERGAERDYTGISERRHHDDK 174
+E G RESSYGGDDGASEYGYG+ +HERGGRSNA+ ++RG+ER+++G S+RRH D++
Sbjct: 511 DEQGHTRESSYGGDDGASEYGYGDASHERGGRSNAAPREKDRGSEREWSGNSDRRHRDER 570
Query: 175 EQDWDRSDRE-RHREDKDG 228
EQD+DRSD++ R+RE+KDG
Sbjct: 571 EQDYDRSDKDRRYREEKDG 589
>dbj|GAY43962.1| hypothetical protein CUMW_078620 [Citrus unshiu]
Length = 655
Score = 112 bits (281), Expect = 1e-24
Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGE NHE+G RS ASRE +RG+ERD++G ++RRH ++
Sbjct: 517 EEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRHREE 576
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+R+ RHRE+KD +
Sbjct: 577 REQDWDRSERDHRDHRHREEKDSY 600
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like [Citrus sinensis]
Length = 655
Score = 112 bits (281), Expect = 1e-24
Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGE NHE+G RS ASRE +RG+ERD++G ++RRH ++
Sbjct: 517 EEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRHREE 576
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+R+ RHRE+KD +
Sbjct: 577 REQDWDRSERDHRDHRHREEKDSY 600
>dbj|GAY43963.1| hypothetical protein CUMW_078630 [Citrus unshiu]
Length = 658
Score = 112 bits (281), Expect = 1e-24
Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGE NHE+G RS ASRE +RG+ERD++G ++RRH ++
Sbjct: 520 EEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRHREE 579
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+R+ RHRE+KD +
Sbjct: 580 REQDWDRSERDHRDHRHREEKDSY 603
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like [Citrus sinensis]
Length = 658
Score = 112 bits (281), Expect = 1e-24
Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGE NHE+G RS ASRE +RG+ERD++G ++RRH ++
Sbjct: 520 EEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRHREE 579
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+R+ RHRE+KD +
Sbjct: 580 REQDWDRSERDHRDHRHREEKDSY 603
>ref|XP_024041537.1| cleavage and polyadenylation specificity factor subunit CG7185
[Citrus clementina]
gb|ESR51419.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 112 bits (281), Expect = 1e-24
Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 7/84 (8%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGGDDGAS+YGYGE NHE+G RS ASRE +RG+ERD++G ++RRH ++
Sbjct: 520 EEHGRRTRESSYGGDDGASDYGYGEANHEKGARSTAASREKDRGSERDWSGNTDRRHREE 579
Query: 172 KEQDWDRSDRE----RHREDKDGF 231
+EQDWDRS+R+ RHRE+KD +
Sbjct: 580 REQDWDRSERDHRDHRHREEKDSY 603
>ref|XP_021901218.1| cleavage and polyadenylation specificity factor subunit CG7185
[Carica papaya]
Length = 636
Score = 112 bits (280), Expect = 2e-24
Identities = 55/81 (67%), Positives = 70/81 (86%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 EEHGR-ARESSYGGDDGASEYGYGEVNHERGGRSN-ASRE-ERGAERDYTGISERRHHDD 171
EEHGR RESSYGG+DGAS+YGYGE NHE+GGRS+ ASRE ER +ERD++G ++RRHHD+
Sbjct: 501 EEHGRRTRESSYGGEDGASDYGYGEANHEKGGRSSAASREKERASERDWSGSNDRRHHDE 560
Query: 172 KEQDWDRSDRE-RHREDKDGF 231
+ QDWDRS+RE R+R +KD +
Sbjct: 561 RGQDWDRSEREHRYRGEKDSY 581